Sequence of DPV Plum pox virus

plum pox virus strain M isolate RS2 polyprotein gene, partial cds.

ACC No: EF626571

Dated: 2008-10-05 | Length: 723 | CRC: 1479039217

                
ID   EF626571; SV 1; linear; genomic RNA; STD; VRL; 723 BP.
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AC   EF626571;
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DT   05-OCT-2008 (Rel. 97, Created)
DT   05-OCT-2008 (Rel. 97, Last updated, Version 1)
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DE   plum pox virus strain M isolate RS2 polyprotein gene, partial cds.
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KW   .
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OS   Plum pox virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-723
RA   Dallot S., Glasa M., Paunovic S., Kominek P., Kamenova I., Jevremovic D.,
RA   Labonne G.;
RT   "Genetic structure of Plum pox virus strain M in Europe";
RL   Unpublished.
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RN   [2]
RP   1-723
RA   Dallot S., Glasa M., Paunovic S., Kominek P., Kamenova I., Jevremovic D.,
RA   Labonne G.;
RT   ;
RL   Submitted (23-MAY-2007) to the EMBL/GenBank/DDBJ databases.
RL   UMR BGPI, INRA, Campus International de Baillarguet TA A 54/K, Montpellier
RL   cedex 5 34398, France
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FH   Key             Location/Qualifiers
FH
FT   source          1. .723
FT                   /organism="Plum pox virus"
FT                   /specific_host="plum"
FT                   /strain="M"
FT                   /isolate="RS2"
FT                   /mol_type="genomic RNA"
FT                   /country="Serbia and Montenegro"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:12211"
FT   CDS             <1. .>723
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /note="encodes P3, 6K1 and CI protein"
FT                   /protein_id="ABU97741.1"
FT                   /translation="SQRWRKHIPKPFIPKDAADLGGRYDISVRSLLGSQYKRLKDAVRR
FT                   KRDDVVCYTHQSMGKLFCKAIGISTSFLPSTLKMFDMLIIFGLLLSIGATCNSMINEHK
FT                   HLKQVAADREDKKRFKRLQVLYTRLLEKIGCTPTADEFLEYVQGENPDLSKYAEDLIGD
FT                   GQVVVHQSKRDSQANLERVVAFVALVMMLFDSERSDGVYKILNKLKGVMGSIDQTVHHQ
FT                   SLDDIEDMLDEKKLTVDFV"
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SQ   Sequence 723 BP; 228 A; 138 C; 170 G; 187 T; 0 other;

ef626571 Length: 723  05-OCT-2008  Type: N  Check: 8069  ..

       1  atcgcagcgg tggcgaaaac atataccaaa acctttcatc ccgaaagacg
      51  cagcagattt aggaggcagg tacgacatct ccgttcggtc attacttggc
     101  agccaataca aacgcctgaa agacgcggtt cggcggaaaa gagacgacgt
     151  tgtttgttac acacaccagt cgatggggaa gctattctgc aaagctatcg
     201  gaatttccac aagttttctt ccaagcactc tgaagatgtt tgacatgctc
     251  atcatatttg gtctcctgct ttcaatagga gccacatgca attcaatgat
     301  taatgagcac aaacatttaa agcaagttgc tgccgatcgt gaagataaga
     351  aaagattcaa gagattgcag gtcttgtaca cgagattatt agaaaagatt
     401  ggttgcacac caacagcgga tgaatttctt gaatatgtgc aaggtgagaa
     451  ccctgatcta tcgaaatatg cagaggactt gatcggagat gggcaagttg
     501  ttgtgcatca aagcaaaaga gattcacaag ctaatctgga acgagtcgta
     551  gcatttgtag cccttgttat gatgcttttt gattcggaac ggagtgatgg
     601  tgtttacaaa atcctcaata agcttaaagg cgtcatggga agtattgatc
     651  aaactgttca ccatcaaagt ttggacgaca ttgaagacat gttggacgaa
     701  aagaaattga cagtcgattt cgt