Sequence of DPV Barley yellow dwarf virus-PAV
Barley yellow dwarf virus - PAV isolate 020, complete genome.
ACC No: EF521836
Dated: 2007-04-24 | Length: 5664 | CRC: 1585561774
ID EF521836; SV 1; linear; genomic RNA; STD; VRL; 5664 BP.
XX
AC EF521836;
XX
DT 24-APR-2007 (Rel. 91, Created)
DT 24-APR-2007 (Rel. 91, Last updated, Version 1)
XX
DE Barley yellow dwarf virus - PAV isolate 020, complete genome.
XX
KW .
XX
OS Barley yellow dwarf virus - PAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-5664
RA Beckett R.J., Miller W.A.;
RT "BYDV/CYDV Global Sequencing Project";
RL Unpublished.
XX
RN [2]
RP 1-5664
RA Beckett R.J., Miller W.A.;
RT ;
RL Submitted (27-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Iowa State University, 470 Bessey Hall, Ames, IA 50011,
RL USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .5664
FT /organism="Barley yellow dwarf virus - PAV"
FT /isolate="020"
FT /serotype="PAV"
FT /mol_type="genomic RNA"
FT /country="USA:Oklahoma"
FT /collected_by="Robert Hunger"
FT /virion
FT /note="collected_by=Robert Hunger"
FT /db_xref="taxon:12040"
FT primer_bind 1. .19
FT /note="derived from viral specific primer used for RT-PCR"
FT CDS join(142. .1158,1158. .2744)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp; P1-P2 fusion created by -1 ribosomal
FT frameshift"
FT /protein_id="ABP68725.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF
FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE
FT KNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL
FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL
FT VAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGYCKTYPAQLLANSYSA
FT GKRAMYHKATASLRTVPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR
FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS
FT EQALKWEHGIYNGIFGDSELALALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMG
FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMHDHFLQYGFNMVTEK
FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL
FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTYNETPITNHSRM
FT SYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSILLSIPENHSQNEY"
FT CDS 142. .1161
FT /codon_start=1
FT /product="P1"
FT /note="ORF1"
FT /protein_id="ABP68726.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF
FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE
FT KNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF"
FT CDS 2858. .4810
FT /codon_start=1
FT /transl_except=(pos:3458. .3460,aa:OTHER)
FT /product="aphid transmission protein"
FT /note="P3-P5 fusion created by ribosomal read-through of
FT the ORF3 stop codon"
FT /protein_id="ABP68727.1"
FT /translation="MNSVGRRGPRRANQNGPRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTASKVFRAEAINGKDF
FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAKXVDSSTPEQKPAPEPTPTPQPT
FT PAPQPAPEPTPAPVPKRFFEYIGTPTGTISTRENSDSISVSKLGGQSMQYIENEKCETK
FT VIDSFWSTNNNVSAQAAFVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS
FT SGDNWGVGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGT
FT DACFYLMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAERITRHAETPIR
FT SKHILVSEQYEQPLPTIIDQGLCDVQTPEQEQTLVDEEDKQTVSTEPDIALMEYEAATA
FT EIPDAEEDVLPSKEQLSSKPVDTSGNKMPKPKEPEVLGTYQGQNIYPEDVPPVARQKLR
FT EAANAPSTLLYERTPKKSNNFLTRFVEANRSPTTPAAPTVSTASNMTREQLAEYTRIRK
FT SLGLTAAKEYKAQFQ"
FT CDS 2858. .3460
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3; P3"
FT /protein_id="ABP68728.1"
FT /translation="MNSVGRRGPRRANQNGPRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTASKVFRAEAINGKDF
FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK"
FT CDS 2901. .3362
FT /codon_start=1
FT /product="movement protein"
FT /note="P4; ORF4 translated via a leaky scanning mechanism"
FT /protein_id="ABP68729.1"
FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA
FT GLRYSYSQSTTLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL
FT RPALSLLNSTPRANNQPWVATLIPSQSAGPPQRSSEPKRLTGRISRNQR"
FT CDS 4917. .5042
FT /codon_start=1
FT /product="P6"
FT /note="ORF6; highly variable sequence"
FT /protein_id="ABP68730.1"
FT /translation="MDDLHVIAVCILALTVLTGLGAVIGCCAGCLHPPPSFRSSV"
FT primer_bind complement(5649. .5664)
FT /note="derived from viral specific primer used for RT-PCR"
XX
SQ Sequence 5664 BP; 1665 A; 1373 C; 1393 G; 1233 T; 0 other;
ef521836 Length: 5664 24-APR-2007 Type: N Check: 1352 ..
1 agtgaagatt gaccatctca caaaagctgt tacgtgcttg taacacacta
51 cacactcgtt ttgtgttcga gaagtagttg caacaacggt ccccttattg
101 cctgacaagc tgagggccac ccttctatcc ccaccgccat catgttcttc
151 gaaatactta taggagctag cgctaaggcg gtaaaagact tcatcagcca
201 ttgttactct cgtttaaaat ctatatatta ttcttttaaa cgatggctga
251 tggagatatc cgggcagttc aaggcccatg acgcctttgt caacatgtgc
301 ttcgggcaca tggctgacat tgaggacttc gaggcagagc tcgctgaaga
351 gtttgccgag agggaggatg aggtggaaga ggctaggagt ctcttgaaac
401 tgctggtcgc ccaaaaatcc aaaactgggg tgaccgaggc ttggaccgat
451 ttcttcacga agtcgagagg tggcgtctat gcgccacttt cctgcgagcc
501 taccaggcag gagctagaag tcaagagcga gaagctcgaa aaacttctag
551 aagaacagca ccaattcgag gtgcgagcgg ccaaaaaata catcaaggaa
601 aagggccgcg gcttcatcaa ctgctggaac gacttgcgaa gtcgtctcag
651 gctggtgaag gacgtcaagg acgaggcgaa ggacaacgcc agagctgctg
701 ccaagatcgg agcagaaatg ttcgcccccg ttgacgtgca ggacctctac
751 agtttcacag aggtcaagaa ggtggagacc ggcctcatga aggaggtcgt
801 gaaagagaaa aacggcgaag aagagaaaca cctcgagccc atcatggaag
851 aggtgagatc catcaaggac accgccgaag ccagggacgc cgcctccacg
901 tggataacag agacagttaa gctgaagaat tcaacgctta acgcagatga
951 attgtctctg gccaccatcg cccgctacgt tgaaaacgta ggggacaaat
1001 tcaaactcga cattgctagc aaaacatatc taaagcaagt cgcatcgatg
1051 tctgtaccaa ttccaaccaa caaggacatc aagttgaaga tggtgctgca
1101 gagtcctgaa gcacgtgcca ggcgggaacg catggacgtg cttgactctg
1151 tgggttttta gaggggctct gtaccgcctc tggttttgag agcccattcc
1201 ccattctcgg gctgccagag attgcggtca cagacggagc ccggctccgc
1251 aaggttagta gtaatattag ataccttagc caaacccacc taggtcttgt
1301 atataaggca ccaaatgcct ccctgcacaa tgcgcttgta gcagtggaga
1351 gaagagtttt tacagtagga aagggggaca aagcaattta ccccccccgc
1401 ccggagcatg acattttcac tgatacgatg gattacttcc aaaaatccat
1451 tatagaagag gtgggatact gtaaaacata tccagcgcaa ctcctggcta
1501 acagctatag cgcaggaaag agggccatgt atcacaaagc cactgcatca
1551 ttgaggactg tcccttatca tcaaaaggat gccaatgtgc aagctttcct
1601 gaagaaggaa aaacattgga tgaccaagga catcgccccc cgattgattt
1651 gcccccgcag caagcggtac aatatcatcc taggaactcg tttgaaattc
1701 aacgagaaga agatcatgca cgctatcgat agtgtgttcg gatcccccac
1751 tgtgctttct ggctatgaca actttaaaca aggaagaatc atagccaaga
1801 agtggcaaaa gtttgcatgc cccgtcgcca tcggcgtgga tgctagccgc
1851 tttgaccaac acgtgtcaga gcaggcgctt aagtgggaac acgggatata
1901 caatgggatc tttggggaca gcgaactggc tcttgcactt gaacaccaaa
1951 tcaccaacaa catcaagatg tttgttgaag ataaaatgct taggttcaag
2001 gtaagaggcc acagaatgtc cggtgacatt aataccagca tgggaaacaa
2051 gctcataatg tgcggcatga tgcacgcata ttttaagaag ctgggtgttg
2101 aagctgaact ttgcaacaac ggagacgact gtgtcatcat cactgataga
2151 gccaatgaga agctctttga tggcatgcac gaccacttcc tccagtatgg
2201 cttcaacatg gtgaccgaaa aaccagttta cgaactggag caattggagt
2251 tttgccagtc aaaaccggtc tctattaatg gaaagtatag aatggtcaga
2301 aggcccgata gcataggcaa agatagcaca acactactga gcatgctcaa
2351 tcaatccgac gtcaagagct acatgtcggc tgttgctcag tgtggtctgg
2401 tgctcaacgc tggagtaccc atacttgaaa gtttctataa atgcctatat
2451 agaagctcgg ggtacaagaa agtgagtgag gaatttatta aaaacgtcat
2501 atcgtatgga acagatgaga gactacaagg tagacgtacc tataatgaaa
2551 cacctatcac aaaccacagt agaatgtcct actgggaatc attcggagtt
2601 gaccctaaga tacagcaaat cgtcgagagg tactacgacg gtcttacggt
2651 aagtgcccaa ctccagagcg tgaaggtgac gactccacat ctgcaatcaa
2701 tactgctttc cataccggaa aaccactcac aaaacgaata ttaattacca
2751 aatcttagct gggtttggga tagggttcat agttagtata ccctgtacat
2801 tagctctcgc gtactttatt tacaataaag tttcagacac cactagagag
2851 gtggtgaatg aattcagtag gccgtagagg acctagacgc gcaaatcaaa
2901 atggcccaag aaggaggcgc cgtagaacag ttcggccagt ggttgtggtc
2951 caacccaatc gagcaggacc cagacgacga aatggtcgac gcaagggaag
3001 aggaggggca aatcctgtat ttagaccaac aggcgggact gaggtattcg
3051 tattctcagt cgacaacctt aaagccaact cttccggggc aatcaaattc
3101 ggccccagtc tatcgcaatg cccagcgctt tcagacggaa tacttaagtc
3151 ctaccaccgt tacaagatca caagtatccg tgttgagttt aagtcacacg
3201 cgtccgcaac tacggccggc gctatcttta ttgaactcga caccgcgtgc
3251 aaacaatcag ccctgggtag ctacattaat tccttcacaa tcagcaggac
3301 cgcctcaaag gtcttcagag ccgaagcgat taacgggaag gatttccagg
3351 aatcaacgat agaccagttc tggatgctct acaaggccaa tggaaccacc
3401 actgacacgg caggacaatt cattatcacg atgagtgtca gtttgatgac
3451 ggccaaatag gtagactcct caacaccgga acagaaacct gcaccagaac
3501 ctacaccaac tccacagcca acgccagctc cgcagcctgc acccgaaccg
3551 actcctgcac ctgtccccaa aagattcttt gagtatatcg gtactccaac
3601 cggtacaatc tcaacaagag agaactctga cagcatttct gtcagcaagc
3651 tcggtgggca gtcaatgcag tacatagaga atgagaagtg tgaaacaaag
3701 gtaattgact ccttctggag cactaacaac aacgtgtctg cacaggcagc
3751 ctttgtttat ccagtgccag aagggtcata cagtgtgaac atttcgtgcg
3801 aaggctttca atccgttgac cacataggag gcaacgagga tggctattgg
3851 attggtttaa ttgcctactc caactcgtca ggagacaatt ggggggtagg
3901 caactacaaa gggtgcagtt tcaagaactt cttggcaact aatacttgga
3951 gaccaggcca taaggatctc aagttgaacg attgccagtt cacagatgga
4001 caaatagttg aaagggatgc cgtgatgtct ttccatgtgg aagcaacagg
4051 tactgacgcc tgtttctatc tcatggctcc caaaacaatg aaaactgaca
4101 aatacaacta tgttgtctca tatggagggt acacaaacaa acgaatggaa
4151 tttggtacta tatctgtgac atgtgatgaa tccgatgttg aggcagaacg
4201 cataacaagg cacgctgaaa cacccatacg ttccaaacac attcttgtgt
4251 ccgaacagta tgagcaacct ttacccacca taatcgatca aggcttgtgt
4301 gatgtgcaaa ctcccgagca agaacaaaca ctggtggatg aagaagacaa
4351 acagactgtt tccacagaac ctgatatagc acttatggaa tatgaagctg
4401 caacagccga aattccggat gctgaagagg acgttttgcc ctccaaggaa
4451 cagctgtctt ccaaaccggt ggacacgtct ggcaacaaga tgcctaagcc
4501 caaggaacct gaagtacttg gaacatacca gggacagaat atttaccctg
4551 aagacgtacc accagttgcg cggcaaaagc tacgtgaagc cgcaaatgca
4601 ccctccacat tgctctacga gaggactccc aagaagagca ataatttctt
4651 gactcgtttt gtggaggcga ataggtcccc tactactcca gctgccccaa
4701 cagtgtcaac tgcatcaaac atgacaaggg aacagcttgc ggagtacact
4751 agaattagga aatcccttgg actcacagca gcgaaggaat acaaggcgca
4801 atttcagtga aggtgacacc actagcacaa atcggatcct gggaaacagg
4851 cagaactacg gttcgtaagc tcgggtaggc cgtcaaccta ccgccgtatc
4901 gtattgtgtt tggccgatgg atgacctcca cgttatcgcc gtttgtattc
4951 ttgctctaac tgtgttgaca gggttaggcg cggtgatcgg ctgttgtgcc
5001 ggttgcctcc accccccccc ctccttccgc tcttctgttt aagcaaaatc
5051 tctcggtctg tgcgagagaa actcaaaaat atcggggagc ttcggctcag
5101 tgaggggatt aacgaccccc agtagaggct ggtcttggcg gacttgaata
5151 acccgctata agacgaagtg gtaaccgcca ctgatcaaat ggtgaacatg
5201 cttctgtgtt gtacactgcc ccggagccta ccgggttaac aaggctattc
5251 caccagctcg atgaaatgag agtggagtgg acggagtggg tgacttcgtg
5301 atgtacaccc gatcgtcagg attgaagacg ttaaaactcg acgacctagt
5351 gcaagtcgtt aaactgacta gggtggatac accacacccg gcctaacttg
5401 taggcatacc cacgatacga aacgtgggtc tcttggagcc actacctgtg
5451 atgcaaggta gggtatgagt cttagcaagc tctgtgccag gagatggaca
5501 taaaccatag caatcctgca agtcatcctg gcgaaccata ggtgaaccgt
5551 gccacgggcc tgtctaccga aaggaaaagc agtatccaac acagcaatgt
5601 gttgggggtt acacccttcg gggtactctt aacgctgaca ctcgaaagag
5651 cagttcggca accc