Sequence of DPV Rose spring dwarf-associated virus
Rose spring dwarf-associated virus, complete genome.
ACC No: EU024678
Dated: 2008-06-04 | Length: 5808 | CRC: 8982269
ID EU024678; SV 1; linear; genomic RNA; STD; VRL; 5808 BP.
XX
AC EU024678;
XX
DT 04-JUN-2008 (Rel. 96, Created)
DT 04-JUN-2008 (Rel. 96, Last updated, Version 1)
XX
DE Rose spring dwarf-associated virus, complete genome.
XX
KW .
XX
OS Rose spring dwarf-associated virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus; unclassified Luteovirus.
XX
RN [1]
RP 1-5808
RX PUBMED; 18329064.
RA Salem N.M., Miller W.A., Rowhani A., Golino D.A., Moyne A.L., Falk B.W.;
RT "Rose spring dwarf-associated virus has RNA structural and gene-expression
RT features like those of Barley yellow dwarf virus";
RL Virology 375(2):354-360(2008).
XX
RN [2]
RP 1-5808
RA Salem N.M., Miller W.A., Rowhani A., Golino D.A., Moyne A.-L., Falk B.W.;
RT ;
RL Submitted (10-JUL-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology and Microbiology, University of California Riverside, 900
RL University Avenue, Riverside, CA 92521, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .5808
FT /organism="Rose spring dwarf-associated virus"
FT /lab_host="rose"
FT /isolate="California"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /db_xref="taxon:474454"
FT CDS join(187. .1308,1308. .2891)
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase P1-P2 fusion
FT protein"
FT /note="product derived from -1 ribosomal frameshift"
FT /protein_id="ABV89765.1"
FT /translation="MLLFEGLLTASARVVKDFISYIYSRLKSVYYSLKRWLWTLQGKFQ
FT PHDAFVAMVYGYMDDVEDFEVPLALEYEVTERELKEAQDELNRLESKLRFTSFNPWVNL
FT VKKTFTREVAPEPFWPVPSRPDCDDPCISSPLIEDEEEVSGPEPEPIFSQQKLDERLCM
FT EARMDVLNSEVKFDKVRERINIVYQEVRGARPFGKIFNTMHQRMKHVGKCLKRRSEASA
FT RSVEFEKRVNAKTDIADFHSLCEVEEVETGEFHPVKQDADGEDLPRLPKIEVVRRIKDN
FT CHRPAATWIREYVRCKNSQLSADEVSHATITRYVEQFCEKNKMDMDSRVFLMQRALLMV
FT PIPKPIDIDIAMTVHSPAARELRSIVDTAASSVFLNGLCRVPGFESPFTILGYPGIVIR
FT DGARPRKTSSYISYVSQVALGLNYQVPNPSLHNALVAVERRVFTVGKGDKIELPPQPKS
FT EIFQRLAYFAEGVIRHSGYCKTHSPLELAMSYESGKRALYLKAVRSLQSSPVNANDAKV
FT TAFLKMEKHLMCKPIAPRLICPRSKRYNVELGRRLKFNEKRIMRAIDAMFESPTILSGY
FT DSFRVGRIVAAKWGKFRDPVAIGVDASRFDQHVSRQALKFEHSVYNGIFCDPILKKLLK
FT WQLRNEVVLFVEDKMLQFTIDRMRMSGDINTSMGNKIIMTGLMHLYFRDLGVQAELCNN
FT GDDCVIICDKKDQRKFDNLAAWFLDFGFSMAIEDPVYELEKLEFCQGHPLCINGSYRMV
FT RKPESMSKDAHSMLSMKHHEDVKTFLSATAQCGLVLNSGVPILEAFHRCLYRTSGYKKV
FT SEGLIKKVISYGQDERLGGRRAIREEPVTMGNRMSFWKAYGVDPRTQVLVERYFDNLTV
FT NIELRGVKNLTPLLQSILVGVPDFPDFSQI"
FT CDS 187. .1311
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase P1"
FT /note="ORF1"
FT /protein_id="ABV89766.1"
FT /translation="MLLFEGLLTASARVVKDFISYIYSRLKSVYYSLKRWLWTLQGKFQ
FT PHDAFVAMVYGYMDDVEDFEVPLALEYEVTERELKEAQDELNRLESKLRFTSFNPWVNL
FT VKKTFTREVAPEPFWPVPSRPDCDDPCISSPLIEDEEEVSGPEPEPIFSQQKLDERLCM
FT EARMDVLNSEVKFDKVRERINIVYQEVRGARPFGKIFNTMHQRMKHVGKCLKRRSEASA
FT RSVEFEKRVNAKTDIADFHSLCEVEEVETGEFHPVKQDADGEDLPRLPKIEVVRRIKDN
FT CHRPAATWIREYVRCKNSQLSADEVSHATITRYVEQFCEKNKMDMDSRVFLMQRALLMV
FT PIPKPIDIDIAMTVHSPAARELRSIVDTAASSVF"
FT CDS 3006. .5048
FT /codon_start=1
FT /transl_except=(pos:3666. .3668,aa:OTHER)
FT /product="aphid transmission protein P5"
FT /note="translated from subgenomic RNA1 as a fusion protein
FT via read-through of the coat protein (P3) stop codon"
FT /protein_id="ABV89767.1"
FT /translation="MSTVVVRQQARNNSRRNGQAQQAQGRSRQPNKARPVVVQVQPSRN
FT GRRPRRRGGRRSSRRRGSRMASSRSHWEDYKFTINNLKASDAGVVKFGPSISQCSALKS
FT GIFKSFHEFKITNLNVKYITHAASTTSGAFAVEVDTSCTQTTLKSYLQTVPVAKCGQFS
FT WPAGKIRGTGWLPTPDPDKTPVDKDNQFFLLYAGNGPSSVAGQFVITARCWFQSPREXR
FT DAAPAPSPSPPSPTPAPTPAPTPQPERFFVYAGVPGVDIQTRETDDSIIVGRLNSERLR
FT YVEDEQQTLVDIRADWYSNNSVEAVPMLLFDLEEGSWSVDAECQGYQAVTAVGGSEDSN
FT WLGFIAYNNANGATWNVGEYNNVKITKLLNTSSWKKGHKDVVLNGCHFNDGQIIERDST
FT MSFHCEVGHGGGTILLVAPPVCKSDKYNYVVSYGEYTTKHMEFGSIAICFDEKNDGARA
FT GKFLGAPFPRAGHVVREQQTEIARFPAGSDVPIVKISDNDFATSTQPAAHILPVPSSVQ
FT LPDDPVSKKVRSWIENSSEDLRLAREAEQTDSDWEPLPPPAPPPGPRQLPTDTSGATQA
FT IRNQILRDHTQPYSGPGTPPVFDDIEDTRSTTRTESSRRSFLSGVLRPQLKPKSNLRPT
FT SSLPRKLTADQEARVKAVRESFGSAAAKRLRDEFLEGKVSPDQIY"
FT CDS 3006. .3668
FT /codon_start=1
FT /product="coat protein P3"
FT /note="ORF3; translated from subgenomic RNA1; occassional
FT read-through of stop codon produces P3-P5 fusion protein"
FT /protein_id="ABV89768.1"
FT /translation="MSTVVVRQQARNNSRRNGQAQQAQGRSRQPNKARPVVVQVQPSRN
FT GRRPRRRGGRRSSRRRGSRMASSRSHWEDYKFTINNLKASDAGVVKFGPSISQCSALKS
FT GIFKSFHEFKITNLNVKYITHAASTTSGAFAVEVDTSCTQTTLKSYLQTVPVAKCGQFS
FT WPAGKIRGTGWLPTPDPDKTPVDKDNQFFLLYAGNGPSSVAGQFVITARCWFQSPRE"
FT CDS 3055. .3615
FT /codon_start=1
FT /product="movement protein P4"
FT /note="ORF4; translated via leaky scanning on subgenomic
FT RNA1"
FT /protein_id="ABV89769.1"
FT /translation="MAKLNKHKDDPGSLTRLAQWLFKSNRPETDEGPDEEEVDARVDVV
FT EAEWPHHEATGKITSSQSTTLRRPTPGSLNLVPVYHSVLHSRVEFSSPSMNLRSQTSTS
FT STSPMRPQLLPVRSQLKSILPVPKQLLRATSRQSLLQNVDNSPGPPGRFVELDGCQHRI
FT PTKRQLTRTTNSFSSMQEMDPAR"
FT CDS 5051. .5176
FT /codon_start=1
FT /product="P6 protein"
FT /note="ORF6"
FT /protein_id="ABV89770.1"
FT /translation="MSYMYYHSWTIVDTIVILTLCLVLVFLLFVLHFLRRRWSQF"
FT CDS 5239. .5337
FT /codon_start=1
FT /product="P7 protein"
FT /note="ORF7"
FT /protein_id="ABV89771.1"
FT /translation="MLVVSSGGLVNLRRITCVPPLDNNPFLHQTKN"
FT CDS 5654. .5776
FT /codon_start=1
FT /product="P8 protein"
FT /note="ORF8"
FT /protein_id="ABV89772.1"
FT /translation="MSNQPLPLSSHLATPDTNVKGGLVNVSIHPRALPSQKGVF"
XX
SQ Sequence 5808 BP; 1465 A; 1412 C; 1402 G; 1529 T; 0 other;
eu024678 Length: 5808 04-JUN-2008 Type: N Check: 8855 ..
1 agtaaaggct gacaccctta caaaagtatt ctttttctta agattgcaga
51 gtgattttcc tcctttctta agaaactgaa tctctggccg gctgttttgt
101 gatcagttcc caggcttcta acaactgtca aacatcgtac acttccacct
151 ttcactccac ccttctgcag cctcttgacc aacaggatgt tgctcttcga
201 aggcttatta accgcctccg cccgtgttgt aaaagatttc atttcataca
251 tttacagccg tctcaaatct gtatattatt ccttgaagag atggctgtgg
301 acgttacagg ggaaatttca gccccatgat gcatttgtcg ccatggtcta
351 cggatacatg gatgacgtgg aagacttcga ggtgcctctt gccctcgagt
401 atgaggtcac tgagcgggag ctcaaagaag cccaggacga gcttaatcgc
451 cttgagagta aactgaggtt tacttctttt aatccttggg taaatctggt
501 caagaagacc ttcacccgcg aagtggcacc tgagcccttc tggcctgttc
551 cgtctcggcc cgactgtgac gatccctgca tatctagtcc tctgattgaa
601 gatgaagagg aagtgtctgg gcctgagccg gaaccaatct tttcccagca
651 aaagctggat gaacgacttt gtatggaagc gaggatggat gtcctcaatt
701 ccgaggttaa gttcgacaaa gtcagagagc ggatcaacat tgtttaccaa
751 gaggtccgtg gtgctcgccc atttggcaaa attttcaaca ccatgcatca
801 gagaatgaag catgtgggta agtgcctgaa gaggcgctct gaagcctcag
851 ctcgatctgt tgagtttgaa aagcgagtca acgctaaaac tgacattgcc
901 gacttccact ctttatgtga ggtcgaggag gtggagacgg gtgagtttca
951 cccagtcaag caggatgccg acggcgagga cttgcctagg ctgcccaaga
1001 tagaagttgt ccggagaatt aaggataact gtcacagacc tgccgccacc
1051 tggatcagag aatatgtgcg gtgcaagaac agccaactct ctgcagatga
1101 agtctctcat gccaccatta caaggtatgt ggagcaattc tgcgagaaaa
1151 acaagatgga catggattcc cgtgtcttct taatgcaaag agcactcctc
1201 atggtcccaa tccccaagcc cattgatata gacatagcaa tgactgtcca
1251 ctcacccgca gcaagagagt tgcggtctat tgtggacacc gccgcttcgt
1301 cggtttttta aatgggctct gtcgcgtacc aggatttgaa tcccccttta
1351 ctattttggg gtatcctggt atcgtgatac gtgacggggc acgtcctagg
1401 aagactagta gttatattag ttatgttagt caggtagccc taggtttaaa
1451 ttatcaagtt cctaatcctt cactgcataa tgctcttgtt gcagtggagc
1501 gtcgtgtgtt caccgtgggc aaaggtgaca aaattgagct cccccctcaa
1551 cccaagtctg agatcttcca gcgcttggca tacttcgcgg agggggtgat
1601 caggcattct gggtactgca agacccattc tccccttgaa cttgctatgt
1651 cttacgagtc tggcaagagg gcgctttacc tgaaagctgt ccgttctctt
1701 cagtcttcac ctgttaatgc aaatgatgcc aaggtgactg cctttctgaa
1751 gatggagaaa catttgatgt gcaagcctat tgcacctcgc ctgatctgcc
1801 ctcgctccaa gaggtacaat gttgagctgg ggaggcgtct gaaattcaac
1851 gaaaaacgca tcatgcgtgc aattgacgcc atgtttgaaa gtcccacaat
1901 tctttccggt tacgatagtt ttagagtagg taggatagtg gctgcgaagt
1951 ggggtaagtt tcgtgacccc gttgctattg gagtagacgc cagtcgtttc
2001 gaccagcatg tctctcgaca agctttgaag tttgaacata gtgtttacaa
2051 tgggatcttc tgtgatccta ttcttaagaa acttctcaag tggcaactca
2101 gaaatgaggt tgtccttttt gtcgaagata agatgctaca gtttaccatc
2151 gatcgaatgc gaatgtctgg tgacatcaat acttcaatgg gcaacaagat
2201 aatcatgaca ggactcatgc atttgtactt ccgagatttg ggagtccagg
2251 ctgagctgtg caacaatggg gatgattgcg tgattatctg tgacaagaag
2301 gaccagcgta aatttgataa tcttgccgct tggtttttgg attttgggtt
2351 ttccatggct attgaagatc cagtttacga actggagaag cttgagttct
2401 gccagggaca tccactgtgc atcaacggca gttacaggat ggtccgcaaa
2451 cccgagagca tgtctaaaga cgcgcactct atgcttagca tgaaacacca
2501 cgaggatgtc aagacattcc tcagtgccac ggcacaatgt ggtctcgttc
2551 ttaactctgg ggtaccgatc ctggaggcgt tccataggtg cttataccgt
2601 acttctgggt acaagaaagt ctctgagggt ttgataaaga aggtgatcag
2651 ttatggtcaa gatgagcgac tcggtggcag gcgtgccatt cgcgaggaac
2701 cagtaactat gggaaatagg atgagtttct ggaaagctta cggagttgac
2751 ccgagaacac aggtccttgt cgaacgatat ttcgacaatt tgacggtcaa
2801 tatcgaactc cgcggtgtaa agaacttgac acctctttta caaagcattc
2851 ttgtgggagt ccctgacttc cctgatttca gccaaatata gattataaac
2901 tattagcagg ttattgctta ggttttattt catcagtacc actaactata
2951 ggcttgtctt acttagctta ccttagaatt agcttacagg tccgtaaaat
3001 cattaatgag tacggtcgtg gtgagacaac aggctcgcaa caactctaga
3051 cgcaatggcc aagctcaaca agcacaagga cgatccaggc agcctaacaa
3101 ggctcgccca gtggttgttc aagtccaacc gtcccgaaac ggacgaaggc
3151 cccgacgaag aggaggtcga cgctcgagtc gacgtcgtgg aagcagaatg
3201 gcctcatcac gaagccactg ggaagattac aagttcacaa tcaacaacct
3251 taaggcgtcc gacgccgggg tcgttaaatt tggtcccagt atatcacagt
3301 gttctgcact caagagtgga attttcaagt ccttccatga atttaagatc
3351 acaaacctca acgtcaagta catcacccat gcggcctcaa ctacttccgg
3401 tgcgttcgca gttgaagtcg atacttcctg tacccaaaca actcttaaga
3451 gctacctcca gacagtccct gttgcaaaat gtggacaatt ctcctggccc
3501 gccgggaaga ttcgtggaac tggatggttg ccaacaccgg atcccgacaa
3551 aacgccagtt gacaaggaca accaattctt tctcctctat gcaggaaatg
3601 gacccagctc ggtagcgggt cagtttgtca tcactgcgcg ttgctggttt
3651 cagagtcccc gtgaatgacg ggacgctgct cctgccccat ccccatcacc
3701 tccttctccg acacctgctc ctactcctgc accaacacct cagccagaaa
3751 gattctttgt ctatgctggc gtccctggcg ttgacattca aactcgtgag
3801 accgatgaca gcattattgt tggtcggttg aactctgaac gtctacggta
3851 tgttgaggat gaacaacaaa ctcttgttga catacgtgct gactggtact
3901 cgaacaactc agttgaggcc gtccctatgt tactattcga ccttgaagaa
3951 gggtcgtggt ctgttgatgc ggagtgtcaa ggatatcaag cagttactgc
4001 tgtcggtggt agtgaggata gcaattggct tggttttatc gcatacaata
4051 atgcaaatgg cgccacctgg aatgtaggtg agtacaacaa tgttaaaatc
4101 acaaaacttc tcaacacctc ttcttggaag aaggggcata aagacgttgt
4151 gctcaacggt tgccatttta atgacggtca aatcattgaa cgcgattcaa
4201 ccatgtcgtt ccactgtgaa gtgggacatg gcggaggtac aatcctcctg
4251 gttgctcccc ctgtttgtaa aagtgacaag tacaactatg ttgtctctta
4301 cggcgagtat accaccaaac acatggagtt tgggtccatt gctatatgtt
4351 ttgatgagaa gaatgatgga gcaagagcag ggaaattctt gggcgctcct
4401 ttcccccgtg caggtcacgt ggtgcgtgag caacaaacag aaattgcccg
4451 atttccagca ggtagcgacg tcccgattgt aaagatcagt gacaatgact
4501 ttgctacctc tacacaacca gctgcacata ttctccctgt tccttcatct
4551 gttcaacttc ctgacgatcc tgtctctaag aaggtgcgat cttggatcga
4601 gaattcgagc gaggatttgc gcctggcgcg tgaagctgaa cagactgaca
4651 gcgactggga accccttcca ccacctgcac cccctcctgg acccaggcaa
4701 ttgcccaccg acacctcagg tgccactcag gctatccgca accagatcct
4751 gcgtgatcat acgcagccct actctggccc tggtactccg cccgtcttcg
4801 atgatattga ggatacgagg tcaaccaccc gtactgaaag ttcgcggcgg
4851 agttttctca gtggtgtcct cagaccccag ctcaaaccaa agagtaattt
4901 gcgtccgact tcctctctcc cgcgtaagct aactgctgac caggaggcac
4951 gagtgaaggc tgtgcgcgag tcttttgggt ctgccgctgc taaacgtctt
5001 agagacgagt ttcttgaggg gaaggtcagt cccgatcaga tctactgacc
5051 atgtcgtaca tgtattacca ctcctggacc attgtagata caatagttat
5101 attaactctc tgtttggttt tggtttttct tctttttgtt ttgcattttc
5151 tgcgtcgcag atggagccaa ttctaggctt cgcagtgctg gatcctggta
5201 aacaggcgtt caagtaacct aagcttcggt gaagggcaat gcttgttgta
5251 agctcgggag gtcttgtcaa cctccgtcgt atcacctgcg tacctcccct
5301 ggataataac ccatttctgc accagactaa aaattaaata tttgcaaatc
5351 acggttttgt ttcacggcaa aacccaaaac ataagtaaga tgggcctaac
5401 tagccctgtg gagaggctac cccttgaata agggtagtgg ttgcacgtct
5451 tggcccgaca gattccggcc gaccatgctt ctgtggtata cactgcacca
5501 gtaagacctg gtttaacaaa actttatcct acccacgatg agatgagtgg
5551 gcggcgtaaa ctttgtggaa ttttacagag aaatctgtaa ttctgcacat
5601 gtttgcgaga ggggtctcca gtaccccttt atagaaataa gcgcttcttt
5651 gggatgtcta atcaacctct cccactgagc tcgcatctgg cgactcccga
5701 cactaatgtg aagggaggtt tggtgaatgt tagtattcac cctagggctc
5751 ttcctagtca aaagggggta ttttgactgg agccaccgaa aggcagtgct
5801 ccacaccc