Sequence of DPV Vallota mosaic virus

Vallota mosaic virus polyprotein gene, partial cds.

ACC No: EF507688

Dated: 2008-08-06 | Length: 1539 | CRC: -1096014513

                
ID   EF507688; SV 1; linear; genomic RNA; STD; VRL; 1539 BP.
XX
AC   EF507688;
XX
DT   24-APR-2007 (Rel. 91, Created)
DT   06-AUG-2008 (Rel. 96, Last updated, Version 2)
XX
DE   Vallota mosaic virus polyprotein gene, partial cds.
XX
KW   .
XX
OS   Vallota mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus; unclassified Potyvirus.
XX
RN   [1]
RP   1-1539
RA   Monger W.A., Mumford R.A.;
RT   "Vallota mosaic virus infecting nerine in the UK";
RL   Plant Pathol. 57(4):768-768(2008).
XX
RN   [2]
RP   1-1539
RA   Monger W.A.;
RT   ;
RL   Submitted (19-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL   Plant Health, Central Science Laboratory, Sand Hutton, York YO41 1LZ, UK
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1539
FT                   /organism="Vallota mosaic virus"
FT                   /specific_host="Nerine 'Stephanie'"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom"
FT                   /isolation_source="leaf"
FT                   /virion
FT                   /db_xref="taxon:430059"
FT   CDS             <1. .1337
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A4ZZ53"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:A4ZZ53"
FT                   /protein_id="ABP65303.1"
FT                   /translation="QYALAKQDIDFQEQEDIIRYFANGDDLLIAVNGDKGIALLNTLQE
FT                   SFSEMGLNYDFNDRTHNKSELTFMSHQALECDGMYIPKIKQERIVSILEWDRSVEPEHR
FT                   MEAICAAMVEAWGYPELLHEIRKFYAYMLDQEPFSELNAQGRAHYISEQALKTLYMDGK
FT                   VTLLDIEPYLQEIAHLSLVDLDEMVYHQADKTIDAGTSTSQSDRAPQVDRDINAGTFVI
FT                   PRIKALSGKMALPKVRGKSVINLQHLLTYSPEQTDISNTRATHKQFATWYDRVMESYGV
FT                   TDAQMEIILNGLMVWCIENGTSPNLSGMWTMMDKDEQVEYPLKPILENAQPTFRQIMAH
FT                   FSNAAEAYIEKRNSERRYMPRFGSQRNLTDYSLARYAFDFYEITSHTPVRAREAHIQMK
FT                   AAALRNTKTRMFGLDGKVGTEEEDTERHVTTDVNRNMHSLLGVNM"
FT   mat_peptide     <1. .575
FT                   /product="NIb"
FT   mat_peptide     576. .1334
FT                   /product="coat protein"
FT   3'UTR           1338. .>1539
XX
SQ   Sequence 1539 BP; 489 A; 278 C; 367 G; 405 T; 0 other;

ef507688 Length: 1539  06-AUG-2008  Type: N  Check: 7015  ..

       1  tgcaatatgc actagccaag caggacattg atttccagga acaagaggat
      51  ataatacgat attttgccaa tggagatgac ttattgattg cagtgaatgg
     101  agataagggg atcgctttat taaacacgct gcaagaatca ttcagtgaga
     151  tggggttgaa ctatgacttt aacgatcgta ctcacaataa aagcgaactt
     201  acttttatgt ctcaccaagc gctcgaatgt gatggtatgt atataccaaa
     251  aattaagcag gagagaatag tctcaatttt ggaatgggat aggagtgtgg
     301  agccagagca cagaatggaa gccatttgtg ccgcaatggt tgaggcatgg
     351  ggatatccag aactgttaca tgagatccgt aagttctatg catacatgtt
     401  ggatcaggag cctttctcag aattgaatgc acagggtaga gcgcattaca
     451  tatcagaaca agctttgaag acgctgtaca tggacggcaa agtaacttta
     501  ctggacattg aaccatatct tcaagagata gcacatctaa gcttggtaga
     551  tttggatgag atggtctacc atcaggcgga caaaacgata gatgctggca
     601  cctctacttc tcaatcagat cgagcgccac aggtggatcg agacataaac
     651  gcaggcactt tcgtcattcc tcgtattaaa gcactaagtg ggaagatggc
     701  gctcccaaag gtgcgaggga aaagtgtgat taatctacaa catctcctca
     751  cttattcccc agaacagact gatatttcga acacgcgtgc aacccacaaa
     801  caatttgcaa cgtggtatga tcgtgtcatg gagagttatg gagtgactga
     851  tgcacaaatg gaaattattt taaatgggct tatggtttgg tgtattgaaa
     901  atggaacttc accgaacttg agcggaatgt ggacgatgat ggataaggat
     951  gaacaagttg agtatccatt gaaaccgatc ttagaaaatg cgcaacccac
    1001  atttagacaa attatggcgc attttagtaa cgcagccgaa gcttacatcg
    1051  aaaagagaaa ttcggaaaga aggtatatgc caaggtttgg cagccaacgt
    1101  aatctaacag actacagctt agcacgctat gctttcgatt tttatgaaat
    1151  aacttcgcac acaccagtgc gagcaaggga agcacacatc caaatgaaag
    1201  cggcggctct tcgaaacacc aaaacgagga tgtttggatt agatggaaaa
    1251  gttgggaccg aggaagagga cacggaacgg catgtgacga cagatgtcaa
    1301  tcggaacatg cattcactgt taggtgttaa catgtgattt agtgaagcag
    1351  gtattttact taatatctat atttgcccgt cagcatcctt ttcttttgct
    1401  ttaatgtatt agcgtttcag taaaggtgat ccagttattt cgtatgatta
    1451  actggagtga ctttgttgtg aacacacata tgttttagtc gaacaggaat
    1501  gagttgtgta tgtgattgaa cttgagctac ataacacat