Sequence of DPV Torque teno midi virus 3
Small anellovirus isolate 2PoSMA ORF2 and ORF1 genes, complete cds.
ACC No: EF538875
Dated: 2007-09-23 | Length: 2002 | CRC: 1202083197
ID EF538875; SV 1; linear; genomic DNA; STD; VRL; 2002 BP.
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AC EF538875;
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DT 23-SEP-2007 (Rel. 93, Created)
DT 23-SEP-2007 (Rel. 93, Last updated, Version 1)
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DE Small anellovirus isolate 2PoSMA ORF2 and ORF1 genes, complete cds.
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KW .
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OS Small anellovirus
OC Viruses; ssDNA viruses; Anelloviridae; unclassified Anelloviridae.
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RN [1]
RP 1-2002
RX DOI; 10.1099/vir.0.83071-0.
RX PUBMED; 17872521.
RA Biagini P., Uch R., Belhouchet M., Attoui H., Cantaloube J.F.,
RA Brisbarre N., de Micco P.;
RT "Circular genomes related to anelloviruses identified in human and animal
RT samples by using a combined rolling-circle
RT amplification/sequence-independent single primer amplification approach";
RL J. Gen. Virol. 88(Pt 10):2696-2701(2007).
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RN [2]
RP 1-2002
RA Biagini P., Belhouchet M., de Micco P.;
RT ;
RL Submitted (05-APR-2007) to the EMBL/GenBank/DDBJ databases.
RL Service de Virologie Moleculaire, EFS Alpes-Mediterranee, 149, Bd. Baille,
RL Marseille 13005, France
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FH Key Location/Qualifiers
FH
FT source 1. .2002
FT /organism="Small anellovirus"
FT /host="Homo sapiens"
FT /isolate="2PoSMA"
FT /mol_type="genomic DNA"
FT /country="France"
FT /isolation_source="plasma"
FT /db_xref="taxon:393049"
FT CDS 200. .550
FT /codon_start=1
FT /product="ORF2"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A8DMP1"
FT /protein_id="ABU55875.1"
FT /translation="MSLFYKPTKYNGCTKNQMWMSTIGDCHDIHCGCERPFAHLLDSIF
FT PEGHQDRNKTIAEIIQRDLTECLSGGQEEDGGGLPLGSSAANLAIPKEEEEEDTKENIE
FT ELLAAAAAAEER"
FT CDS 397. .1998
FT /codon_start=1
FT /product="ORF1"
FT /db_xref="InterPro:IPR004219"
FT /db_xref="UniProtKB/TrEMBL:A8DMP2"
FT /protein_id="ABU55876.1"
FT /translation="MPFWWPRRRRWWATTRFKRRKPRYTKRRRRRRYKRKYRRAPRRRR
FT RRRRKVRRKRPNLIVRQWQPDSIVLCKIKLFGSLVLGSEGTQYLCYTNEKGAWTPPQQP
FT GGGGFGIETYSLSYLYDQYLLKRCIWTRSNEYKDLCRYLKCKFVFFRHPKIDFVVNYAR
FT QPPFILEKPTYMNCHPIALLLSQHKRVILSKKTDPKGKNRVTLIIKPPKQMITKWFFTK
FT QFAMYDLLQIQAAACTLNYPKLGCCNENLIISIFYLNPQFYQDTNWAQLAQGPYKPYAT
FT NKTDLQYHYKIGTQTGTYVPNYLNDTGTPAYYKSISIEEGFFSPRILNTQYITDKSSPT
FT RLGNIPIGAARYNPEIDDGRGNEIYLVSVVSGHYQKPTEDNLIFKGLPLWLMFFGLVSF
FT IKKIKTASFLELHMFIVKSEYILPKHHDTTRPFFPIVDINFINGKNPYNSYISSTQRQL
FT WYPNVTHQIETINFVVKCGPFLPKLDNDRDSTWELPFKATFYFKWGGSTDAKPKCYRPK
FT RKIQLHCSRYSPKRSL"
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SQ Sequence 2002 BP; 741 A; 428 C; 346 G; 487 T; 0 other;
ef538875 Length: 2002 23-SEP-2007 Type: N Check: 4405 ..
1 atataaccaa gtggggtggc gaatggctga gtttaccccg ctagacggtg
51 cagggaccgg atcgagcgca gcgaggaggt ccccggctgc ccgtgggcgg
101 gagcccgagg tgagtgaaac caccgaggtc taggggcaat tcgggctagg
151 gcagtctagc ggaacgggca agaaacttaa aattatactt gttttacaga
201 tgtcattgtt ctacaaacca actaaataca atggctgcac taaaaatcaa
251 atgtggatgt cgacaatagg tgactgccat gacattcact gtggatgtga
301 aagacctttt gcccatcttc tagacagcat ttttccagaa ggacaccaag
351 acagaaacaa aaccattgct gaaattatac aaagagatct tacagaatgc
401 ctttctggtg gccaagaaga agacggtggt gggctaccac tcggttcaag
451 cgccgcaaac ctcgctatac caaaagaaga agaagaagaa gatacaaaag
501 aaaatataga agagctcctc gccgccgccg ccgccgccga agaaaggtaa
551 gaagaaaaag acctaactta attgttagac aatggcaacc tgactctata
601 gtactctgta aaattaaact gtttggcagc ttagtactag gatcagaagg
651 tacccaatac ctatgttaca ctaatgaaaa aggagcatgg actccaccac
701 aacaacctgg agggggagga tttggaattg aaacatacag cctatcctac
751 ctatatgatc aatacttatt aaaaagatgc atttggacca gatcaaatga
801 atacaaagac ctttgcagat atctaaaatg caaatttgta ttctttagac
851 acccaaaaat agactttgtt gttaactatg ccagacaacc tccatttatt
901 cttgaaaaac ctacctacat gaactgccat ccaatagcac tgcttttatc
951 acaacacaaa agagttatac taagtaagaa aacagatcct aaaggtaaaa
1001 acagagtaac attaattata aaaccaccta aacaaatgat aaccaaatgg
1051 ttttttacta aacaatttgc tatgtatgat ttactacaaa tacaagcagc
1101 agcctgcaca ttaaactatc ccaaacttgg ctgctgcaat gaaaacttaa
1151 taatttcaat attttacctt aaccctcaat tttaccaaga cacaaattgg
1201 gcacaacttg cacaaggtcc atacaaacca tatgcaacaa ataaaacaga
1251 tttacaatac cactacaaaa ttggtactca aacaggtaca tatgtaccaa
1301 actacctaaa cgacacaggc acaccagcct actacaaaag tatatctata
1351 gaagaaggct tcttttcacc aagaatatta aacactcaat acataacaga
1401 caaaagcagt cccaccagac taggaaacat acccatagga gcagcaagat
1451 ataaccctga aatagatgat ggtagaggta atgaaatata cctagtttct
1501 gtagtgtcag gccattacca aaaaccaact gaagataact taatatttaa
1551 aggcctacca ctatggctca tgttttttgg actagttagt ttcattaaaa
1601 aaattaagac tgcttcattt ttagagctac acatgtttat tgttaaatct
1651 gaatacatac tacctaaaca ccatgataca accagacctt tctttcccat
1701 agtagatata aacttcataa atggtaaaaa cccatacaac tcctacatat
1751 cctctacaca aagacaacta tggtacccaa atgttaccca tcaaattgaa
1801 accattaatt ttgttgtaaa atgtggacca tttcttccta aactagacaa
1851 tgatagagac agcacatggg aattaccttt taaagcaact ttttatttta
1901 aatggggggg gtccacagat gccaaaccaa aatgttacag acccaaaaga
1951 aaaatccagc tacattgttc ccgatacagt ccaaaaagga gtctttaaaa
2001 ct