Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate Sucre-Guanaguaro coat protein (CP) gene, partial cds.

ACC No: EF695399

Dated: 2008-03-06 | Length: 858 | CRC: 391447089

                
ID   EF695399; SV 1; linear; genomic RNA; STD; VRL; 858 BP.
XX
AC   EF695399;
XX
DT   23-JUL-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
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DE   Papaya ringspot virus isolate Sucre-Guanaguaro coat protein (CP) gene,
DE   partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-858
RX   DOI; 10.1007/s00705-007-1091-1
RX   PUBMED; 18030545.
RA   Fernandez-Rodriguez T., Rubio L., Carballo O., Marys E.;
RT   "Genetic variation of papaya ringspot virus in Venezuela";
RL   Arch. Virol. 153(2):343-349(2008).
XX
RN   [2]
RP   1-858
RA   Fernandez T., Rubio L., Marys E.;
RT   ;
RL   Submitted (21-JUN-2007) to the EMBL/GenBank/DDBJ databases.
RL   Microbiologia, IVIC, Carretera Panamericana Km 11, Caracas, DC 1210-A,
RL   Venezuela
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FH   Key             Location/Qualifiers
FH
FT   source          1. .858
FT                   /organism="Papaya ringspot virus"
FT                   /specific_host="Carica papaya L."
FT                   /isolate="Sucre-Guanaguaro"
FT                   /mol_type="genomic RNA"
FT                   /country="Venezuela"
FT                   /note="biotype: P"
FT                   /db_xref="taxon:12205"
FT   gene            <1. .858
FT                   /gene="CP"
FT   CDS             <1. .858
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:A7LB55"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:A7LB55"
FT                   /protein_id="ABS19603.1"
FT                   /translation="NEAVDAGLNEKLKEKEKQKEKEKEKQKEKGKDDAIDGNDVSTSTK
FT                   TGERDRDVNVGTSGTFTVPRIKSFTDKMILPRIKGKTVLNLNHLLQYNPQQIDISNTRA
FT                   TQLQFEKWYEGVRDDYGLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGENQVDFP
FT                   IKPLIEHASPSFRQIMTHFSNAAEAYIAMRNATERYMPRYGIKRNLTDISLARYAFDFY
FT                   EVNSKTPDRAREAHMQMKAAALRNTNRRMFGIDGSVSNKEENTERHTVEDVNRDMHSLL
FT                   GMRN"
XX
SQ   Sequence 858 BP; 302 A; 136 C; 206 G; 214 T; 0 other;

ef695399 Length: 858  06-MAR-2008  Type: N  Check: 3049  ..

       1  aatgaagctg tagatgctgg tttgaatgaa aagctcaaag aaaaagaaaa
      51  acaaaaagaa aaagaaaaag aaaaacaaaa agagaaaggg aaagatgatg
     101  ctattgacgg aaatgatgtg tcaactagca caaaaactgg agagagagat
     151  agagatgtca atgttgggac cagtggaact ttcactgtcc cgagaattaa
     201  atcatttact gataagatga ttttaccgag aattaaggga aagactgtcc
     251  ttaatttaaa ccatcttctt cagtataatc cgcaacaaat tgacatttct
     301  aatactcgtg ccactcagtt gcaatttgag aagtggtatg aaggagtgag
     351  ggatgattat ggccttaatg ataatgaaat gcaagtgatg ctaaatggct
     401  taatggtttg gtgtatcgaa aatggtacat ctccagacat atctggtgtc
     451  tgggttatga tggacgggga aaaccaagtt gattttccaa tcaagccttt
     501  aattgaacat gcttcaccgt catttaggca aattatgact cattttagta
     551  acgcggcaga agcatacatt gcgatgagaa atgctactga gaggtacatg
     601  ccgcggtatg gaatcaagag aaatttgact gacattagcc tcgctagata
     651  cgcttttgat ttctatgagg tgaattcgaa aacgcctgat agggctcgcg
     701  aagctcacat gcagatgaag gctgcagcgt tgcgaaacac taatcgcaga
     751  atgtttggta tagatggcag tgttagtaac aaggaagaaa acacggagag
     801  acacacagtg gaagatgtca atagagacat gcactctctc ctgggtatgc
     851  gcaactga