Sequence of DPV Barley yellow dwarf virus-PAV
Barley yellow dwarf virus - PAV isolate 0102, complete genome.
ACC No: EF521849
Dated: 2007-04-24 | Length: 5671 | CRC: 1926165305
ID EF521849; SV 1; linear; genomic RNA; STD; VRL; 5671 BP.
XX
AC EF521849;
XX
DT 24-APR-2007 (Rel. 91, Created)
DT 24-APR-2007 (Rel. 91, Last updated, Version 1)
XX
DE Barley yellow dwarf virus - PAV isolate 0102, complete genome.
XX
KW .
XX
OS Barley yellow dwarf virus - PAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-5671
RA Beckett R.J., Miller W.A.;
RT "BYDV/CYDV Global Sequencing Project";
RL Unpublished.
XX
RN [2]
RP 1-5671
RA Beckett R.J., Miller W.A.;
RT ;
RL Submitted (27-MAR-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Iowa State University, 470 Bessey Hall, Ames, IA 50011,
RL USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .5671
FT /organism="Barley yellow dwarf virus - PAV"
FT /isolate="0102"
FT /serotype="PAV"
FT /mol_type="genomic RNA"
FT /country="USA:California"
FT /collected_by="C.M. Malmstrom"
FT /virion
FT /db_xref="taxon:12040"
FT primer_bind 1. .29
FT /note="derived from viral specific primer used for RT-PCR"
FT CDS join(142. .1158,1158. .2744)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp; P1-P2 fusion created by -1 ribosomal
FT frameshift"
FT /protein_id="ABP68803.1"
FT /translation="MFFEILLGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEVARSLLKLLVAQKSKTGVTEAWTDF
FT FTKSRGGVYAPLSCEPTRQELEAKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPIDVQDLYSFTEVKKVETGLMKEVVKE
FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE
FT NVGDRFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL
FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL
FT VAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEAGYCRTYPAQLLANSYSA
FT GKRAMYHKAIASLRTVPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR
FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS
FT EQALKWEHGIYNGIFGDSELALALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMG
FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK
FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL
FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTYNETPITNHSRM
FT SYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSILLSIPENHSQNEY"
FT CDS 142. .1161
FT /codon_start=1
FT /product="P1"
FT /note="ORF1"
FT /protein_id="ABP68804.1"
FT /translation="MFFEILLGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEVARSLLKLLVAQKSKTGVTEAWTDF
FT FTKSRGGVYAPLSCEPTRQELEAKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPIDVQDLYSFTEVKKVETGLMKEVVKE
FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE
FT NVGDRFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF"
FT CDS 2858. .4810
FT /codon_start=1
FT /transl_except=(pos:3458. .3460,aa:OTHER)
FT /product="aphid transmission protein"
FT /note="P3-P5 fusion created by ribosomal read-through of
FT the ORF3 stop codon"
FT /protein_id="ABP68805.1"
FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASATTAGAIFIELDTACKQSALASYINSFTISRTASKVFRAEAINGKEF
FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAKXVDSSTPEPKPAPEPTPTPQPT
FT PAPQPAPEPTPAPAPKRFFEYIGTPTGTISTRENSDSISVSKLGGQSMQYIENEKCETK
FT VIDSFWSTNNNVSAQAAFVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS
FT SGDNWGVGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGT
FT DACFYLMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAERTTRHAETPIR
FT SKHILVSEQYEQPLPTIIDQGLCDVQTPEQEQTLVDEEDKQTVSTEPDIALMEYESATA
FT EIPDAEEDVLPSKEQLSSKPVDTSGNKIPKPKEPEVLGTYQGQNIYPEDVPPIARQKLR
FT EAANAPSTLLYEKTPKKSNNFLTRFVEANRSPTTPAAPSVSTVSNMTREQLAEYTRIRR
FT SLGLTAAKEYKAQFQ"
FT CDS 2858. .3460
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3; P3"
FT /protein_id="ABP68806.1"
FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASATTAGAIFIELDTACKQSALASYINSFTISRTASKVFRAEAINGKEF
FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK"
FT CDS 2901. .3362
FT /codon_start=1
FT /product="movement protein"
FT /note="P4; ORF4 translated via a leaky scanning mechanism"
FT /protein_id="ABP68807.1"
FT /translation="MAQEGGAVEQFGQWLWSNQIEQDPDDEMVDAREEEGQILYLDQQA
FT GLRYSYSQSTTLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL
FT RPALSLLNSTPRANNQPWLATLIPSQSAGPPQRSSEPKRLTGRNSRNQR"
FT CDS 4917. .5003
FT /codon_start=1
FT /product="P6"
FT /note="ORF6; highly variable sequence"
FT /protein_id="ABP68808.1"
FT /translation="MDDLHVIAVCIFFFALTVLTGLGAVIGC"
FT primer_bind complement(5648. .5671)
FT /note="derived from viral specific primer used for RT-PCR"
XX
SQ Sequence 5671 BP; 1681 A; 1373 C; 1376 G; 1241 T; 0 other;
ef521849 Length: 5671 24-APR-2007 Type: N Check: 5804 ..
1 agtgaagatt gaccatctca caaaagctgt tacgtgcttg taacacacta
51 cacactcgtt ttgttttcga gaagtagttg caacaacggt ccccttattg
101 cctgacaagc tgagggccac ccttctatcc ccaccgccat catgttcttc
151 gaaatacttc taggagctag cgctaaggcg gtaaaagact tcattagtca
201 ttgttactca cgtttaaaat ctatatatta ttcttttaaa cgatggctaa
251 tggagatatc tgggcagttt aaggcccacg acgcctttgt caacatgtgc
301 ttcgggcaca tggctgacat tgaggacttc gaggcagagc tcgctgagga
351 gtttgccgag agggaggatg aggtggaagt ggcaagaagc ctcttgaaac
401 tgctggtcgc ccaaaaatct aaaactgggg tgaccgaggc ttggaccgac
451 ttctttacga agtcaagagg tggcgtctat gcgccacttt cctgcgagcc
501 taccaggcag gagctagaag ccaagagcga gaagctcgaa aaacttctag
551 aagaacagca ccaattcgag gtgcgagcgg ccaagaaata catcaaggaa
601 aagggccgcg gcttcatcaa ctgctggaac gacttgcgaa gtcgtcttag
651 gctggtgaag gacgtcaagg acgaggcgaa ggacaacgcc agagctgctg
701 ccaagatcgg agcagaaatg ttcgccccca ttgacgtgca ggacctctac
751 agctttacag aggtcaagaa ggtggaaacc ggcctcatga aggaggtcgt
801 gaaagagaga aacggcgaag aagagaaaca cctcgagccc atcatggaag
851 aggtgagatc tatcaaagat accgccgaag ccagggacgc cgcctccacc
901 tggataacag agacagttaa gctgaagaac tcaacgctca acgcagatga
951 attgtctcta gccaccatcg cccgctacgt tgaaaacgta ggggacagat
1001 tcaaactcga cattgctagt aagacatatc taaagcaagt cgcatcgatg
1051 tctgtaccaa ttccaactaa caaggacatc aaattgaaga tggtgctgca
1101 gagtccagaa gcacgtgcca ggcgggaacg catggacgtg cttgactctg
1151 tgggttttta gaggggctct gtaccgcctc tggttttgag agcccattcc
1201 ccattctcgg gctgccagag attgcggtca cagacggagc ccggctccgt
1251 aaggttagta gtaatattag ataccttagc caaacccacc taggtcttgt
1301 atataaggca ccaaatgcct ccctgcacaa tgcgcttgta gcagtggaga
1351 gaagagtttt tacagtagga aagggggaca aagcaatcta ccccccccgt
1401 ccagagcatg acattttcac tgatacaatg gattactttc aaaaatccat
1451 tatagaagag gcgggatact gtagaacata tccagcgcaa ctcctggcta
1501 acagctatag cgcaggaaag agggccatgt atcacaaagc cattgcatca
1551 ttgaggactg ttccttatca tcagaaggat gccaatgtgc aagctttctt
1601 gaagaaggaa aaacattgga tgaccaagga cattgccccc cgattgattt
1651 gcccccgcag caagcggtac aacatcatcc taggaactcg tttgaaattc
1701 aacgagaaga agatcatgca cgctatcgat agtgtgttcg gatcccccac
1751 tgtgctttct ggctatgaca actttaaaca aggaagaatc atagccaaga
1801 agtggcaaaa gtttgcatgc cccgtcgcca tcggcgtgga tgctagccgc
1851 tttgaccaac acgtgtcaga gcaggcgctt aagtgggaac acgggatata
1901 caatgggatc ttcggagaca gtgaactggc tcttgcactt gaacaccaaa
1951 tcactaacaa cattaagatg tttgttgaag acaaaatgct taggttcaag
2001 gtaagaggcc acagaatgtc cggtgacatt aataccagca tgggaaataa
2051 gctcataatg tgcggcatga tgcatgcata tttcaagaag ctgggtgttg
2101 aagctgaact ttgcaacaac ggagacgact gtgtcatcat cactgataga
2151 gccaatgaga agctctttga tggcatgtac gaccatttcc tccagtatgg
2201 cttcaacatg gtgaccgaaa aaccagttta cgaactggag caattggagt
2251 tttgccagtc aaaaccggtc tctattaatg ggaagtatag aatggtcaga
2301 aggcccgata gcataggcaa agacagcaca acactactga gcatgctcaa
2351 tcaatccgac gtcaagagct acatgtcggc tgttgctcag tgtggcctgg
2401 tgctcaacgc tggagtaccc atacttgaaa gtttctataa atgcctatat
2451 agaagctcgg ggtacaagaa agtgagtgag gaatttatta aaaacgtcat
2501 atcgtatgga acagatgaga gactacaagg tagacgtacc tataatgaaa
2551 cacctatcac aaaccacagt agaatgtcct actgggaatc attcggagtt
2601 gaccctaaga tacagcaaat cgtcgagagg tactacgacg gtcttacggt
2651 aagtgcccaa ctccagagcg tgaaggtgac gactccacat ctgcaatcaa
2701 tactactttc cataccggaa aaccactcac aaaacgaata ttaattacca
2751 aatcttagct gggtttggga tagggttcat agttagtata ccctgtacat
2801 tagctctcgc gtactttatt tacaataaag tttcagacac cactagagag
2851 gtggtgaatg aattcagtag gccgtagagg acctagacgc gcaaatcaaa
2901 atggcacaag aaggaggcgc cgtagaacag ttcggccagt ggttgtggtc
2951 caaccaaatc gagcaggacc cagacgacga aatggtcgac gcaagggaag
3001 aggaggggca aatcctgtat ttagaccaac aggcgggact gaggtattcg
3051 tattctcagt cgacaacctt aaagccaact cttccggggc aatcaaattc
3101 ggccccagtc tatcgcaatg cccagcgctt tcagacggaa tacttaagtc
3151 ctaccaccgt tacaagatca caagtatccg tgttgagttt aagtcacacg
3201 cgtccgcaac tacggccggc gctatcttta ttgaactcga caccgcgtgc
3251 aaacaatcag ccctggctag ctacattaat tccttcacaa tcagcaggac
3301 cgcctcaaag gtcttcagag ccgaagcgat taacgggaag gaattccagg
3351 aatcaacgat agaccagttt tggatgctct acaaggccaa tggaaccacc
3401 actgacacgg caggacaatt cattatcacg atgagtgtca gtttgatgac
3451 ggccaaatag gtagactcct caacaccgga accgaaacct gcaccagaac
3501 ctacaccaac cccacagcca acgccagctc cacagcccgc acccgaaccg
3551 actcctgcac cagcccccaa aagattcttt gagtatatcg gcactccaac
3601 cggtacaatc tcaacaagag aaaactctga cagtatttct gtcagcaagc
3651 tcggtgggca gtcgatgcag tacatagaga atgagaagtg tgaaacaaag
3701 gtcattgact ccttctggag cactaacaat aacgtgtctg cacaggcagc
3751 cttcgtttac ccagtgccag aaggatcata cagtgtgaac atttcgtgcg
3801 aaggctttca gtccgttgac cacataggag gcaacgagga tggttattgg
3851 attggtttaa ttgcctactc caattcgtcg ggagacaatt ggggggtagg
3901 caactacaaa gggtgcagtt tcaagaactt cttggcaacc aacacttgga
3951 gaccaggcca taaggatctc aagttgaacg attgccagtt cacagatgga
4001 caaatagttg agagggatgc cgtgatgtct ttccatgtgg aagcaacagg
4051 tactgatgcc tgtttctatc tcatggctcc caaaacaatg aaaactgaca
4101 aatacaacta tgttgtctca tatggagggt acacaaacaa acggatggaa
4151 tttggtacca tatctgtgac atgtgatgaa tccgatgttg aggcagaacg
4201 cacaacaagg cacgctgaaa cacccatacg ttccaaacac attcttgtgt
4251 ccgaacagta tgagcaacct ttacccacca taatcgatca aggcttgtgt
4301 gatgtgcaaa ctcccgagca agaacaaaca ctggtggatg aagaagacaa
4351 acagactgtt tccacagaac ctgatatagc actcatggaa tatgaatctg
4401 caacagccga aattccggat gctgaagagg atgttttgcc ctccaaggaa
4451 cagctgtctt ctaaaccggt ggacacgtcc ggcaacaaaa tacctaaacc
4501 caaggaacct gaagtacttg gaacatacca gggacagaac atttaccctg
4551 aagacgtgcc accaattgcg cggcaaaagc tacgcgaagc cgcaaatgca
4601 ccctccacat tactctacga gaaaactccc aagaagagca acaatttctt
4651 gactcgtttt gtggaggcga ataggtcccc tacaactcca gctgccccat
4701 cagtgtcaac tgtatcaaac atgacaaggg aacagctagc ggagtacact
4751 agaattagga gatcccttgg actcacagca gcgaaggaat acaaggcgca
4801 atttcagtga aggtaacacc actagcacaa atcggatcct gggaaacagg
4851 cagaactacg gttcataagc tcgggtaggc cgtcaaccta ccgccgtatc
4901 gtattgtgtt tggccgatgg atgacctcca cgttatcgcc gtttgtattt
4951 ttttttttgc tctaactgtg ctgacagggt taggcgcggt gatcggctgc
5001 tgagccggtt gccttctccc ccctccctcc ttccgctctt ctgtttaagc
5051 aaaaatctct cggtctgtgc gagagaaact caaaaatatc ggggagcttc
5101 ggctcagtga ggggattaac gacccccagt aatggctggt cttggcggac
5151 ctgaacaacc cgctataaga cgaagtggta accgccactg atcaaatggt
5201 gaacatgctt ctgtgtcgta cactgccccg gagcctaccg ggttaacaag
5251 gctattccac cagctcaatg aaatgagagt ggagtggacg gagtgggtga
5301 cttcgtgatg tacacccgat cgtcaggatt gaagacgtta aaactcgacg
5351 acctagtgca agtcgttaaa ctgactaggg tggatacacc acaccctgcc
5401 taacttgtag gcatacccac gatacgaaac gtgggtctct tggagccact
5451 acctgtgatg caaggtaggg tatgagtctt agcaagctct gtgccaggag
5501 atggacataa accatagcaa tcctgcaagt catcttggcg aaccataggt
5551 gaaccgtgcc acgggcctgc ctaccgaaag gaaaagcagt atccaacaca
5601 gcaatgtgtt gggggttaca cccttcaggg tactcttaac gctgacactc
5651 gaaagagcag ttcggcaacc c