Sequence of DPV Swan circovirus

Cygnus olor circovirus isolate H51, complete genome.

ACC No: EU056309

Dated: 2008-02-27 | Length: 1783 | CRC: -2006773749

                
ID   EU056309; SV 1; circular; genomic DNA; STD; VRL; 1783 BP.
XX
AC   EU056309;
XX
DT   27-FEB-2008 (Rel. 94, Created)
DT   27-FEB-2008 (Rel. 94, Last updated, Version 1)
XX
DE   Cygnus olor circovirus isolate H51, complete genome.
XX
KW   .
XX
OS   Cygnus olor circovirus
OC   Viruses; ssDNA viruses; Circoviridae; Circovirus.
XX
RN   [1]
RP   1-1783
RX   DOI; 10.1016/j.virusres.2007.11.001.
RX   PUBMED; 18082907.
RA   Halami M.Y., Nieper H., Muller H., Johne R.;
RT   "Detection of a novel circovirus in mute swans (Cygnus olor) by using
RT   nested broad-spectrum PCR";
RL   Virus Res. 132(1-2):208-212(2008).
XX
RN   [2]
RP   1-1783
RA   Halami Y.M., Nieper H., Mueller H., Johne R.;
RT   ;
RL   Submitted (25-JUL-2007) to the EMBL/GenBank/DDBJ databases.
RL   Federal Institute for Risk Assessment, Diedersdorfer Weg 1, Berlin 12277,
RL   Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1783
FT                   /organism="Cygnus olor circovirus"
FT                   /host="mute swan (Cygnus olor)"
FT                   /isolate="H51"
FT                   /mol_type="genomic DNA"
FT                   /country="Germany"
FT                   /collection_date="2006"
FT                   /db_xref="taxon:459957"
FT   CDS             48. .929
FT                   /codon_start=1
FT                   /product="putative replication-associated protein"
FT                   /db_xref="GOA:B0YPT4"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:B0YPT4"
FT                   /protein_id="ABU48443.1"
FT                   /translation="MAKKSDYGYKRWVFTINNPTFEDYVSVIEFCTAENCKFAIVGEEK
FT                   GEKEGTPHLQGFLSLRKNARAAALEENLGGRAWLSRAVGSDEENEEYCSKETTYLRVGT
FT                   PNRKGRSSDLNAAASEVLAGAPMTDVARKYPTTYIMFGRGLERLRQLIVETLRDWKTEV
FT                   IVLIGPPGSGKSRYVFEFPAERKYYKARGKWWDGYEGNDVVVMDDFYGWLPYDDLLRIC
FT                   DRYPIRVEYKGGMTQFVAKTLIITSNREPREWYKCEVDCTALYRRIDRYLVQTPDGFLE
FT                   APEFMLPYKIKY"
FT   CDS             complement(968. .1723)
FT                   /codon_start=1
FT                   /product="putative capsid protein"
FT                   /db_xref="InterPro:IPR003383"
FT                   /db_xref="UniProtKB/TrEMBL:B0YPT5"
FT                   /protein_id="ABU48444.1"
FT                   /translation="MSLSRAGSRRLYHRRRRAYYRRRRYGRRRLRIPRIRRRFTVFHVK
FT                   QTQNIPFTFWSSATPDPTDKWMSLSLESNSATLNKPKPGLNLRFAMFGDRLPGSGNAYH
FT                   YPFDYYMIKLVKVELRPAFNPFQKQKTQGSTYIDKEGDITEVPATTPWSVDPYAAMSSR
FT                   KTWTPDRYHKRVFIPKPTIQSSQTTGTRFSTWFVPGRRNMWINSTQDQVIHYGMGMSLR
FT                   APAEDAGAYPVECTVTFYIAFGQWTGLSP"
XX
SQ   Sequence 1783 BP; 403 A; 399 C; 508 G; 473 T; 0 other;

eu056309 Length: 1783  27-FEB-2008  Type: N  Check: 3566  ..

       1  accggcgcct ctactacgta ctacagcccg cccgagcagc gaccgagatg
      51  gcgaaaaaga gcgattacgg ctacaaaagg tgggtgttca cgattaataa
     101  ccctaccttt gaagattatg tttctgttat agagttctgt accgcggaaa
     151  actgcaagtt cgcgatcgtc ggagaagaga aaggagagaa agagggaaca
     201  cctcacctgc agggattcct gtctctacga aagaatgctc gggccgctgc
     251  ccttgaagag aacctgggag gaagagcatg gctgtctcgt gctgtgggat
     301  ctgacgaaga gaacgaagaa tattgttcca aagagacgac ataccttcga
     351  gttggaacgc caaatcgtaa aggccgttcg tccgatctga acgccgctgc
     401  atccgaagtg ctcgccggcg ctccgatgac tgacgtggcc cggaagtacc
     451  ccaccactta tataatgttc gggcgtggct tggaacgcct ccgtcagctg
     501  atcgttgaga cgcttcgtga ttggaagacg gaggtgattg ttctgattgg
     551  tccgcccggg agcgggaaga gccgttacgt gtttgaattt cccgccgagc
     601  ggaagtacta taaagcgcgc ggaaagtggt gggatgggta tgagggtaat
     651  gacgtcgtcg taatggacga cttttatggg tggttaccgt acgatgattt
     701  gttgagaatt tgtgaccgat acccaatccg tgttgagtat aagggtggga
     751  tgacgcagtt cgttgccaag acccttatca taacgtctaa ccgtgaaccc
     801  cgcgaatggt ataaatgtga ggtggattgt accgccctct accgtcgtat
     851  cgatcggtat ttggtgcaga cccctgatgg ttttctggaa gcccccgaat
     901  tcatgctacc atataaaata aagtattaga cacgtaaact ttattgagag
     951  tgtgtggtta cattttgtta aggtgagagc ccggtccatt gaccgaatgc
    1001  gatatagaag gttaccgtac attctacagg gtatgcacca gcgtcttctg
    1051  cgggtgccct gagggacatg cccatgccgt aatgtatgac ctggtcctgt
    1101  gttgagttga tccacatgtt tctccttccc ggtacgaacc atgtgctgaa
    1151  tcttgtgcct gttgtttggc tcgattgaat ggtcggtttc ggtatgaata
    1201  ctcgtttgtg gtaccggtca ggcgtccagg tcttacgtga gctcattgct
    1251  gcatatggat ctacagacca cggtgttgtt gcaggcacct ctgttatatc
    1301  accttcctta tctatgtatg tgctgccttg tgtcttctgc ttttggaagg
    1351  ggttgaacgc gggtcgtagt tcaactttta ctagttttat catgtagtag
    1401  tcgaaggggt aatggtacgc attaccggat cctggcagtc tgtctccgaa
    1451  catagcgaaa cggaggttca ggccaggttt cggtttgttc agggttgcgg
    1501  agttgctttc cagggagagg gacatccatt tgtcggttgg atcgggcgtt
    1551  gctgaagacc agaacgtgaa cggtatgttc tgtgtctgtt taacgtggaa
    1601  tactgtaaag cggcgtctta ttcttgggat cctaagcctt cgtcttccat
    1651  atcttcgtct gcggtagtag gcccgcctac gacgatgata tagacgcctg
    1701  gaccccgccc tggacagcga catgacggac agtgacttcc tgtgggcgga
    1751  gaaagcaccg tcagaggcgc cgtatatatt att