Sequence of DPV Barley yellow dwarf virus-PAV
Barley yellow dwarf virus - PAV isolate 047, complete genome.
ACC No: EF521838
Dated: 2007-04-24 | Length: 5666 | CRC: -1928772738
ID EF521838; SV 1; linear; genomic RNA; STD; VRL; 5666 BP.
XX
AC EF521838;
XX
DT 24-APR-2007 (Rel. 91, Created)
DT 24-APR-2007 (Rel. 91, Last updated, Version 1)
XX
DE Barley yellow dwarf virus - PAV isolate 047, complete genome.
XX
KW .
XX
OS Barley yellow dwarf virus - PAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-5666
RA Beckett R.J., Miller W.A.;
RT "BYDV/CYDV Global Sequencing Project";
RL Unpublished.
XX
RN [2]
RP 1-5666
RA Beckett R.J., Miller W.A.;
RT ;
RL Submitted (27-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Iowa State University, 470 Bessey Hall, Ames, IA 50011,
RL USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .5666
FT /organism="Barley yellow dwarf virus - PAV"
FT /isolate="047"
FT /serotype="PAV"
FT /mol_type="genomic RNA"
FT /country="USA:New York"
FT /virion
FT /db_xref="taxon:12040"
FT primer_bind 1. .19
FT /note="derived from viral specific primer used for RT-PCR"
FT CDS join(142. .1158,1158. .2744)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp; P1-P2 fusion created by -1 ribosomal
FT frameshift"
FT /protein_id="ABP68737.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF
FT FTKSRGGVYAPLSCEPTRQELEAKSEKLERLLEEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE
FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL
FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL
FT VAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGHCRTYPAQLLANSYSA
FT GKRAMYHKAIASLRTVPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR
FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS
FT EQALKWEHGIYNGIFGDSELALALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMG
FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK
FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL
FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTYNETPITNHSRM
FT SYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSILLSIPENHSQNEY"
FT CDS 142. .1161
FT /codon_start=1
FT /product="P1"
FT /note="ORF1"
FT /protein_id="ABP68738.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF
FT FTKSRGGVYAPLSCEPTRQELEAKSEKLERLLEEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE
FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF"
FT CDS 2858. .4810
FT /codon_start=1
FT /transl_except=(pos:3458. .3460,aa:OTHER)
FT /product="aphid transmission protein"
FT /note="P3-P5 fusion created by ribosomal read-through of
FT the ORF3 stop codon"
FT /protein_id="ABP68739.1"
FT /translation="MNSVGRRGPRRANQNGPRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTASKVFRAEAINGKEF
FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAKXVDSSTPEPKPAPGPTPTPQPT
FT PAPQPAPEPTPAPVPKRFFEYIGTPTGTISTRENSDSISVSKLGGQLMQYIENEKCETK
FT VIDSFWSTNNNVSAQAAFVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS
FT SGDNWGVGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGT
FT DACFYLMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAERITRHAETPIR
FT SKHILVSEQYEQPLPTIIDQGLCDVQTPEQEQTLVDEEDKQTVSTEPDIALMEYEAATA
FT EIPDAEEDVLPSKEQLSSKPVDTSGNKIPKPKEPEVLGTYQGQNIYPEDVPPIARQKLR
FT DAANAPSTLLYERTPKKSNNFLTRFMEANRSPTTPAAPTVSTVSNMTREQLAEYTRIRK
FT SLGLTAAKEYKAQFQ"
FT CDS 2858. .3460
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3; P3"
FT /protein_id="ABP68740.1"
FT /translation="MNSVGRRGPRRANQNGPRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASATTAGAIFIELDTACKQSALGSYINSFTISRTASKVFRAEAINGKEF
FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK"
FT CDS 2901. .3362
FT /codon_start=1
FT /product="movement protein"
FT /note="P4; ORF4 translated via a leaky scanning mechanism"
FT /protein_id="ABP68741.1"
FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA
FT GLRYSYSQSTTLKPTLPGQSNSVPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL
FT RPALSLLNSTPRANNQPWVATLIPSQSAGPPQRSSEPKRLTGRNSRNQR"
FT CDS 4917. .5042
FT /codon_start=1
FT /product="P6"
FT /note="ORF6; highly variable sequence"
FT /protein_id="ABP68742.1"
FT /translation="MDDLHVIAVCIFALTVLTGLGAVIGCCAGCLLPPPSFRSSV"
FT primer_bind complement(5651. .5666)
FT /note="derived from viral specific primer used for RT-PCR"
XX
SQ Sequence 5666 BP; 1666 A; 1376 C; 1388 G; 1236 T; 0 other;
ef521838 Length: 5666 24-APR-2007 Type: N Check: 9959 ..
1 agtgaagatt gaccatctca caaaagctgt tacgtgcttg taacacacta
51 cacactcgtt ttgtattcga gaagtagttg caacaacggt ccccttattg
101 cctgacaagc tgagggccac ccttctatcc ccaccgccat catgtttttc
151 gaaatactta taggagctag cgctaaggcg gtcaaagact tcatcagtca
201 ttgttactct cgtttaaaat ctatatatta ctcttttaaa cgatggctga
251 tggagatatc tgggcagttt aaggcccatg acgcctttgt caacatgtgc
301 ttcgggcaca tggctgacat tgaagacttc gaggcagagc tcgctgagga
351 gtttgccgag agggaggatg aggtggaaga ggcaaggagc ctcttgaaac
401 tgctggtcgc ccaaaaatct aaaaccgggg tgaccgaggc ttggaccgac
451 ttctttacga agtcgagagg tggcgtctat gcgccacttt cctgcgagcc
501 taccaggcag gagctagaag ccaagagcga gaagctcgaa agacttctag
551 aagaacagca ccaattcgag gtgcgagcgg ccaagaaata tatcaaggaa
601 aagggccgcg gcttcatcaa ctgctggaac gacttgcgaa gtcgtctcag
651 gctggtgaag gacgtcaagg acgaggcgaa ggacaatgcc agagctgctg
701 ccaagatcgg agcagaaatg ttcgcccccg ttgacgtgca ggacctctac
751 agttttacgg aggtcaagaa ggtggagacc ggcctcatga aggaggtcgt
801 gaaagagaga aacggcgaag aagagaaaca cctcgagccc atcatggaag
851 aggtgagatc tatcaaggat accgccgaag ccagggacgc cgcctccacc
901 tggattacag agacagttaa gctgaagaac tcaacgctca acgcagatga
951 attgtctctg gccaccatcg cccgctacgt tgaaaacgta ggggataagt
1001 tcaaactcga cattgctagc aaaacatatt taaagcaagt cgcatcgatg
1051 tctgtaccaa ttccaactaa caaggacatc aaattgaaga tggtgctgca
1101 gagtcctgaa gcacgtgcca ggcgggaacg catggacgtg cttgactctg
1151 tgggttttta gaggggctct gtaccgcctc tggttttgag agcccattcc
1201 ctattctcgg gctgccagag attgcggtca cagacggagc ccggctccgt
1251 aaggttagta gtaatattag ataccttagc caaacccacc taggtcttgt
1301 atataaggca ccaaatgcct ccctgcacaa tgcgcttgta gcagtggaga
1351 gaagagtttt tacagtagga aagggggaca aagcaatcta ccccccccgc
1401 ccagagcatg acattttcac tgatacgatg gattacttcc aaaaatccat
1451 tatagaagag gtgggacact gtagaacata tccagcgcaa ctcctggcta
1501 acagctatag cgcaggaaag agggccatgt atcacaaagc cattgcatca
1551 ttgaggactg tcccttatca tcagaaggat gccaatgtgc aagctttcct
1601 gaagaaggaa aaacattgga tgaccaagga catcgccccc cgattgattt
1651 gcccccgcag caagcggtac aatatcatcc taggaactcg tttgaaattc
1701 aacgagaaga agatcatgca cgctattgat agtgtgttcg gatcccccac
1751 tgtgctttct ggctatgaca actttaaaca aggaagaatc atagccaaga
1801 agtggcaaaa gtttgcatgc cccgtcgcca tcggcgtgga tgctagccgc
1851 tttgaccaac acgtgtcaga gcaggcgctt aagtgggaac acgggatata
1901 caatgggatc ttcggagaca gcgaactggc tcttgcactt gaacaccaaa
1951 ttaccaacaa catcaagatg tttgttgaag ataaaatgct caggtttaag
2001 gtaagaggcc acagaatgtc cggcgacatt aataccagca tgggaaataa
2051 gctcataatg tgcggcatga tgcacgcata tttcaagaag ctgggtgttg
2101 aagctgaact ttgcaacaac ggagacgact gtgtcatcat cactgataga
2151 gccaatgaaa agctctttga tggcatgtac gaccatttcc tccagtatgg
2201 cttcaacatg gtgaccgaaa aaccagttta cgaactggag caattggagt
2251 tttgccagtc aaaaccggtc tctattaatg gaaagtatag aatggtcaga
2301 aggcccgata gcataggcaa agatagcaca acactactga gcatgctcaa
2351 tcaatccgac gtcaagagct acatgtcggc tgttgctcag tgtggcctgg
2401 tgctcaacgc tggagtaccc atacttgaaa gtttctataa atgcctatat
2451 agaagctcgg ggtacaagaa agtgagtgag gaatttatta aaaacgtcat
2501 atcgtatgga acagatgaga gactacaagg cagacgtacc tataatgaaa
2551 cacccatcac aaaccacagt agaatgtcct actgggaatc attcggagtt
2601 gaccctaaga tacagcaaat cgtcgagagg tactacgacg gtcttacggt
2651 aagtgcccaa ctccagagcg tgaaggtgac gactccacat ctgcaatcaa
2701 tactactttc cataccggaa aaccactcac aaaacgaata ttaattacca
2751 aatcttagct gggtttggga tagggttcat agttagtata ccctgtacat
2801 tagctctcgc gtactttatt tacaataaag tttcagacac cactagagag
2851 gtggtgaatg aattcagtag gccgtagagg acctagacgc gcaaatcaaa
2901 atggcccaag aaggaggcgc cgtagaacag ttcggccagt ggttgtggtc
2951 caacccaatc gagcaggacc cagacgacga aatggtcgac gcaagggaag
3001 aggaggggca aatcctgtat ttagaccaac aggcgggact gaggtattcg
3051 tattctcagt cgacaacctt aaagccaact cttccggggc aatcaaattc
3101 ggtcccagtc tatcgcaatg cccagcgctt tcagacggaa tacttaagtc
3151 ctaccaccgt tacaagatca caagtatccg tgttgagttt aagtcacacg
3201 cgtccgcaac tacggccggc gctatcttta ttgaactcga caccgcgtgc
3251 aaacaatcag ccctgggtag ctacattaat tccttcacaa tcagcaggac
3301 cgcctcaaag gtcttcagag ccgaagcgat taacgggaag gaattccagg
3351 aatcaacgat agaccagttt tggatgctct acaaggccaa tggaaccacc
3401 actgacacgg caggacaatt cattatcacg atgagtgtca gtttgatgac
3451 ggccaaatag gtagactcct caacaccgga accgaaacct gcaccaggac
3501 ccacaccaac cccacagcca acgccagctc cacagcccgc acccgaaccg
3551 actcctgcac cagtccccaa aagattcttt gagtatatcg gcactccaac
3601 cggtacaatc tcaacaagag agaactctga cagtatttct gtcagcaagc
3651 tcggtggaca gttgatgcag tacatagaga atgagaagtg tgaaacaaag
3701 gtcattgact ccttctggag cactaacaac aacgtgtctg cacaggcagc
3751 cttcgtttat ccagtgccag aggggtcata cagtgtgaac atttcgtgcg
3801 aaggctttca atccgttgac cacataggag gcaacgagga tggctattgg
3851 attggtttaa tcgcctactc caactcgtca ggagacaatt ggggggtagg
3901 caattacaaa gggtgcagtt tcaagaactt cttggcaacc aatacttgga
3951 gaccaggcca taaggatctc aagttgaacg attgccagtt cacagatgga
4001 caaatagttg aaagggatgc cgtgatgtct ttccatgtgg aagcaacagg
4051 tactgacgcc tgtttctatc tcatggctcc caaaacaatg aaaactgaca
4101 aatacaacta tgttgtctca tatggagggt acacaaacaa acgaatggaa
4151 tttggtacca tatctgtgac atgtgatgaa tccgatgttg aggcagaacg
4201 cataacaagg cacgctgaaa cacccatacg ttccaaacac attcttgtgt
4251 ccgaacagta tgagcaacct ttacccacca taatcgatca aggcttgtgt
4301 gatgtgcaaa ctcccgagca agaacaaaca ctggtggatg aagaagacaa
4351 acagactgtt tccacagaac ctgatatagc actcatggaa tatgaagctg
4401 caacagccga aattccggat gctgaagagg atgttttgcc ctccaaggaa
4451 cagctgtctt ctaaaccggt tgacacgtcc ggcaacaaga tacctaagcc
4501 caaggaacct gaagtacttg gaacatacca gggacagaat atttaccctg
4551 aagacgtgcc accaattgct cggcaaaaac tacgtgacgc cgcgaatgca
4601 ccctccacat tactctacga gaggactccc aagaagagca acaatttctt
4651 gactcgtttt atggaggcaa ataggtcccc tactactcca gctgccccaa
4701 cagtgtcaac tgtatcaaac atgacaaggg aacagcttgc ggagtacact
4751 agaattagga aatcccttgg actcacagca gcgaaggaat acaaggcgca
4801 atttcagtga aggcagcacc actagcacaa atcggatcct gggaaacagg
4851 cagaactacg gttcataagc tcgggtaggc cgtcaaccta ccgccgtatc
4901 gtattgcgct tggccgatgg atgacctcca cgttatcgcc gtttgtattt
4951 ttgctctaac tgtgttgaca gggttaggcg cggtgatcgg ctgttgcgcc
5001 ggttgccttc tcccccctcc ctccttccgc tcttctgttt aagcaaaaaa
5051 tctctcggtc tgtgcgagag aaactcaaaa atatcgggga gcttcggctc
5101 agtgagggga ttaacgaccc ccagtaatgg ctggtcttgg cggacttgaa
5151 taacccgcta taagacgaag tggttaccgc cactgatcaa atggtgaaca
5201 tgcttctgtg ttgtacactg ccccggagcc aaccgggtca acaaggctat
5251 tccaccagct cgatgagatg agagtggagt ggacggagtg ggtgacttcg
5301 agatgtacac ccgatcgtca ggattgaaga cgttaaaact cgacgaccta
5351 gtgcaagtcg ttaaactgac tagggtggat acaccacacc cggcctaact
5401 tgtgggcata cccacgatac gaaacgtggg tctcttggag ccactacctg
5451 tgatgcaagg tagggtatga gtcttagcaa gctctgtgcc aggagatgga
5501 cataaaccat agcaatcctg caagtcatct tggcgaacca taggtgaacc
5551 gtgccacggg cctgcctacc gaaaggaaaa gcagtatcca acacagcaat
5601 gtgttggggg ttacaccctt cggggtactc ttaacgctga cactcgaaag
5651 agcagttcgg caaccc