Sequence of DPV Sweet potato virus C

Sweet potato feathery mottle virus isolate C21 polyprotein gene, partial cds.

ACC No: EU021061

Dated: 2008-03-06 | Length: 1789 | CRC: 1340927222

                
ID   EU021061; SV 1; linear; genomic RNA; STD; VRL; 1789 BP.
XX
AC   EU021061;
XX
DT   06-MAR-2008 (Rel. 95, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 1)
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DE   Sweet potato feathery mottle virus isolate C21 polyprotein gene, partial
DE   cds.
XX
KW   .
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OS   Sweet potato feathery mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1789
RX   PUBMED; 18172571.
RA   Untiveros M., Fuentes S., Kreuze J.;
RT   "Molecular variability of sweet potato feathery mottle virus and other
RT   potyviruses infecting sweet potato in Peru";
RL   Arch. Virol. 153(3):473-483(2008).
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RN   [2]
RP   1-1789
RA   Untiveros M., Fuentes S., Kreuze J.;
RT   ;
RL   Submitted (06-JUL-2007) to the EMBL/GenBank/DDBJ databases.
RL   Crop Improvement and Genetic Resources, International Potato Center, La
RL   Molina Av 1895, Lima, Lima Lima12, Peru
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1789
FT                   /organism="Sweet potato feathery mottle virus"
FT                   /specific_host="Ipomoea batatas"
FT                   /strain="C"
FT                   /isolate="C21"
FT                   /mol_type="genomic RNA"
FT                   /country="Peru:Canete"
FT                   /virion
FT                   /db_xref="taxon:12844"
FT   CDS             <1. .1566
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ABV69041.1"
FT                   /translation="STVVDNTLMVVLAVYYTLLKLGVSESDISGRCVFFANGDDLLIAM
FT                   RPDIAHLLDNFSECFAELGLNYDFSSRTTKKEELWFMSHCGIKRDGIYIPKLEPERIVS
FT                   ILEWDRSHEPIHRLEAICAAMVEAWGYDELLHQIRKFYAWVLGQAPYSELARTGKAPYI
FT                   AETALKSLYTGVQPSADDLSEYTRVLNEMYDDSLLQDNELSVYHQSGNPPEFKDAGANP
FT                   PAPKPRGAFTAPEITEVTEPEDPKQAALREARQKQPAVTPESYGRDTGEKSMRSVSPQR
FT                   VKDKDVNVGTTGTFVVPRVKLHTGKMRQPRVNGISVVNLQHLATYEPEQHNIGNTRSTQ
FT                   EQFRAWYEGVKGDYGVDDAGMAILLNGLMVWCIENGTSPNINGVWTMMDGDERVTYPIK
FT                   PLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYEL
FT                   HSTTPARAKEAHMQMKAAALKNAHNRLFGLDGNVSTQEEDTERHTATDVTRNIHNLLGM
FT                   RGVH"
FT   mat_peptide     1. .624
FT                   /product="nuclear inclusion body protein"
FT                   /note="RNA_dep_RNAP; RNA-dependent RNA polymerase; RdRp"
FT   mat_peptide     625. .1563
FT                   /product="coat protein"
FT   3'UTR           1567. .1789
XX
SQ   Sequence 1789 BP; 529 A; 355 C; 435 G; 470 T; 0 other;

eu021061 Length: 1789  06-MAR-2008  Type: N  Check: 2992  ..

       1  tcaaccgtcg tggacaatac actaatggtt gtgttagccg tctactacac
      51  gttgttgaag ttgggtgttt cagaatctga tattagtggg cggtgtgtat
     101  tctttgcaaa tggggatgat ctactgatag ctatgagacc agacatagct
     151  catcttttgg ataactttag cgagtgcttt gctgagcttg ggcttaacta
     201  tgacttctca tcgaggacaa ctaagaaaga ggaattatgg ttcatgtccc
     251  actgtggaat taaaagagat ggaatataca ttcccaaact cgagcccgaa
     301  cgaatagtat ctattcttga atgggataga tcacatgagc ctatacatag
     351  gctcgaagca atttgcgctg caatggtaga ggcgtggggc tatgacgaac
     401  ttctccacca aattagaaaa ttttacgcat gggttttggg acaagcacca
     451  tacagtgaac tagcacgaac tggaaaagct ccatatattg ctgagactgc
     501  acttaaatca ctgtacactg gagtgcaacc cagcgctgac gatctcagcg
     551  agtacacacg tgtccttaat gagatgtatg atgatagtct ccttcaagac
     601  aatgagctat cggtgtatca tcaatctggt aacccccctg aatttaaaga
     651  cgcaggtgca aacccaccag caccaaaacc aagaggggca tttacagcac
     701  cagaaatcac agaggttact gagccggagg atcccaaaca agctgcgctt
     751  cgcgaagcta gacagaaaca acctgctgtc acacccgaat catacggtag
     801  agacacaggt gagaaatcta tgcgctctgt ttcaccacaa agagtgaaag
     851  ataaggatgt caacgttggc acgacaggca catttgtggt tccgagagtt
     901  aagctccata ctggcaaaat gcgccaacct agagtcaatg gaatctctgt
     951  agttaactta cagcatctcg caacttatga acctgagcaa cataacattg
    1001  ggaatacacg ctcaactcag gaacaatttc gagcatggta tgaaggtgtt
    1051  aagggtgatt atggcgttga tgacgctggg atggcaatct tgttgaatgg
    1101  attgatggta tggtgtatag agaatggaac atctccaaat ataaatggcg
    1151  tttggacgat gatggatggg gatgaacgag tgacgtatcc cataaagcca
    1201  ttactggatc atgcagtgcc tacttttagg caaatcatga cacacttcag
    1251  tgacgttgct gaggcgtata tagaaatgag aaatcgcacc aaggcatata
    1301  tgcctaggta tggattacaa cgtaacttga ctgatatgag tcttgcgcga
    1351  tatgcatttg atttctatga gctgcattca acaacacctg cacgtgctaa
    1401  agaagcacac atgcagatga aagcagctgc acttaagaat gcgcataatc
    1451  ggttgtttgg tttggatgga aacgtctcca cgcaagaaga ggatacggag
    1501  aggcacactg cgactgatgt tactagaaat atacataacc tcttaggaat
    1551  gaggggtgtg cattaggtga aactttgcac cgtatttatt tacttatgtg
    1601  gtttttagta tgcctttatc ttaaattcgt gtccttcagt cccgacagag
    1651  atggttgggt gtattggcag ggtgggcttt tagcctggtc catacacttg
    1701  agaagtttct ggtctattac gtatcataag ggactcttaa aagtgaggag
    1751  tacctcgtaa gaaaagcctt tttggttcgt gatcgagcc