Sequence of DPV Imjin virus

Imjin virus strain Cl 04-55 nucleocapsid protein mRNA, complete cds.

ACC No: EF641805

Dated: 2009-06-03 | Length: 1574 | CRC: 1778471329

                
ID   EF641805; SV 1; linear; mRNA; STD; VRL; 1574 BP.
XX
AC   EF641805;
XX
DT   24-OCT-2008 (Rel. 97, Created)
DT   03-JUN-2009 (Rel. 101, Last updated, Version 2)
XX
DE   Imjin virus strain Cl 04-55 nucleocapsid protein mRNA, complete cds.
XX
KW   .
XX
OS   Imjin virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC   unclassified Hantavirus.
XX
RN   [1]
RP   1-1574
RX   DOI; 10.1073/pnas.0808942105.
RX   PUBMED; 18854415.
RA   Arai S., Ohdachi S.D., Asakawa M., Kang H.J., Mocz G., Arikawa J.,
RA   Okabe N., Yanagihara R.;
RT   "Molecular phylogeny of a newfound hantavirus in the Japanese shrew mole
RT   (Urotrichus talpoides)";
RL   Proc. Natl. Acad. Sci. U.S.A. 105(42):16296-16301(2008).
XX
RN   [2]
RP   1-1574
RX   DOI; 10.1128/JVI.00371-09.
RX   PUBMED; 19357167.
RA   Song J.W., Kang H.J., Gu S.H., Moon S.S., Bennett S.N., Song K.J.,
RA   Baek L.J., Kim H.C., O'Guinn M.L., Chong S.T., Klein T.A., Yanagihara R.;
RT   "Characterization of Imjin virus, a newly isolated hantavirus from the
RT   Ussuri white-toothed shrew (Crocidura lasiura)";
RL   J. Virol. 83(12):6184-6191(2009).
XX
RN   [3]
RP   1-1574
RA   Song J.-W.;
RT   ;
RL   Submitted (01-JUN-2007) to the EMBL/GenBank/DDBJ databases.
RL   Department of Microbiology, College of Medicine, Korea University, 126-1,
RL   Anam-dong, 5-Ga, Sungbuk-Gu, Seoul 136-705, Korea
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1574
FT                   /organism="Imjin virus"
FT                   /segment="S"
FT                   /host="Crocidura lasiura"
FT                   /lab_host="Vero E6 cells"
FT                   /strain="Cl 04-55"
FT                   /mol_type="mRNA"
FT                   /country="South Korea"
FT                   /isolation_source="lung tissue"
FT                   /db_xref="taxon:467989"
FT   CDS             68. .1378
FT                   /codon_start=1
FT                   /product="nucleocapsid protein"
FT                   /db_xref="GOA:B6RD46"
FT                   /db_xref="InterPro:IPR002214"
FT                   /db_xref="UniProtKB/TrEMBL:B6RD46"
FT                   /protein_id="ABV21396.1"
FT                   /translation="MAQSRITKEDIQKLEDAKKQIEIQLSSSIQKLATETEQFGPDPDP
FT                   IQLQAVRQRSSVIEGYKEKLRDLESQLSIAYATFADEEEERKKRKEVPGVEEGDYLSQK
FT                   SSLRYGNVIDLNPLNLEEPAGQTANWNRIFEYITTITQVLLLKGLYILTTRGRQTSKDN
FT                   KGTRMKLKDDSCMETVNGIQRHKFLYISLPTSQSSIQDDELTPGRFRTIVSGLLPNEIR
FT                   NKKLMSPVMGVIGFLNLTEVWMDLIDRIMTDQCDYMTQDKSNPTASTNRAYFKERQSTI
FT                   DSLNLPDLKQLRTDAERKHYLPDDIETECVPWIFANAPDRCPPTVLLVAGIPELGAFFA
FT                   LMQDIRSGILASNLRGTAEEKIARKSSFYQSYVRRTQSMGLNCDQKIIHIYMDYLGTFC
FT                   VDHFNLGDDMDPDLKIKAQALLDKKVKEISTQEPIKL"
XX
SQ   Sequence 1574 BP; 506 A; 311 C; 327 G; 430 T; 0 other;

ef641805 Length: 1574  03-JUN-2009  Type: N  Check: 1934  ..

       1  tagtagtaga ctccctgaat acaacagaag agactactac tatatataga
      51  gcttaacagg tcccaaaatg gcgcaaagcc gtatcaccaa agaggacatc
     101  caaaagcttg aggatgcaaa aaagcagatt gaaattcagc tttcttcctc
     151  aatccaaaaa ttagccacag aaactgaaca gtttgggcca gacccagacc
     201  caatacagct tcaagctgta agacaaagat ctagtgtgat agagggttat
     251  aaagaaaagc taagagatct ggagagccag ctaagtattg cctatgcaac
     301  ctttgctgat gaggaggaag aaagaaagaa gaggaaggaa gtaccaggtg
     351  ttgaagaagg tgattatttg tcccaaaagt cttcacttag gtacgggaat
     401  gtgattgact tgaaccccct taatctagag gaaccagctg ggcagactgc
     451  caattggaat cgcatctttg agtatattac tacaattact caggtacttt
     501  tacttaaggg tctttacatc ctgacaaccc ggggaagaca gacaagcaag
     551  gataataaag gaacaagaat gaagctgaaa gatgattctt gcatggagac
     601  tgtgaatggg attcagaggc acaagtttct gtacatctca ctcccaacca
     651  gtcagtcatc catccaggac gatgaattga caccaggcag attcaggaca
     701  attgtctcag gactcctccc taatgagatt cgtaataaaa agttaatgag
     751  ccctgtcatg ggtgtgattg gtttcttgaa ccttactgaa gtctggatgg
     801  atcttattga tcggatcatg actgaccaat gtgattacat gactcaagat
     851  aaatcaaatc caactgcaag tacaaatagg gcttacttta aagaaagaca
     901  aagcactatt gacagtctaa atcttcctga tctcaaacaa ctgaggactg
     951  atgcagaaag aaagcactat cttcctgatg acattgaaac tgagtgtgta
    1001  ccctggattt ttgcgaatgc acctgatagg tgtcccccaa cagtgttact
    1051  tgttgcaggg atacctgagc ttggtgcatt ctttgcatta atgcaggata
    1101  taaggagtgg aatccttgca tcgaatttga gaggaacagc tgaagaaaag
    1151  attgctcgaa agtcctcatt ttaccaatca tatgttagga ggacacaatc
    1201  aatgggtcta aactgtgacc aaaagataat tcatatttat atggattatc
    1251  ttgggacatt ctgtgttgat cactttaacc tgggagatga catggaccct
    1301  gatcttaaga ttaaggccca ggccctctta gataaaaaag tgaaagaaat
    1351  ctcaacacag gagcctataa aactataagc tcttaattct tcttgtttat
    1401  gtaaatagtt gcttgcttgc tcttaatcaa tcattattct gcttactaac
    1451  ctgcttgctt gcttgcttgc ttgcttacta acatgctttg cttgctacta
    1501  acctgctttg ctttcccctg ctattaaccc tcaaaagtta tctctctatt
    1551  tgttgtatag ggagcatact acta