Sequence of DPV Prospect Hill virus
Prospect Hill virus segment L, complete sequence.
ACC No: EF646763
Dated: 2007-12-12 | Length: 6559 | CRC: -473250363
ID EF646763; SV 1; linear; viral cRNA; STD; VRL; 6559 BP.
XX
AC EF646763;
XX
DT 12-DEC-2007 (Rel. 94, Created)
DT 12-DEC-2007 (Rel. 94, Last updated, Version 1)
XX
DE Prospect Hill virus segment L, complete sequence.
XX
KW .
XX
OS Prospect Hill virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus.
XX
RN [1]
RP 1-6559
RX PUBMED; 17967200.
RA Song J.W., Gu S.H., Bennett S.N., Arai S., Puorger M., Hilbe M.,
RA Yanagihara R.;
RT "Seewis virus, a genetically distinct hantavirus in the Eurasian common
RT shrew (Sorex araneus)";
RL (er) Virol. J. 4 (1), 114 (2007)
XX
RN [2]
RP 1-6559
RA Arai S., Nerurkar V.R., Bennett S.N., Song J.-W., Yanagihara R.;
RT ;
RL Submitted (04-JUN-2007) to the EMBL/GenBank/DDBJ databases.
RL John A. Burns School of Medicine, University of Hawai'i, 651 Ilalo St,
RL Honolulu, HI 96813, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .6559
FT /organism="Prospect Hill virus"
FT /segment="L"
FT /specific_host="Microtus pennsylvanicus"
FT /strain="PH-1"
FT /mol_type="viral cRNA"
FT /country="USA"
FT /db_xref="taxon:11603"
FT CDS 37. .6504
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /note="large protein"
FT /protein_id="ABV02943.1"
FT /translation="MEKYTEIHRRVKDAVPGEVSAVECLDLLDRLYAVRHDVVDQMIKH
FT DWSDNKDTERPIGHVLLMAGVPNDVIQSMEKKVIPGSPSGQILRSFFRMTPDNYKITGN
FT LIEFVEVTVTADVARGVREKVAKYQAGLTYVEELLRQEYERGNLGGSYQIKFDVVAVRT
FT DGSNISTQWPSRRNDGVIQTMRLIQADINFVREHLIKAEERGALEAMFNLKFHVGGPKA
FT RTFDVPDYRPQALCNPNIDGLLDHCKKWLTHEHAFAFEEVQGGKVFNAFQQEESVHKER
FT YNPSRKPRNFLLMQGTIQGPYMPSTIASDQYDSRVGCLELLRNYPETPVQKLVGDMAYK
FT YISLDKDDILNYYNPRAYFKPTSNVKEPGTFKLNLSAMDPKSRALLDIISKDSKKGIFG
FT EKIDSIEIDSQIQLNDCAKVIEKILSDLEINVGESHVQIDEPKKTTGVDDILKKFYDNE
FT IVRYLLTIIRKTTAWHLGHLFRDITESLIAHAGLKRSKYWSVHGYNHGNILLFILPSKS
FT LEVAGSYIRFVTVFKDGIGLIDRDNLDSTVLIDNTAWCFSKVMSLDLNRLLALNISFEK
FT ALLATATWFQYYTEDQGHFPLQHALRSVFAFHFLLCMSQKMKLCAIFDNLRYLIPAVTS
FT LYSGFRPLISKFFERPFKSALEVYIYSIVKTLLVSLAQNNKIRFYSKVRLLGLTIDQST
FT VGASGVYPSLMSRVVYKHYRSLISEATTCFFLFEKGLHGNLTEEAKIHLETVEWARKFK
FT SKEVKYGEYIMEEGYTIQDVLDHNVEVEQQLFCQEAVELAAFELNQYLQAKSQVMAANI
FT MNKYWDRPYFSQTRNISLKGMSGSLQEDNHLSASVTLIEAIRYLNQSQHNPTILEMYEQ
FT TKQQPAKARIVRKYQRTEADRGFFITTLPTRVRLEIIEDYFDAIAKVVPEEYISYGGER
FT KILNIQQALEKALRWASGESEIQASVGHVIKLKRKLMYVSADATKWSPGDNSAKFRRFT
FT QALYDGLRDDKLKNCVVDALRNIYQTEFFMSRKLHRYIDDMDDLSEFVDDFLSFFPNKV
FT SAMIKGNWLQGNLNKCSSLFGVAMSLLFKRVWSMLYPELDCFFEFAHHSDDALFIYGYL
FT EPFDDGSDWFKFVSQQIQSGHLHWYAVNTEMWKSMFNLHEYILLMGSIKISPKKTTVSP
FT TNAEFLSTFFEGCAVSIPFVKILLGSLSDLPGLGYFDDLAAAQSRCVKALDMGACPQLA
FT QLAIVLCTSKVERLYGTAKGMVNNPTAFLKVDRSQVPIPLGGDGSMSIMELATAGIGMA
FT DKNILKNSYISYRHTRKDTDRYILGLFKFLMSLSEDVFQHDRLGEFSFVGKVQWKAFTP
FT KAEFEFYDQYSNRYIQLWTEQHPVYDYIIPRGRDNLLVYLVRKLNDPSIITAMTMQSPL
FT QLRFRMQAKQHMKVCRLNSEWVTFREVLAAADSFASQYRPTRTDLELFQTLVNCTFSKE
FT YAWRDFLNEVKCDVINVRQVHRPKVARTFTVKERDQSIQNPIMAVIGYKYANSVDEISD
FT VLDSAIHPDSLSTDLQLMKEGVYRELGLDISDPLVLKRVAPLLYKSGKSRVVIVQGNVE
FT GTAESICSYWLKSMTLIKTIKVRPKKEVLKAVSLYGHKDKIGNLTYIAAMRLCIEVWRW
FT AKVNEQSPEGWLRALYFESKTLLDWVHDFTSKGIIPVDPEIQCLGLLLNDLFGNKSLLQ
FT MHANRRAYSGKQYDAYCVQTYNEETKLYEGDLRVTFNFGMDCARLEIFWDKKEYILETS
FT ITQRNVLKLMMEEVTKELLRCGMRFKTEQVNSSRSLVLFKTESGFEWGKPNVPCIVFKH
FT CALRTGLRTKATVKKPFNITIQANGFRAMAQLDEDNPRFLLAHAYHNLRDVRYQALQAV
FT GNLWYKTAQHKLFINPIVSAGLLECFMKGLPAAIPPAAYSLIMNKAKISVDLFMFNELL
FT ALINPQNVLNLDGIEETSEGYSTVTTISSTSWSEEVSLTMDDSDDDEPEQPNYTIDLDD
FT IDFETINLEEDIEHFLQDESAYTGDLLIQAEDTEVKRLRGITRVLEPIKLIKSWVSKGL
FT AIDKVYNPIGIVLMARYMSKHFDFNKIPLALLNPYDLTEFESVVKGWGETVNDNFIEYD
FT REAQKKVQEEKVLPEDVLPDSLFSFRHVDILLKRLFPRDATASFY"
XX
SQ Sequence 6559 BP; 2118 A; 1102 C; 1455 G; 1884 T; 0 other;
ef646763 Length: 6559 12-DEC-2007 Type: N Check: 4412 ..
1 tagtagtaga ctccgagata gagaagtcta ctaaaaatgg agaaatacac
51 agaaatccac aggagggtga aagatgctgt tccaggagag gtatcagcag
101 tagagtgcct tgatctgttg gataggctct atgctgtgag acatgatgtg
151 gtcgatcaaa tgataaaaca cgactggtca gacaataagg acactgaaag
201 gccaattggt catgtgctgt taatggcagg agtgcccaat gatgtaatcc
251 agtctatgga gaagaaagtt atcccgggga gtccaagtgg tcagatcctg
301 aggtcatttt tccggatgac acctgacaac tataaaatta caggtaattt
351 gattgagttt gtggaagtga cagtgacggc agatgtggct agaggagttc
401 gagaaaaggt agcaaagtat caagctggcc taacatatgt tgaagaactg
451 ttgaggcaag aatatgagag aggaaaccta ggcggaagtt atcaaataaa
501 attcgatgtt gtagcagttc gtacagacgg gtcaaacata tcgacacagt
551 ggccaagtag gagaaatgat ggagtaatac agacaatgag actcattcag
601 gctgatatta attttgtgag agaacatctg ataaaggcag aggaaagagg
651 tgccctagaa gcaatgttta acctgaaatt tcatgtaggt ggacctaagg
701 caaggacctt tgatgtgcca gactatcggc cacaagcatt atgcaatcca
751 aacattgacg ggttgttaga tcactgtaag aagtggctta cacatgagca
801 tgcatttgca tttgaggagg tgcaaggggg taaagtattt aatgcatttc
851 aacaggaaga atcagttcat aaagaaaggt ataacccatc aagaaagcct
901 aggaattttt tattgatgca aggaacgatt caaggcccat atatgccaag
951 tactatagca tctgatcaat atgattctcg agttggttgt ctggaactgt
1001 tgaggaacta cccagaaaca ccagtccaaa agttggtagg tgatatggcc
1051 tataaataca tatcattgga caaagatgac atcttaaatt attacaatcc
1101 tagggcatac tttaagccaa catctaatgt taaagaaccg ggaacattca
1151 agctaaattt gtcagcaatg gatcctaagt cccgagcact tctggacatt
1201 atatctaaag attcaaagaa aggtatattt ggagagaaaa ttgatagtat
1251 agagatagac agtcaaatcc agttgaatga ttgtgcaaag gtgatcgaaa
1301 agattctatc tgatttagag attaatgtcg gagagtcaca tgtacagatt
1351 gacgaaccca aaaagacaac aggtgttgat gatatattaa agaaattcta
1401 cgacaatgag atagtcagat atttactgac aataattaga aagaccactg
1451 cttggcatct aggacatctt ttccgagata tcacagaaag tcttatagca
1501 catgcagggt tgaaaaggtc taaatattgg tctgtccatg gttacaacca
1551 cggaaatata ttattattta ttctcccatc aaaatcattg gaagttgctg
1601 gctcatatat taggtttgtg acagtattta aagatgggat cggacttata
1651 gatagggata atttagattc aacagtacta atagacaaca cagcctggtg
1701 tttcagtaaa gttatgagcc ttgacttgaa ccgtctgctg gcgttgaata
1751 tttcctttga aaaggcttta cttgcaacag caacttggtt tcaatattat
1801 acagaagacc aaggtcattt cccgcttcaa catgcattac gatcagtgtt
1851 cgcatttcat tttttattgt gtatgtccca aaaaatgaaa ttgtgtgcta
1901 tcttcgacaa cctgaggtat ctgatcccag ctgtgacatc actttattca
1951 ggattccggc cattgatttc taagtttttt gaacggccat ttaaaagtgc
2001 attagaggtt tacatttact ccattgtcaa aaccttgctg gttagccttg
2051 cacagaataa taaaataagg ttttattcta aagttcgact ccttggtctt
2101 actatagatc agtctacagt tggtgcaagt ggcgtctatc catcattgat
2151 gtctcgggtt gtttataagc attatcgtag tttgatctct gaggcaacta
2201 catgcttttt cttgttcgag aaaggacttc atggaaatct aactgaggaa
2251 gctaagatac atctggagac agttgagtgg gcaagaaagt tcaagtctaa
2301 ggaagtaaaa tatggggagt atattatgga agaaggttat accattcagg
2351 atgtcctaga ccataatgtt gaggtagaac agcagttatt ctgtcaagaa
2401 gcagttgagc tggcagcttt tgagttaaat caatacttac aggcaaagtc
2451 ccaagttatg gcagctaata taatgaacaa gtattgggat aggccatatt
2501 tcagtcagac ccgcaatatc agcttgaaag ggatgtctgg ttcattgcaa
2551 gaggacaacc acctatctgc gagtgtaacc ttaattgagg ctatacggta
2601 cctaaaccag agtcagcata accctacaat attagagatg tatgaacaga
2651 caaaacagca gcctgcaaaa gctcgtattg taagaaagta tcaacgtaca
2701 gaagcagata gaggtttttt tataacgacc ttgccaacac gtgtacggtt
2751 agaaataata gaagactact ttgatgctat agctaaagtt gtaccagaag
2801 agtacatttc ttatggtggt gagagaaaga ttcttaatat ccagcaagca
2851 ctagaaaagg cattaaggtg ggcatcagga gaaagtgaaa tacaagcaag
2901 cgttgggcat gttataaagc ttaagaggaa gttaatgtat gtaagtgcag
2951 atgccacaaa atggtcacca ggggacaact cagccaaatt cagaaggttc
3001 actcaggctt tgtatgatgg gctacgagat gacaagttga aaaactgtgt
3051 cgttgatgcc ttacggaata tctaccagac tgagtttttt atgtccagaa
3101 aattgcatag gtacattgat gatatggatg atctgtctga atttgtagat
3151 gactttttat cttttttccc taataaggta tctgcaatga taaagggaaa
3201 ttggctccaa ggaaatttaa ataaatgctc ttcgctattt ggtgtggcca
3251 tgtcattatt atttaaaagg gtttggagca tgctgtatcc tgagttagac
3301 tgtttctttg aatttgcaca tcattcggac gatgcactgt ttatatatgg
3351 ttatttagag ccatttgatg atgggagtga ctggttcaag tttgtttctc
3401 agcagataca atcaggtcat ttacactggt atgctgtaaa tacagaaatg
3451 tggaagagta tgtttaacct tcatgagtac atcttgctta tgggttctat
3501 taagatatcc ccaaagaaga caacagtttc tccaactaat gcagagttct
3551 tgtcaacatt ttttgagggt tgtgctgtct caattccctt tgtaaagatt
3601 ctattaggtt ctctttcaga cttacctggt ttaggttatt ttgatgatct
3651 agcagcagca caaagtaggt gtgttaaagc attagacatg ggtgcatgtc
3701 cacagcttgc tcaacttgca attgttctct gtacaagtaa ggtcgaaagg
3751 ctatatggga ctgcaaaagg tatggtaaac aaccccacag cctttttgaa
3801 agtagatcgg agtcaagtgc ccattccatt gggaggtgac ggttctatgt
3851 ccatcatgga acttgccaca gctggtatag ggatggctga caaaaatatt
3901 cttaagaatt catatatctc atatcgtcat actagaaagg acacagaccg
3951 gtatatatta ggccttttta aattcttaat gagtttatca gaggatgtat
4001 ttcagcatga caggttaggc gaattcagtt ttgtgggtaa agttcaatgg
4051 aaagcattca caccaaaggc tgaatttgaa ttttacgatc aatattctaa
4101 tagatacatt caactttgga cagaacaaca ccctgtttat gattacatca
4151 taccacgtgg aagagacaat ttattagtgt atttagtccg taaactcaac
4201 gatcccagta tcatcactgc aatgacaatg caatcaccac tacaattacg
4251 attccgaatg caagcaaaac agcatatgaa ggtatgtagg ttgaattcag
4301 aatgggtaac atttagggag gtcttagccg ctgcagactc ctttgcatcg
4351 cagtataggc cgacaaggac tgatttggaa ttatttcaga cactagtaaa
4401 ctgcactttt tcaaaagaat atgcctggcg tgattttttg aatgaggtaa
4451 agtgtgatgt gattaatgta cgacaggttc atcggcctaa agtggcaaga
4501 actttcactg ttaaagaaag ggatcaatcg atccaaaatc caataatggc
4551 agtgataggt tacaaatatg caaattctgt agatgagatt agtgatgtgt
4601 tagacagtgc aatccaccct gattccttat caactgacct tcagcttatg
4651 aaagaaggag tatataggga attaggccta gatatcagtg atcccttagt
4701 attgaaacga gttgcaccac tactgtataa atcaggaaaa tccagagttg
4751 taattgtgca aggcaatgtt gagggaactg ctgaatcaat atgtagttat
4801 tggttgaaat ctatgactct aatcaagact atcaaggtca gaccaaaaaa
4851 ggaagttctt aaggctgtat ccctatatgg ccataaagat aaaatcggca
4901 acttaacata tattgcagca atgagattat gcattgaagt atggcggtgg
4951 gcaaaagtta atgagcaaag tcctgaaggt tggttgaggg ctctatattt
5001 tgagtcaaaa acactgctgg attgggtcca tgattttaca agtaaaggta
5051 ttattccagt agatccagaa atacagtgct tgggtttatt attaaatgat
5101 ttatttggga ataagagtct actccagatg catgcaaata gaagagcata
5151 ttcaggaaag caatatgatg cttattgtgt tcagacctat aatgaagaaa
5201 caaaactgta tgaaggggac ctcagagtaa cattcaattt tgggatggat
5251 tgtgcacgtc ttgaaatctt ttgggacaag aaggaataca tccttgaaac
5301 atctattaca caacgcaatg ttttgaaact gatgatggag gaagtgacaa
5351 aggagttact tcgatgtggg atgcgattta aaacagaaca ggtcaattca
5401 tctcgaagtc ttgttctatt caaaacggaa tctggctttg aatgggggaa
5451 acctaatgtt ccatgcatcg tatttaaaca ttgtgctcta cgtactgggc
5501 ttagaacaaa agcaacagtg aaaaaaccat tcaatataac aattcaggcc
5551 aatggattta gagcaatggc ccagttagat gaagataacc cgaggtttct
5601 attagcacat gcttatcata atcttagaga tgtgaggtat caagccttgc
5651 aagcagtagg gaacttatgg tacaagactg cacagcataa attattcatt
5701 aatccaatag tatcagcagg gcttctagag tgcttcatga aaggactccc
5751 agctgcaata ccacctgcag cgtactcatt gataatgaac aaggccaaga
5801 tttctgttga cctttttatg ttcaatgagc ttttggccct tataaacccg
5851 caaaacgtcc ttaatcttga tgggattgag gagacatctg aaggttatag
5901 tactgttaca acgatctcca gcacaagttg gtcagaggag gtgagtctaa
5951 caatggatga tagtgatgat gatgaaccag agcaaccgaa ctatactata
6001 gacctagatg acattgattt tgaaacaata aacctagagg aagatattga
6051 gcactttctc caagatgagt cagcatacac tggggatttg ctcatacagg
6101 cagaagatac ggaggtcaag cgactccgag gtattacaag ggttttagaa
6151 ccaattaaac tgataaaaag ttgggtttcc aagggtctag ccattgacaa
6201 agtttataac ccgattggga tagttctaat ggcacgatac atgtctaagc
6251 actttgactt taataagatc ccattagcgc tccttaaccc atatgattta
6301 acagagtttg agagtgttgt caaggggtgg ggagaaacag taaatgataa
6351 ttttattgag tacgatagag aagctcagaa aaaggtacaa gaggagaagg
6401 tgctgcctga agatgtgttg ccagactcat tgttttcttt ccgccatgtc
6451 gatattcttc ttaagcgtct tttccctagg gatgcaactg catcatttta
6501 ttaatttctg cattgcctgt cttttcttct atttgctctt ttctcggagc
6551 atactacta