Sequence of DPV Torque teno mini virus 12
TTV-like mini virus isolate LIL-y3 ORF2, ORF1, ORF3, and ORF4 genes, complete cds.
ACC No: EF538882
Dated: 2007-09-23 | Length: 2912 | CRC: -968834557
ID EF538882; SV 1; linear; genomic DNA; STD; VRL; 2912 BP.
XX
AC EF538882;
XX
DT 23-SEP-2007 (Rel. 93, Created)
DT 23-SEP-2007 (Rel. 93, Last updated, Version 1)
XX
DE TTV-like mini virus isolate LIL-y3 ORF2, ORF1, ORF3, and ORF4 genes,
DE complete cds.
XX
KW .
XX
OS TTV-like mini virus
OC Viruses; ssDNA viruses; Anelloviridae; unclassified Anelloviridae.
XX
RN [1]
RP 1-2912
RX DOI; 10.1099/vir.0.83071-0.
RX PUBMED; 17872521.
RA Biagini P., Uch R., Belhouchet M., Attoui H., Cantaloube J.F.,
RA Brisbarre N., de Micco P.;
RT "Circular genomes related to anelloviruses identified in human and animal
RT samples by using a combined rolling-circle
RT amplification/sequence-independent single primer amplification approach";
RL J. Gen. Virol. 88(Pt 10):2696-2701(2007).
XX
RN [2]
RP 1-2912
RA Biagini P., Belhouchet M., de Micco P.;
RT ;
RL Submitted (05-APR-2007) to the EMBL/GenBank/DDBJ databases.
RL Service de Virologie Moleculaire, EFS Alpes-Mediterranee, 149, Bd. Baille,
RL Marseille 13005, France
XX
FH Key Location/Qualifiers
FH
FT source 1. .2912
FT /organism="TTV-like mini virus"
FT /host="Homo sapiens"
FT /isolate="LIL-y3"
FT /mol_type="genomic DNA"
FT /country="France"
FT /isolation_source="plasma"
FT /db_xref="taxon:93678"
FT CDS 182. .481
FT /codon_start=1
FT /product="ORF2"
FT /db_xref="InterPro:IPR004118"
FT /db_xref="UniProtKB/TrEMBL:A8DMR1"
FT /protein_id="ABU55895.1"
FT /translation="MSDYYKKLTIGPRHAQLNWTNAIVTLHDLQCQCDDPLCHTIETII
FT NQEKSLKFSKGLSEKIKPCLTTGEAGGVDVVEDFGDDELERLFAEDGTGDTDTG"
FT CDS 370. .2355
FT /codon_start=1
FT /product="ORF1"
FT /db_xref="InterPro:IPR004219"
FT /db_xref="UniProtKB/TrEMBL:A8DMR2"
FT /protein_id="ABU55896.1"
FT /translation="MPYYWRGWRRRRRRRFWRRRAGAPFRRRRYWRYRYRVRRLRRKPK
FT KLPIKQWQPTKMRRLTVTGKYPLFEGTSERIGNNNTQSIDTIAPYLFPSGGLFSITVFT
FT LKGLYELHLKARNWWSISNCNLPLIKYRGCKITLYRNVDVDYVTVYTRCGSLTATEELY
FT RSCQPSLLLLNKHKKVLTCKKNNNKRKISKTIKIPPPTLMQNKWYFQKDFAKYPLVMIL
FT SAALSLDRYYTSANSISSTIGFASINTTIFQYSDFKSPNLTQPYKPNDEYWLRTWTNQT
FT ITNFSAVETQRVILLGNTNDYQPGEPMGDEKAHYEDYFKTKTKWGNPFYAPYFEPEPQK
FT IFMIKNLNKLQTANPTEKIQNLNCTLLPPEKTVLTICRYNPQNDRSAHNALYASPVTTA
FT RTKWGATTKPELNTEGLPLWLLSFGFHDWLLKSEKVQRLDLDYVYVILSDYITPKMEHY
FT VPVDPNFTQGRSPFEITDHMRPPDVGYWFPKTSYQHTVFSEIINTGPGTVKLPPRISVE
FT ASMKYKFYFTLGGCPPPMDNVCDPQAQPDFPQPGNIISPTLLQDPEYPIEYYLQAFDER
FT RGLLTKKAAKRIKKDYETQQAILSSTGQTAMDVQLKTPETTSTEDSSEEEKEPQTLQFQ
FT LQRHKRKQRKLRHRILQLLKLAENMS"
FT CDS 1979. .2332
FT /codon_start=1
FT /product="ORF3"
FT /db_xref="InterPro:IPR008474"
FT /db_xref="UniProtKB/TrEMBL:A8DMR3"
FT /protein_id="ABU55897.1"
FT /translation="MFVIHRPNQTFLNPVTSYRQLYCRIQNIPSNTTCKPLTSEGDSLQ
FT KRLQNESKKTMKLNKLFCHLQDKLQWTSSSKPPRQHRQRTHRRRKKSRKHCSSSSSDTS
FT ESNGNSDTESSSC"
FT CDS 2379. .2573
FT /codon_start=1
FT /product="ORF4"
FT /db_xref="UniProtKB/TrEMBL:A8DMR4"
FT /protein_id="ABU55898.1"
FT /translation="MFDPPAPKNRRITGPDFETELQLAKWMHKPPRYYHNDKPFYPWLP
FT LEPLVNQMPNVNFKLNFTE"
XX
SQ Sequence 2912 BP; 1074 A; 656 C; 483 G; 699 T; 0 other;
ef538882 Length: 2912 23-SEP-2007 Type: N Check: 9441 ..
1 ataaaaataa ctacacagac gaatggctga gtttatgccg ctagacggag
51 gacgcatcag atactgactg cggactggac ttgggcgggt gctgaaggtg
101 agtgaaacca ccgaaatcaa ggggcaattc gggctagtcc agtctagcgg
151 aacgggcaag taacttaaat ttgtttttca gatgtcagat tattataaaa
201 aactaacaat aggaccacgc catgctcagc taaactggac caacgctatt
251 gttacccttc acgacctcca atgccaatgt gacgaccctc tgtgccacac
301 catcgaaacc attataaatc aagaaaaatc tttaaaattt tcaaaaggat
351 tatctgaaaa aattaaacca tgccttacta ctggagaggc tggcggcgta
401 gacgtcgtag aagattttgg agacgacgag ctggagcgcc ttttcgcaga
451 agacggtact ggagatacag ataccgggta aggagactac gtcgaaaacc
501 taaaaaatta cctattaaac aatggcaacc aacaaaaatg cggaggctga
551 ctgtaacagg aaaataccca ctatttgagg gtacctccga aagaattgga
601 aataacaata ctcaaagcat agacacaatt gctccttact tatttccttc
651 aggaggacta ttttcaataa ctgtatttac tttaaaagga ctttatgaac
701 ttcacttaaa agctagaaac tggtggagta tttcaaattg taacctacca
751 ctgataaaat atagaggttg taaaataact ttatatagaa atgttgatgt
801 tgactatgta actgtatata ctagatgtgg ttcactaact gctacagaag
851 aactatatag atcttgccaa ccatctttac tactattaaa caaacacaaa
901 aaagtactaa catgcaaaaa gaataacaac aaaagaaaaa tttctaaaac
951 cattaaaata ccaccaccaa cattaatgca aaacaaatgg tattttcaaa
1001 aagactttgc aaagtatcca ttagtaatga tactatcagc agccttaagc
1051 ttagacagat actatacttc agcaaattca atttctagca ctataggatt
1101 tgcatccatt aacacaacta tttttcaata cagcgatttt aaatccccaa
1151 atttaacgca accatacaaa ccaaatgatg aatactggtt aagaacatgg
1201 acaaaccaaa caataacaaa tttcagtgcc gtagaaaccc aacgcgtaat
1251 tttactagga aatacaaatg attatcaacc tggagaaccc atgggagacg
1301 aaaaggcaca ttatgaggat tactttaaaa caaaaacaaa atggggaaac
1351 cccttttatg ctccatactt tgagcctgag ccacaaaaga tatttatgat
1401 aaaaaattta aacaaactac aaactgcaaa cccaactgaa aaaatacaaa
1451 acttaaactg cacattacta ccacctgaaa aaaccgtact aactatttgc
1501 agatataatc cacaaaatga cagatcagcc cataatgctt tatatgctag
1551 ccctgtaaca acagctagaa caaaatgggg agccactacc aagccagaat
1601 taaacacaga aggccttcca ctatggttat tatcatttgg ttttcatgac
1651 tggttactaa aatcagaaaa agtacaaaga ttagacttag actatgtgta
1701 tgttatatta agtgactata taacacctaa aatggaacat tatgtaccag
1751 ttgacccaaa ctttacacaa ggcagaagcc catttgaaat aacagaccac
1801 atgagaccac ctgatgtagg atattggttt cctaaaacca gctatcagca
1851 cactgtattc tctgagatta ttaacacggg ccctggcact gtaaaactac
1901 caccaagaat atccgttgag gcaagcatga aatacaaatt ttattttaca
1951 cttggaggct gtccacctcc aatggacaat gtttgtgatc cacaggccca
2001 accagacttt cctcaacccg gtaacatcat atcgccaact ttattgcagg
2051 atccagaata tcccatcgaa tactacttgc aagcctttga cgagcgaagg
2101 ggactcctta caaaaaaggc tgcaaaacga atcaaaaaag actatgaaac
2151 tcaacaagct attttgtcat ctacaggaca aactgcaatg gacgtccagc
2201 tcaaaacccc cgagacaaca tcgacagagg actcatcgga ggaggaaaaa
2251 gagccgcaaa cattgcagtt ccagctccag cgacacaagc gaaagcaacg
2301 gaaactcaga cacagaatcc tccagttgtt aaaactagcc gaaaatatgt
2351 cataaaacgt agtactataa ctgtaaatat gtttgatccc cctgctccta
2401 aaaacaggag aataacaggc ccagactttg aaactgaatt acaattagct
2451 aaatggatgc acaaaccacc cagatattat cataatgata aacctttcta
2501 tccctggcta cctttagaac ctcttgtaaa ccaaatgcct aatgtaaatt
2551 tcaaactcaa ctttactgaa taaaggccag cattaattca ctctcgggtg
2601 gtccatttat ataagtttaa cttaaataaa cagcctccgc ctccctaata
2651 cgcaggcgca ctgggggctc cgcccccaaa cccccaaggg ggtccgcccc
2701 cttaaacccc caggggggac acccccttta ccccccgaaa accacataat
2751 tagcattgcc gaccgcaaac tgaacaggaa accacaaaat ttgcattgcc
2801 gaccacaaac cgtcaaacac ttccctattt tagactactt ctgcttttac
2851 tcatacatat tcataaaata aattagtaat catgatcaca tcctgggagg
2901 agacaataca ct