Sequence of DPV Imjin virus
Imjin virus strain Cl 04-55 glycoprotein mRNA, complete cds.
ACC No: EF641799
Dated: 2009-06-03 | Length: 3616 | CRC: -926090670
ID EF641799; SV 1; linear; mRNA; STD; VRL; 3616 BP.
XX
AC EF641799;
XX
DT 24-OCT-2008 (Rel. 97, Created)
DT 03-JUN-2009 (Rel. 101, Last updated, Version 2)
XX
DE Imjin virus strain Cl 04-55 glycoprotein mRNA, complete cds.
XX
KW .
XX
OS Imjin virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC unclassified Hantavirus.
XX
RN [1]
RP 1-3616
RX DOI; 10.1073/pnas.0808942105.
RX PUBMED; 18854415.
RA Arai S., Ohdachi S.D., Asakawa M., Kang H.J., Mocz G., Arikawa J.,
RA Okabe N., Yanagihara R.;
RT "Molecular phylogeny of a newfound hantavirus in the Japanese shrew mole
RT (Urotrichus talpoides)";
RL Proc. Natl. Acad. Sci. U.S.A. 105(42):16296-16301(2008).
XX
RN [2]
RP 1-3616
RX DOI; 10.1128/JVI.00371-09.
RX PUBMED; 19357167.
RA Song J.W., Kang H.J., Gu S.H., Moon S.S., Bennett S.N., Song K.J.,
RA Baek L.J., Kim H.C., O'Guinn M.L., Chong S.T., Klein T.A., Yanagihara R.;
RT "Characterization of Imjin virus, a newly isolated hantavirus from the
RT Ussuri white-toothed shrew (Crocidura lasiura)";
RL J. Virol. 83(12):6184-6191(2009).
XX
RN [3]
RP 1-3616
RA Song J.-W.;
RT ;
RL Submitted (31-MAY-2007) to the EMBL/GenBank/DDBJ databases.
RL Department of Microbiology, College of Medicine, Korea University, 126-1,
RL Anam-dong, 5-Ga, Sungbuk-Gu, Seoul 136-705, Korea
XX
FH Key Location/Qualifiers
FH
FT source 1. .3616
FT /organism="Imjin virus"
FT /segment="M"
FT /host="Crocidura lasiura"
FT /lab_host="Vero E6 cells"
FT /strain="Cl 04-55"
FT /mol_type="mRNA"
FT /country="South Korea"
FT /isolation_source="lung tissue"
FT /db_xref="taxon:467989"
FT CDS 41. .3403
FT /codon_start=1
FT /product="glycoprotein"
FT /db_xref="GOA:B6RD40"
FT /db_xref="InterPro:IPR012316"
FT /db_xref="UniProtKB/TrEMBL:B6RD40"
FT /protein_id="ABV21399.1"
FT /translation="MNNRLIIVLLQSLLQVYCSIHSRITLECPHYGVSDAEYVWGKVKI
FT GRFAIDDIKHIQFENTCPFSITSHNIQTGMKIISWTEKETHDSSAVYFDKVATHSEKTG
FT DFKSLCGSVSYLTYPFKSGNSYCLNLHCNQTVCDTEVIVFIKAISCVAYDSCVLYHKDI
FT KVQLNFRKTHCVKSVLHEKKCFQPDFTTGFNPKLHMRFSLPSVCVFMPSDGNAEGTKEI
FT VGQNSCTDIKLNGWYSCIVGHYSMIFVHSNGKMRQIHLNTKFRKNPQGDDHSELRSGST
FT HIVGYKNMTTISNKVNTLAAFKGATDYSSLFYNIQNTDKKPLLLAGYTPTFHWRECGTH
FT LIPAVWTSYIDVWGTIIESDECNIFCTLSGPGASCEAFSPTGIFLLNSTTCLIPHTHRF
FT KGLGDQITFICQRVDTDLEFYCNGRHKIIRTKTLIIGQCIQTFTSFFSLFPGVAHSLAV
FT ELCVPGFHGFITVCIVSTFCFGWLWIPGLTWLILQFLKFVVMFVSTNSVDQRFKQILQK
FT IKAEYRLTIGDTSCDFCKHECQTSLESDSHILYCKQGKCPYCLNDIYPSPLALQEHYKV
FT CMLTDRFTRQIKEKILNVEAKPHSGLYKRLCVFQYKNRCYIFTIWIFLLIFQMLVWAAS
FT AEVINFEKEWNDNVHGIGSEKLITDLELDFSIPSSSGFTYTRNLEGPMPNQKIHFALKL
FT SRQKTRATIQKLGHWVDARWNIRTVFHCYGACSKFEYPWKSATCNREKDFEYQTGWGCN
FT PGDCPGINTGCTACGLYLDKPKSVATVVKLIQLDYEREVCIQIGTHSECKKITGNDCLS
FT THGVKVCLLSTTVKLTATDTLVFFGPLQQGAVVFKNWCTSTCSYGDPGDIMLTENGEYN
FT CPDFTGSFERTCRFGQTPVCEYNGNNMGGYKRYLATKDSFFSINMTDPIIDKTKLEWFD
FT PDSTSRDHINVQVSKDVDFENLGNNPCRLTLKTTGIEGAWGSETGFALTCKVSLLECNS
FT FVTMIKACDKAMCYGAYSTTLQRGDNTITIQGRGGHSGSSFKCCHNDDCSTAGMLADAP
FT HLSRLKSQDGDNSEIYSDGANECRITCWFNKTSEWVMGMLSGNWLVILVLVGIMLFSVF
FT LFCFFCPAKTHQA"
XX
SQ Sequence 3616 BP; 1187 A; 617 C; 724 G; 1088 T; 0 other;
ef641799 Length: 3616 03-JUN-2009 Type: N Check: 3479 ..
1 tagtagtaga ctccgcaatt ccaagcaata gctaaacaca atgaataaca
51 ggcttatcat tgtgttgttg cagagcctac tacaagtata ttgctctatc
101 catagcagga ttactttaga gtgtcctcac tatggcgtta gtgatgctga
151 gtatgtttgg ggaaaagtca aaattggccg ctttgcaatt gatgatatta
201 agcatatcca gtttgaaaat acatgcccat tctctatcac tagtcataat
251 atccaaactg gtatgaagat aatatcctgg acagagaaag agacccatga
301 tagttcagca gtttatttcg ataaagttgc aacgcactct gaaaagactg
351 gggactttaa gtcactttgt ggtagtgtaa gttatcttac ataccctttt
401 aaaagtggga actcttactg cttaaactta cattgtaatc aaacagtttg
451 tgacacagaa gtgattgtct tcataaaggc tatctcctgt gttgcatatg
501 actcatgtgt gctttatcat aaagacataa aggtccaatt aaattttagg
551 aaaacacact gtgtcaaatc agttttacac gaaaagaaat gttttcaacc
601 agatttcacc accggattta acccaaagct ccacatgcgg ttcagtttac
651 cttcggtctg tgtcttcatg cctagtgatg gtaatgctga aggtaccaaa
701 gaaattgttg gtcaaaactc atgtactgat atcaagctga atggttggta
751 tagctgtata gttggtcatt attcaatgat ttttgtacac agtaatggta
801 aaatgaggca aatacatctt aatacaaaat ttaggaaaaa tccacaaggt
851 gatgaccaca gtgaactaag atctggttct acccatatag taggatataa
901 aaatatgact actatatcta acaaagtaaa caccctagca gcattcaaag
951 gtgcaactga ctacagctcc ttattttata atatacaaaa cacagataaa
1001 aaaccattac ttcttgcagg ttacactcct acatttcatt ggagagagtg
1051 tgggacacat ttaatacctg ctgtatggac aagttacatt gatgtctggg
1101 ggactattat agaatctgat gagtgtaata tattctgcac cttaagtggg
1151 cctggggcaa gttgtgaggc attttctcca acaggaatat ttctcttaaa
1201 ctcaacaacc tgtttaatcc cacacacaca cagatttaaa ggccttggag
1251 atcaaataac atttatatgc caacgggtag acactgatct agaattttac
1301 tgcaatggaa gacataagat aattaggact aaaacattaa ttataggtca
1351 gtgtatacaa actttcacca gtttcttctc cctatttcct ggagtcgcac
1401 attcactagc agtagagctt tgtgtcccag gctttcatgg cttcattaca
1451 gtttgtatag tatcaacctt ttgctttggt tggttatgga tccctggtct
1501 aacatggctc atattgcagt ttctaaaatt tgttgttatg tttgtgagta
1551 ccaatagtgt tgatcaaaga tttaaacaaa ttttgcaaaa gataaaagca
1601 gagtatcgat tgacaattgg tgatacaagt tgtgactttt gtaagcatga
1651 atgtcaaaca agcctagaaa gtgatagcca cattctatat tgtaagcaag
1701 gaaaatgccc atactgcctg aatgatatat acccatcacc tttagcattg
1751 caagagcatt acaaagtgtg tatgctgaca gatcgcttta cacgtcaaat
1801 aaaggagaaa attttaaatg ttgaagctaa gccacatagt gggctgtata
1851 agaggctctg tgtgtttcaa tataaaaaca ggtgttatat atttactatt
1901 tggatatttc ttttaatatt tcaaatgttg gtttgggcag ccagtgcaga
1951 agtaataaac tttgaaaagg aatggaatga taatgtccat gggataggaa
2001 gtgaaaagct tataactgac ttggaattag acttctcaat accatcatct
2051 tcaggattta catatacccg gaatctagaa ggaccaatgc ctaaccagaa
2101 gatacatttt gctttaaagt tatcaagaca gaagacaaga gccacgattc
2151 agaaactagg acactgggtg gatgccaggt ggaatattag gactgttttt
2201 cattgctatg gtgcatgctc aaagtttgag tatccatgga agagtgcaac
2251 atgtaacaga gaaaaagatt ttgagtacca gactggatgg ggttgtaatc
2301 ccggtgattg tccaggaatt aatacagggt gtacagcatg tggcttatat
2351 ttagataagc caaagtcagt agccactgtg gttaaattga tacagttgga
2401 ttatgagcgg gaggtttgta tacagatagg tactcatagt gaatgtaaga
2451 aaataactgg aaatgactgt ctcagcacac atggggtcaa ggtatgtcta
2501 cttagcacaa cagtcaagtt aactgcaaca gatacacttg tattctttgg
2551 acctctgcaa caaggtgcag tggtttttaa aaattggtgt actagcactt
2601 gctcttatgg tgatccaggg gatataatgt tgactgaaaa tggagaatat
2651 aattgccctg atttcacagg ttcttttgag agaacctgta ggtttggcca
2701 gacacctgtg tgtgaatata atgggaacaa tatgggagga tacaagagat
2751 atcttgcaac aaaagattct ttcttttcaa taaatatgac tgatcctatt
2801 atagataaga ctaaattaga gtggtttgac cctgatagta catctaggga
2851 ccatatcaat gttcaagtga gtaaagatgt tgactttgaa aatctaggaa
2901 acaatccatg taggctaaca ttaaagacta cagggataga aggtgcatgg
2951 ggctcagaaa ctggttttgc attaacctgc aaagtttccc tattagaatg
3001 taattcattc gttacaatga taaaggcatg tgataaagca atgtgctatg
3051 gggcatattc aacaactcta cagaggggtg acaatacaat aactattcaa
3101 ggaaggggtg gtcatagtgg atcaagtttt aagtgttgcc acaatgatga
3151 ctgctcaact gcaggcatgc tagcagatgc tcctcacctg tctaggttga
3201 aatctcagga tggtgataac tcagaaatat attcagacgg ggcaaatgag
3251 tgtaggataa catgctggtt caataaaaca agcgaatggg tgatgggcat
3301 gctgtccgga aattggttag tcatccttgt ccttgtgggc attatgctat
3351 ttagtgtctt tttattctgc ttcttttgcc ctgccaaaac ccaccaagca
3401 taattcacta gctatatccc ttcatactaa caatactatg tatactctag
3451 cttctaacat agcatgtata aaataaataa aaataaaata aaaaaataaa
3501 ataaaaataa aaactataaa aaatacacta actgctttat cccctaacac
3551 aaaatgtctc tagtgttaca ctagatggca tttctttgtc ttttgttctt
3601 gcggagcata ctacta