Sequence of DPV Barley yellow dwarf virus-PAV
Barley yellow dwarf virus - PAV isolate 005PAV, complete genome.
ACC No: EF521829
Dated: 2007-04-24 | Length: 5666 | CRC: 329950929
ID EF521829; SV 1; linear; genomic RNA; STD; VRL; 5666 BP.
XX
AC EF521829;
XX
DT 24-APR-2007 (Rel. 91, Created)
DT 24-APR-2007 (Rel. 91, Last updated, Version 1)
XX
DE Barley yellow dwarf virus - PAV isolate 005PAV, complete genome.
XX
KW .
XX
OS Barley yellow dwarf virus - PAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-5666
RA Beckett R.J., Miller W.A.;
RT "BYDV/CYDV Global Sequencing Project";
RL Unpublished.
XX
RN [2]
RP 1-5666
RA Miller W.A.;
RT ;
RL Submitted (27-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Iowa State University, 470 Bessey Hall, Ames, IA 50011,
RL USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .5666
FT /organism="Barley yellow dwarf virus - PAV"
FT /specific_host="Bromus secalinus"
FT /isolate="005PAV"
FT /serotype="PAV"
FT /mol_type="genomic RNA"
FT /country="USA:Missouri"
FT /collected_by="Laura Sweets"
FT /virion
FT /db_xref="taxon:12040"
FT primer_bind 1. .19
FT /note="derived from viral specific primer used for RT-PCR"
FT CDS join(142. .1158,1158. .2744)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp; P1-P2 fusion created by -1 ribosomal
FT frameshift"
FT /protein_id="ABP68684.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF
FT FTKSRGGVYAPLSCEPTRQELEAKSEKLERLLEEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE
FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL
FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL
FT VAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGYCRTYPAQLLANSYSA
FT GKRAMYHKAIASLRTVPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR
FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS
FT EQALKWEHGIYNGIFGDSELALALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMG
FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK
FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL
FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTYNETPITNHSRM
FT SYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSILLSIPENHSQNEY"
FT CDS 142. .1161
FT /codon_start=1
FT /product="P1"
FT /note="ORF1"
FT /protein_id="ABP68683.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF
FT FTKSRGGVYAPLSCEPTRQELEAKSEKLERLLEEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE
FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF"
FT CDS 2858. .4810
FT /codon_start=1
FT /transl_except=(pos:3458. .3460,aa:OTHER)
FT /product="aphid transmission protein"
FT /note="P3-P5 fusion created by ribosomal read-through of
FT the ORF3 stop codon"
FT /protein_id="ABP68687.1"
FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT KGRGGANPVFRPTGGSEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTASKVFRAEAINGKEF
FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAKXVDSSTSEPKPAPEPTPIPQPT
FT PAPQPAPEPTPAPVPKRFFEYIGTPTGTISTRENSDSISVSKLGGQSMQYIENEKCETK
FT VIDSFWSTNNNVSAQAAFVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS
FT SGDNWGVGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGT
FT DACFYLMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAERITRHAETPIR
FT SKHILVSEQYEQPLPTVIDQGLCDVQTPEQEQTLVDEEDKQTVSTEPDIALMEYEAATA
FT EIPDAEEDVLPSKEQLSSKPVDTSGNKIPKPKEPEVLGTYQGQNIYPEDVPPIARQKLR
FT EAAKAPSTLLYEKTPKKSNNFLTRFVEANRSPTTPAAPTVSTASNMTREQLAEYTRIRK
FT SLGLTAAKEYKAQFQ"
FT CDS 2858. .3460
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3; P3"
FT /protein_id="ABP68685.1"
FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT KGRGGANPVFRPTGGSEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTASKVFRAEAINGKEF
FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK"
FT CDS 2901. .3362
FT /codon_start=1
FT /product="movement protein"
FT /note="P4; ORF4 translated via a leaky scanning mechanism"
FT /protein_id="ABP68686.1"
FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA
FT GLRYSYSQSTTLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL
FT RPALSLLNSTPRASNQPWVATLIPSQSAGPPQRSSEPKRLTGRNSRNQR"
FT CDS 4917. .5042
FT /codon_start=1
FT /product="P6"
FT /note="ORF6; highly variable sequence"
FT /protein_id="ABP68688.1"
FT /translation="MDDLHVIAVCIFALTVLTGLGAVIGCCAGCLLPPPSFRSSV"
FT primer_bind complement(5651. .5666)
FT /note="derived from viral specific primer used for RT-PCR"
XX
SQ Sequence 5666 BP; 1671 A; 1363 C; 1388 G; 1244 T; 0 other;
ef521829 Length: 5666 24-APR-2007 Type: N Check: 5523 ..
1 agtgaagatt gaccatctca caaaagctgt tacgtgcttg taacacacta
51 cacactcgtt ttgtgttcga ggagtagttg caacaacggt ccccttattg
101 cctgacaagc tgagggccac ccttctgtcc ccaccgccat catgtttttc
151 gaaatactta taggagctag cgctaaggcg gtcaaagact tcatcagcca
201 ttgttactct cgtttgaaat ctatatatta ttctttcaaa cgatggctga
251 tggagatatc tgggcagttt aaggcccatg acgcctttgt caacatgtgt
301 ttcgggcaca tggctgacat tgaggacttc gaggcagagc tcgctgagga
351 gtttgccgag agggaggatg aggtggaaga ggcaaggagc ctcttgaaac
401 tgctggtcgc ccaaaaatct aaaactgggg tgaccgaggc ttggaccgac
451 ttctttacga agtcgagagg tggcgtctat gcgccacttt cctgcgagcc
501 taccaggcag gaactagaag ctaagagcga gaagctcgaa agacttctag
551 aggaacagca ccaattcgag gtgcgagcgg ccaagaaata catcaaggaa
601 aagggccgcg gcttcatcaa ctgctggaac gacttgcgaa gtcgtctcag
651 gctggtgaag gacgtcaagg atgaggcgaa ggacaacgcc agagctgctg
701 ccaagattgg agcagaaatg ttcgccccag ttgacgtaca ggacctctac
751 agctttacag aggtcaagaa ggtggagacc ggcctcatga aggaggtcgt
801 gaaagaaaga aacggtgaag aagagaaaca cctcgagccc atcatggaag
851 aggtgagatc tatcaaggat accgccgaag ccagggacgc cgcctccacc
901 tggataacag agacagttaa gctgaagaac tcaacgctta acgccgatga
951 attgtctctg gccaccatcg cccgctacgt tgaaaacgta ggggacaaat
1001 tcaaactcga cattgccagc aagacatatc taaagcaagt cgcatcgatg
1051 tctgtgccaa ttccaactaa caaggacatc aaattgaaga tggtgctgca
1101 gagtcctgaa gcacgtgcca ggcgggaacg catggacgtg cttgactctg
1151 tgggttttta gaggggctct gtaccgcctc tggttttgag agcccattcc
1201 caattctcgg gctgccagag attgcggtca cagacggggc ccggctccgt
1251 aaggttagta gtaatattag ataccttagc caaacccacc taggtcttgt
1301 atataaggca ccaaatgcct ccctgcacaa cgcgcttgta gcagtggaga
1351 gaagagtttt tacagtagga aagggggaca aagcaatcta ccccccccgc
1401 ccagagcatg atattttcac tgatacgatg gattacttcc aaaaatccat
1451 catagaagag gtgggatact gtagaacata tccagcgcaa ctcctggcta
1501 acagctatag cgcaggaaag agggccatgt atcacaaagc cattgcatca
1551 ctgaggactg tcccttatca tcagaaggat gccaatgtgc aagctttcct
1601 gaaaaaggaa aaacattgga tgaccaagga catcgccccc cgattgattt
1651 gcccccgcag caagcggtac aacatcatcc taggaactcg tttgaaattc
1701 aacgagaaga agatcatgca cgctatagat agtgtgtttg gatcccccac
1751 tgtgctttct ggctatgaca actttaaaca aggaagaatc atagccaaga
1801 agtggcaaaa gtttgcatgc cccgtcgcta tcggcgtgga tgctagccgc
1851 tttgaccaac acgtgtcaga gcaggcgctt aagtgggaac acgggatata
1901 caatggaatc ttcggagaca gcgaactggc tcttgcactt gaacaccaaa
1951 ttaccaacaa catcaagatg tttgttgaag ataaaatgct taggttcaag
2001 gtaagaggcc acagaatgtc cggtgacatt aataccagca tgggaaataa
2051 gctcataatg tgcggcatga tgcatgcata tttcaagaag ctgggtgttg
2101 aagctgaact ttgtaacaac ggagacgact gtgtcatcat cactgataga
2151 gccaatgaga agctctttga tggcatgtac gaccatttcc tccagtatgg
2201 cttcaacatg gtgaccgaaa aaccagttta cgaactggaa caattggagt
2251 tttgccagtc aaaaccggtc tctattaatg gaaagtatag aatggtcaga
2301 aggcccgata gcataggcaa agatagcaca acactactga gcatgctcaa
2351 tcaatccgac gtcaagagct acatgtcggc tgttgctcag tgtggcctgg
2401 tgctcaacgc tggagtaccc atacttgaaa gtttctataa atgcctatat
2451 agaagctcgg ggtacaagaa agtgagtgag gaattcatca aaaacgttat
2501 atcgtatgga acagatgaga gactacaagg tagacgtacc tataatgaaa
2551 cacctatcac aaaccacagt agaatgtcct actgggaatc attcggagtt
2601 gaccctaaga tacagcaaat cgtcgagagg tactacgacg gtcttacggt
2651 aagtgcccaa ctccagagcg tgaaggtgac gactccacat ctgcaatcaa
2701 tactactttc cataccggaa aaccactcac aaaacgaata ttaattacca
2751 gatcttagct gggtttggga tagggttcat agttagtata ccctgtacat
2801 tagctctcgc gtactttatt tataataaag tttcagacac cactagagag
2851 gtggtgaatg aattcagtag gccgtagagg acctagacgc gcaaatcaaa
2901 atggcacaag aaggaggcgc cgtagaacag ttcggccagt ggttgtggtc
2951 caacccaatc gagcaggacc cagacgacga aatggtcgac gcaagggaag
3001 aggaggggca aatcctgtat ttagaccaac aggcgggtct gaggtattcg
3051 tattctcagt cgacaacctt aaagccaact cttccggggc aatcaaattc
3101 ggccccagtc tatcgcaatg cccagcgctt tcagacggaa tacttaagtc
3151 ctaccaccgt tacaagatca caagtatccg tgttgagttt aagtcacacg
3201 cgtccgcaac tacggccggc gctatcttta ttgaactcga caccgcgtgc
3251 aagcaatcag ccctgggtag ctacattaat tccttcacaa tcagcaggac
3301 cgcctcaaag gtcttcagag ccgaagcgat taacgggaag gaattccagg
3351 aatcaacgat agaccagttt tggatgctct acaaggccaa tggaaccacc
3401 actgacacgg caggacaatt catcatcacg atgagtgtca gtttgatgac
3451 ggccaaatag gtagactcct caacatcgga accgaaacct gcaccagaac
3501 ctacaccaat cccacagcct acaccagctc cacagcccgc acccgaaccg
3551 actcctgcac ctgtccccaa aagattcttt gagtatatcg gcactccaac
3601 cggtacaatc tcaacaagag agaactctga cagtatttct gtcagcaaac
3651 ttggtgggca gtcaatgcag tacatagaga acgagaagtg tgaaacaaag
3701 gtcattgact ccttctggag cactaacaac aacgtgtctg cacaggcagc
3751 cttcgtttat ccagtgccag aaggatcata cagtgtgaac atttcgtgcg
3801 aaggctttca atccgttgac cacataggag gcaacgagga tggttattgg
3851 attggtttaa ttgcctactc caattcgtca ggagacaatt ggggggtagg
3901 caactacaaa gggtgcagtt tcaagaactt cttggcaacc aatacttgga
3951 gaccaggcca taaggatctc aagttgaacg attgccagtt cacagatgga
4001 caaatagttg agagggatgc cgtgatgtct ttccatgtgg aagcaacagg
4051 tactgatgcc tgtttctatc tcatggctcc caaaacaatg aaaactgaca
4101 aatacaacta tgttgtctca tatggagggt acacaaacaa acggatggaa
4151 tttggtacca tatctgtgac atgtgatgaa tccgatgttg aggcagaacg
4201 cataacaagg cacgctgaaa cacctatacg ttccaaacac attcttgtgt
4251 ctgaacagta cgagcaacct ttacccaccg taatcgatca gggcttgtgt
4301 gatgtgcaaa ctcccgagca agaacaaaca ctggtggatg aagaagacaa
4351 acagactgtt tccacagaac ctgatatagc actcatggaa tatgaagctg
4401 caacagccga aattccggat gctgaagagg atgttttgcc ctccaaggaa
4451 cagctgtctt ctaaaccggt ggacacgtcc ggcaacaaaa tacctaagcc
4501 caaggaacct gaagtacttg gaacatacca gggacagaat atttaccctg
4551 aagacgtgcc accaattgcg cggcaaaaac tacgtgaagc cgcaaaagca
4601 ccctccacat tactctacga gaaaactccc aagaagagca acaatttctt
4651 gactcgtttt gtggaggcga ataggtcccc tacaactcca gctgccccaa
4701 cagtgtcaac tgcatccaac atgacaaggg aacagcttgc ggagtatact
4751 agaattagga aatcccttgg actcacagca gcgaaggaat acaaggcgca
4801 atttcagtga aggcaacacc actagcacaa atcggatcct gggaaacagg
4851 cagaactacg gttcataagc tcgggtaggc cgtcaaccta ccgccgtatc
4901 gtattgtgtt tggccgatgg atgacctcca cgttatcgcc gtttgtattt
4951 ttgctctaac tgtgttgaca gggttaggcg cggtgatcgg ctgttgtgcc
5001 ggttgccttc tcccccctcc ctccttccgc tcttctgttt aagcaaaaat
5051 ctctcggtct gtgcgagaga aactcaaaaa tatcggggga gctccggctc
5101 agtgagggga ttaacgaccc ccagtaaagg ctggtcttgg cggacttgaa
5151 taacccgcta taggacgaag tggtaaccgc cactgatcaa atggtgaaca
5201 tgcttctgtg ttgtacactg ccccggagcc caccgggtta acaaggctat
5251 tccaccagct cgatgaaatg agagtggagt ggacggagtg ggtgacttcg
5301 atatgtacac ccgatcgtca ggattgaaga cgttaaaact caacgaccta
5351 gtgcaagtcg ttaaactgac tagggtggat acaccacacc cggcctaact
5401 tgtaggcata cccacgatac gaaacgtggg tctcttggag ccactacctg
5451 tgatgcaagg tagggtatga gtcttagcaa gctctgtgcc aggagatgga
5501 cataaaccat agcaatcctg caagtcatct tggcgaacca taggtgaacc
5551 gtgccacggg cctgcctacc gaaaggaaaa gcagtatcca acacagcaat
5601 gtgttggggg ttacaccctt cggggtactc ttaacgctga tactcgaaag
5651 agcagttcgg caaccc