Sequence of DPV Plum pox virus

plum pox virus strain M isolate SK2 coat protein gene, partial cds.

ACC No: EF626550

Dated: 2008-10-05 | Length: 990 | CRC: 190532903

                
ID   EF626550; SV 1; linear; genomic RNA; STD; VRL; 990 BP.
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AC   EF626550;
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DT   05-OCT-2008 (Rel. 97, Created)
DT   05-OCT-2008 (Rel. 97, Last updated, Version 1)
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DE   plum pox virus strain M isolate SK2 coat protein gene, partial cds.
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KW   .
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OS   Plum pox virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-990
RA   Dallot S., Glasa M., Paunovic S., Kominek P., Kamenova I., Jevremovic D.,
RA   Labonne G.;
RT   "Genetic structure of Plum pox virus strain M in Europe";
RL   Unpublished.
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RN   [2]
RP   1-990
RA   Dallot S., Glasa M., Paunovic S., Kominek P., Kamenova I., Jevremovic D.,
RA   Labonne G.;
RT   ;
RL   Submitted (22-MAY-2007) to the EMBL/GenBank/DDBJ databases.
RL   UMR BGPI, INRA, Campus international de Baillarguet TA A 54/K, Montpellier
RL   cedex 5 34398, France
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FH   Key             Location/Qualifiers
FH
FT   source          1. .990
FT                   /organism="Plum pox virus"
FT                   /specific_host="peach"
FT                   /strain="M"
FT                   /isolate="SK2"
FT                   /mol_type="genomic RNA"
FT                   /country="Slovakia"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:12211"
FT   CDS             <1. .>990
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="ABU97774.1"
FT                   /translation="ADEREDDEEVDAGRPTVVTAPAATVATTQPAPVIQPAPQTTAPMF
FT                   NPIFTPATTQPAVRPVPPISGTKPRSFGVYGNEDASPSTSNTLVNTGRDRDVDAGSIGT
FT                   FAVPRLKTMTSKLSLPKVKGKAIMNLNHLAHYSPAQVDLSNTRAPQSCFQTWYEGVKRD
FT                   YDVTDEEMSIILNGLMVWCIENGTSPNINGMWVMMDGETQVEYPIKPLLDHAKPTFRQI
FT                   MAHFSNVAEAYIEKRNYEKAYMPRYGIQRNLTDYSLARYAFDFYEMTSTTPVRAREAHI
FT                   QMKAAALRNVQNRLFGLDGNVGTQEEDTERHTAGDVNRNMHNLLGVRGV"
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SQ   Sequence 990 BP; 314 A; 217 C; 241 G; 218 T; 0 other;

ef626550 Length: 990  05-OCT-2008  Type: N  Check: 4527  ..

       1  gctgatgaaa gggaggacga tgaagaagtt gatgcaggaa gacctactgt
      51  ggtaactgca ccggcagcaa ctgtggcaac aactcaacca gctccagtga
     101  tacaacctgc accccaaacc acagcaccaa tgttcaaccc cattttcact
     151  ccagcaacaa ctcagcctgc ggtaagacca gttcctccaa tttcagggac
     201  caaaccgcgg tcttttggag tttatggaaa tgaagacgca tcacctagca
     251  cctcaaacac tttggtgaat acaggaaggg atagggacgt cgatgcagga
     301  tcgattggaa ctttcgcagt gccacgtcta aaaacaatga catcgaagtt
     351  atccctaccg aaggtgaagg gaaaggcaat tatgaactta aatcatttgg
     401  cacattacag tcctgcacaa gttgacttgt caaacacacg agctccacaa
     451  tcttgcttcc agacttggta tgaaggagtt aagcgtgatt atgatgtcac
     501  agatgaggaa atgagcatca ttttgaatgg cttgatggtt tggtgcatcg
     551  aaaacggaac gtctccaaac atcaatggaa tgtgggtgat gatggatggg
     601  gagacacaag tggagtatcc aataaagcca ttgttggatc acgcgaaacc
     651  cacttttaga caaattatgg cacatttcag taacgtggct gaagcgtaca
     701  ttgaaaaacg aaattacgag aaagcataca tgccaaggta tggaattcag
     751  cgcaacctga cagattacag tctcgccaga tacgcctttg atttttacga
     801  aatgacttca acaacgcctg tgcgtgcacg tgaagctcat atacagatga
     851  aggcagcagc attgagaaat gttcaaaatc gtttatttgg cttggatgga
     901  aacgtcggaa cacaagaaga ggacacagag aggcacaccg ctggtgacgt
     951  gaatcgcaac atgcacaacc tcctcggtgt gaggggagtg