Sequence of DPV Imjin virus
Imjin virus strain Cl 04-55 RNA-dependent RNA polymerase mRNA, complete cds.
ACC No: EF641807
Dated: 2009-06-03 | Length: 6570 | CRC: 1298463500
ID EF641807; SV 1; linear; mRNA; STD; VRL; 6570 BP.
XX
AC EF641807;
XX
DT 24-OCT-2008 (Rel. 97, Created)
DT 03-JUN-2009 (Rel. 101, Last updated, Version 2)
XX
DE Imjin virus strain Cl 04-55 RNA-dependent RNA polymerase mRNA, complete
DE cds.
XX
KW .
XX
OS Imjin virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC unclassified Hantavirus.
XX
RN [1]
RP 1-6570
RX DOI; 10.1073/pnas.0808942105.
RX PUBMED; 18854415.
RA Arai S., Ohdachi S.D., Asakawa M., Kang H.J., Mocz G., Arikawa J.,
RA Okabe N., Yanagihara R.;
RT "Molecular phylogeny of a newfound hantavirus in the Japanese shrew mole
RT (Urotrichus talpoides)";
RL Proc. Natl. Acad. Sci. U.S.A. 105(42):16296-16301(2008).
XX
RN [2]
RP 1-6570
RX DOI; 10.1128/JVI.00371-09.
RX PUBMED; 19357167.
RA Song J.W., Kang H.J., Gu S.H., Moon S.S., Bennett S.N., Song K.J.,
RA Baek L.J., Kim H.C., O'Guinn M.L., Chong S.T., Klein T.A., Yanagihara R.;
RT "Characterization of Imjin virus, a newly isolated hantavirus from the
RT Ussuri white-toothed shrew (Crocidura lasiura)";
RL J. Virol. 83(12):6184-6191(2009).
XX
RN [3]
RP 1-6570
RA Song J.-W.;
RT ;
RL Submitted (01-JUN-2007) to the EMBL/GenBank/DDBJ databases.
RL Department of Microbiology, College of Medicine, Korea University, 126-1,
RL Anam-dong, 5-Ga, Sungbuk-Gu, Seoul 136-705, Korea
XX
FH Key Location/Qualifiers
FH
FT source 1. .6570
FT /organism="Imjin virus"
FT /segment="L"
FT /host="Crocidura lasiura"
FT /lab_host="Vero E6 cells"
FT /strain="Cl 04-55"
FT /mol_type="mRNA"
FT /country="South Korea"
FT /isolation_source="lung tissue"
FT /db_xref="taxon:467989"
FT CDS 45. .6494
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /db_xref="GOA:B6RD48"
FT /db_xref="InterPro:IPR007099"
FT /db_xref="UniProtKB/TrEMBL:B6RD48"
FT /protein_id="ABV21394.1"
FT /translation="MQKYYEIRDKVHGIEPGTIGAVECINLLDSLYMVRHDLIDEMIKH
FT DWSDNKDKETPIADVLLKAGIPAEIINGMEKVRIVDHPAGKTLKQFFKTTPDNYKISNN
FT VIHFIEVTVTVDVEKGIYEKNQKYQGGLNQIQQELDKAWHQGKLQHKFELKFDIVAVKA
FT DGSNLSTQWPSTRSQGVVQHMRMVQAEIQYVRDKLLSTQERGTFESMFNLKFHTHTERE
FT FKYTLPSYEDVEDCDANLDELLDHTKEWLTKKQSFSFHEVTGEKVTKSFELYEKDQQTM
FT YPKSKKPRNFLLLPVGIQSEYKPMTIYMSQVDTKLVANIILSELPETPLQSLVKDICYS
FT YMMLDNVEINNYYSPVHIFEKTKNIPQPGCLKINIGLFDEGAKAILSQTKQEANGVQQI
FT ESLHPWNHSESITSMSIIEHILSQLEINIGVDPDDMTTYRKRSPVDSLLGRLMQSETEK
FT YLIKVLRKTVGWHIGHLIRDITEALVAHAGLKRPKYHSISGFHHGNVLLVMLPSKSLEV
FT ASAHVRYIIVHKEGYGFVDPDNIDSKKIINGTCWIYSKAMTIDLNRLLALNISFEKAFL
FT ATAVWFQYFTEDQSIFPLQSTVKSVFSYHLLLAVTQKMKVCALFDNLRYLIPSCTASYS
FT GADSLIEKFCKRPFKSSIEVYVYNKAKELLISLAQNNKFRYYSKVRLLGLTVDQSSVGA
FT TGIYPSLICHTVYRHYKSLISEITTCFFLFEKGLHGTMTEEAKIHLETVEWAQKFKQKE
FT SDYGKDIVENGYSLSMVIKNEIKPEQQLYCKDVVKLATIELNKVLSSKGQVIANSIMSK
FT YWETPYFSQTRNISLKGMSGEIQEDGHLASSYTLIEAIRYLNTHKRNPTVLELYAETKD
FT IRAQARIVRKHQRTEADRGFFITTLPTRVRLEIIEDYYDSISKNVQEEYISYGGEKKIL
FT QIQGSLEKALRWASGTSVITLSTGDQITFKRKLMYVSADATKWSPGDNSAKFRLFSSHI
FT HDGLKDKRLKRCVIDALRGIYETEFFLSRRLRGYIDNMNYLEMNVKEFLSFFDHVEERS
FT GLVRGNWLQGNLNKCPSLFSVAISFLFKEVWAQLFPELDCFIEFAHHSDDALFIYGYLE
FT PEGDASEWFLYVSQKIQAGQLYWCSVNTEMWKTMFNLHEYLLLLGSVKVSPKKTTVSPT
FT NAEFLSTFFEGCAVSIPFSKILLGALSDLPGLGFFDDLAASQSRCVKALDMGASPQIAQ
FT IAVNLTNSKVERLYGTASGMANYPCNFINVNRDKIPICLGGTGSSSILDLATAGIGMSD
FT KMILKNALLGYKHKHNPEDTYILGIFKFLITLSEETFQHESLGEFSFLGKVQWKIFTPK
FT SEFEYASLFGNKFLGDWSIDHPVYDYIIPQLRDDLLVYLVRKLNDPSIVTAMTLQSPLQ
FT LRFRMQAKQHMPVCKYKGSWVTFRTILNAAHEFAVEYKPTENDLDLFNTLISCTFSKEF
FT AWKDFIGNTECEVIQSRKIHRPKVARVFTVKERDQIIQNPISVVIAYKFAQTTSEIKDV
FT LDKAKFPDSLSSDLKTLHEGVYRELGLNINDPLVMKRIAPMLYKTGRSRIVIVNGNVEG
FT TAEAICTYWLRSISFVKQIKIIPHCEVLKAVSIFSKSDFVRDDTQLAALRLCIDIWRWG
FT KYNYVNLQEWFSALWFESKTLWDWLYHFQRKGVPVVDPEVQCAGLMMYDMLRDSTTLQL
FT HANRRAYSGKQYDAYCTQVYNEESGLYEGDLRVVFNFGVDCARLEIFWDKQTYILETSI
FT TSKPVLRVLMQEVTTELQKCGMKFNTIQSTGYRSVVLFKTDSGFEWGKPNVPCVIFLNC
FT ALRPNLRNRQVLNKDFMITILDNGFKAIAQQDEESNRFQLAHAYHNLKDVRYQAIETMN
FT NVYFTHEGKNLYINPIIAAGLLENFMKGLPAVIPPQAYSLIMKKAKITVDLFMFNKLLS
FT LINPRNVFNMDGIDNDYPEFSTVTSLSTKDWAEEKELEDAEVDDDEYVVDLNDIDFDKV
FT DTLADIQHFLQDESAYTSDLIIDTEPTEAKRIRGIVKLVEPVKLIKSWVSKGLAIEKVY
FT NPLAIILVTRYFSKQYSFSKVPLAQLDPYNLTELESIVRGWGELVCDRFEELDQQAHEY
FT ILKTKEPPQNLVPDSLFSFRHAELLFSRLFLPDTVSAFY"
XX
SQ Sequence 6570 BP; 2270 A; 992 C; 1288 G; 2020 T; 0 other;
ef641807 Length: 6570 03-JUN-2009 Type: N Check: 7068 ..
1 tagtagtata ctccggaaat tgacaataac agaaagagta tactatgcag
51 aaatattatg agatcaggga caaggtccat ggcatagagc caggcacaat
101 aggagcagta gaatgtatta atttgctaga ttcactttac atggtccgcc
151 atgatctaat tgatgagatg ataaaacatg actggtctga taataaagat
201 aaagagacac ctattgcaga tgtactattg aaagctggca tccctgctga
251 aataataaat ggtatggaga aggtaaggat tgttgatcac cctgcaggaa
301 aaacacttaa gcaattcttt aaaacaaccc ctgacaatta caagatttcc
351 aataatgtga ttcatttcat tgaagttact gttacagttg atgtcgaaaa
401 gggaatttat gagaaaaatc aaaagtacca aggtggattg aatcaaatac
451 aacaggagtt agataaagcc tggcaccaag gtaagttaca acacaaattt
501 gagttaaaat ttgacattgt tgctgtaaag gctgatggtt ctaatctatc
551 aacacaatgg cccagtacaa ggtcacaagg ggttgtccaa catatgagaa
601 tggttcaggc tgaaattcag tatgtaagag ataagttatt aagcacccaa
651 gagcgtggta cttttgaatc aatgtttaac ttaaagttcc acacccacac
701 tgaaagagaa tttaaatata ctctcccatc atatgaggat gttgaggact
751 gtgatgctaa tcttgatgaa ttattagacc acacaaaaga atggttaaca
801 aaaaaacagt cattttcgtt ccatgaagtt actggagaaa aggtcacaaa
851 atcatttgag ttatatgaga aagatcaaca aactatgtat ccaaagtcaa
901 agaaacctag gaacttccta ttactaccag tcgggataca gtcagaatat
951 aaacctatga caatatatat gtcacaagtc gatactaagt tggtagctaa
1001 cattatttta agtgaattac ctgaaacacc attacaatct ctggtaaaag
1051 acatatgtta tagctatatg atgttagata atgtagagat aaataattat
1101 tatagtccag ttcatatctt tgaaaaaacc aaaaatatac cacaacctgg
1151 ttgtttaaag ataaatattg gattatttga tgaaggggct aaagccatat
1201 tgagtcaaac taagcaagag gcaaatggtg tccagcaaat agaaagttta
1251 catccatgga accattctga gtcaattaca tctatgagta taatcgaaca
1301 tattttgtca caactagaga ttaacatagg agtggaccct gatgacatga
1351 ctacatacag gaaaaggtca cctgtggatt cactattagg tcgcctcatg
1401 cagagtgaaa cagaaaaata tctaataaaa gtattacgga aaactgtagg
1451 ttggcacata ggacatttaa ttagagatat aactgaggca ttggttgcac
1501 atgctggttt aaagagacca aaatatcatt ctatatcagg atttcaccat
1551 gggaatgttc tacttgtaat gcttccatct aagtccttag aagtggcctc
1601 tgctcatgta agatatataa ttgtacataa agaaggatat gggtttgttg
1651 atcccgataa cattgattct aaaaaaataa taaatggcac atgttggatt
1701 tactcaaaag caatgaccat tgatttgaat cgccttttag cacttaatat
1751 aagctttgaa aaggcattcc ttgcgactgc tgtgtggttt caatatttca
1801 ctgaagatca aagtattttt ccattacagt caactgttaa gtcagtcttc
1851 tcctatcatt tattgttagc tgttacacaa aaaatgaaag tatgtgcgtt
1901 atttgacaac cttagatacc ttatcccatc atgtactgcc agttactctg
1951 gtgcagatag tttgattgag aaattttgta aaaggccatt taaaagttct
2001 atagaagttt atgtgtataa taaagcaaaa gaacttctaa taagtttggc
2051 acaaaataat aaatttcgat actactcaaa agttaggctc ttaggtttga
2101 ctgtggatca atcaagcgta ggggcaaccg gaatataccc atctttgatc
2151 tgtcacacag tttacagaca ttataaatca ttaatatctg aaatcacaac
2201 atgctttttc ttatttgaga agggcttaca tggaacaatg acagaagaag
2251 caaaaattca tctagaaaca gttgaatggg cacagaaatt taagcaaaaa
2301 gagtctgatt atgggaaaga tattgttgaa aatggttaca gtctatctat
2351 ggttataaag aatgaaataa aacctgaaca acaattgtac tgcaaggatg
2401 tggttaagtt ggctactatt gaattaaata aagtattgtc atctaagggt
2451 caggttatag caaattcaat aatgtcaaag tattgggaaa caccttattt
2501 cagtcagact cgaaacatta gtttaaaagg aatgtctggg gagatacagg
2551 aggatggtca tctagcatct agttatacac tgattgaagc aattagatat
2601 ttaaatacac ataagcgaaa tcctactgtc ttagaactat atgctgagac
2651 caaggacata agggcacaag caagaattgt gagaaaacat caacgaactg
2701 aagctgatag gggtttcttt attaccacac taccaacacg agtacgcctt
2751 gagattattg aggattatta tgattctata tcaaagaatg ttcaggaaga
2801 atacatctct tatgggggtg aaaagaagat tttgcaaatt caaggttctc
2851 tggagaaggc attaagatgg gcatctggta caagtgttat aactctttct
2901 actggggatc agataacatt caagaggaaa ttaatgtatg taagtgcaga
2951 tgcaacaaaa tggtcacctg gggacaattc tgcaaaattt agattatttt
3001 catcacatat tcatgatggg ctaaaggata aaaggttaaa aagatgtgta
3051 atagatgcat taagaggtat ttatgaaaca gagttctttt tatctaggag
3101 gcttagaggt tatatcgata acatgaacta tttagaaatg aatgtgaaag
3151 aatttttatc cttctttgat catgtagagg aacgttctgg gttggtcagg
3201 ggaaactggc tacaaggtaa tcttaataaa tgtccatcat tgttttcagt
3251 tgctattagt tttcttttca aagaggtctg ggctcagtta ttccctgaat
3301 tagattgctt tatagagttt gcacatcact ctgatgatgc attatttatt
3351 tatggctatt tagaaccaga aggtgatgct tctgaatggt ttctatatgt
3401 tagtcaaaaa atacaggcag gtcaattgta ttggtgttct gttaacacag
3451 aaatgtggaa gaccatgttt aacttgcatg aatatctctt attattagga
3501 tctgtaaaag tttcaccaaa aaagacaaca gtttcaccaa caaatgccga
3551 atttttatca acattctttg aaggttgtgc tgtatcaatc ccattctcca
3601 aaattttatt aggagctcta tctgatctgc cagggttagg cttttttgat
3651 gacttagcag cttcacaatc aaggtgtgtc aaagcccttg atatgggtgc
3701 atcacctcaa atagcacaaa ttgcagtaaa cttgactaat tcaaaggtcg
3751 aaagactgta cggaacagca tctggaatgg ccaattaccc atgtaatttt
3801 attaatgtca atcgtgataa aataccaatt tgtctaggtg gaaccgggtc
3851 atcatctatt ctagacctgg ctacggccgg aatcgggatg tctgataaga
3901 tgattttaaa gaatgctctt ttaggataca agcataaaca taatccagag
3951 gatacttata tccttggaat ttttaaattt ttaattacac taagtgagga
4001 aacatttcaa catgagagtc tgggagaatt ttctttttta ggtaaagttc
4051 agtggaagat atttacacca aagtccgaat ttgagtatgc atctttattt
4101 ggaaataagt ttttaggtga ttggagtatt gaccaccctg tttatgatta
4151 tattataccc cagttaaggg atgatctact tgtctaccta gtcagaaaac
4201 taaatgatcc gagtattgtg acagccatga cattacaatc acctttacag
4251 ttgaggttta ggatgcaagc aaaacaacat atgcctgtat gcaagtataa
4301 aggttcatgg gtaacattta gaacaatttt aaatgcagca catgaatttg
4351 ctgtagaata taaaccaact gagaatgatc ttgatttatt caatacatta
4401 atatcttgca cattttcaaa ggaattcgca tggaaagact ttataggtaa
4451 cactgaatgt gaagtcattc aatcaagaaa aatccataga cccaaagtgg
4501 cacgagtttt tactgtgaaa gaacgtgacc agattattca gaacccaatc
4551 tctgttgtaa tagcatataa atttgcacaa acaaccagtg agattaaaga
4601 tgtgcttgat aaagcaaagt tccctgattc attaagtagt gatttgaaaa
4651 cattacatga aggtgtttac agagaattag gcttgaatat aaatgatcca
4701 cttgtaatga aacgtattgc accaatgtta tataagacag gtaggtcaag
4751 aatagttatt gtaaatggga atgttgaagg gacagcagag gctatatgta
4801 cttactggtt aaggtcaata tcattcgtga aacaaataaa aataataccg
4851 cattgtgagg tattaaaggc tgtgtcaatt ttcagtaaaa gtgattttgt
4901 gcgagatgat acacagcttg cagccttaag attgtgtatt gatatttgga
4951 gatggggtaa atataattat gttaaccttc aagagtggtt ttcagcattg
5001 tggtttgagt caaaaaccct atgggactgg ttgtatcatt ttcagcggaa
5051 aggtgtccct gtagttgatc ctgaagtaca atgtgcaggt ttaatgatgt
5101 atgacatgtt aagagatagc actacattgc aattacatgc taataggcgt
5151 gcatattcag ggaagcagta tgatgcatat tgcactcaag tttataacga
5201 agaaagtggt ttatatgaag gtgatttacg tgttgttttt aattttggtg
5251 tggactgtgc aagattagag attttttggg ataaacagac ctatattctg
5301 gaaacatcaa tcacaagtaa accagttctt cgtgttttaa tgcaagaagt
5351 aactactgag ttacaaaaat gtggtatgaa gtttaataca atccagagta
5401 ctggttacag gtctgttgtc ctttttaaga ctgattcagg ttttgaatgg
5451 gggaagccta atgtaccttg tgttatattt ttaaattgtg ccttacgacc
5501 taatctaaga aatagacagg tcttaaataa agatttcatg attaccatac
5551 tggataatgg atttaaggct atagcacagc aagatgaaga aagtaacaga
5601 tttcaacttg cccatgctta tcacaacctt aaggatgtga gatatcaagc
5651 aatagagaca atgaataatg tatactttac acatgaaggg aaaaatctgt
5701 atattaatcc aattattgca gcaggtttgc tagagaattt tatgaaaggt
5751 ctaccagctg taataccacc tcaggcttat agtctcatta tgaagaaggc
5801 taaaatcact gttgacctct ttatgtttaa taagttattg tcattgatta
5851 atccaaggaa tgtatttaat atggatggta ttgacaatga ttatcctgaa
5901 tttagtacag tcactagctt atcaacaaaa gattgggctg aggaaaaaga
5951 gcttgaagat gcagaagttg atgatgatga gtatgtagtt gatttaaatg
6001 atattgactt tgataaagtt gatacattgg ctgatataca acacttctta
6051 caagatgaat cagcatatac atcagattta ataattgata cagagccaac
6101 agaagccaaa cgaataaggg gaattgttaa gctagttgag cctgtaaaat
6151 taataaaaag ttgggtatct aaaggtttag ctatagaaaa agtttataac
6201 ccattagcta ttatattagt aacacggtat ttttccaaac agtattcatt
6251 cagcaaggta ccattagctc aactggatcc ttataacctt acagagcttg
6301 agagtattgt cagaggttgg ggagagttag tttgtgatag gtttgaggaa
6351 ctcgatcagc aggcacatga gtatatactg aaaacaaaag aacccccgca
6401 gaaccttgtt cctgattcat tgttttcttt taggcatgca gagctcctat
6451 tttctagact attcttacct gacactgttt cagcttttta ttgacagcat
6501 tttgaaactc tgtcaagcca tgtattcttg taaattatat ctttgttgtt
6551 tattccggag catactacta