Sequence of DPV Swan circovirus
Cygnus olor circovirus isolate H51, complete genome.
ACC No: EU056309
Dated: 2008-02-27 | Length: 1783 | CRC: -2006773749
ID EU056309; SV 1; circular; genomic DNA; STD; VRL; 1783 BP. XX AC EU056309; XX DT 27-FEB-2008 (Rel. 94, Created) DT 27-FEB-2008 (Rel. 94, Last updated, Version 1) XX DE Cygnus olor circovirus isolate H51, complete genome. XX KW . XX OS Cygnus olor circovirus OC Viruses; ssDNA viruses; Circoviridae; Circovirus. XX RN [1] RP 1-1783 RX DOI; 10.1016/j.virusres.2007.11.001. RX PUBMED; 18082907. RA Halami M.Y., Nieper H., Muller H., Johne R.; RT "Detection of a novel circovirus in mute swans (Cygnus olor) by using RT nested broad-spectrum PCR"; RL Virus Res. 132(1-2):208-212(2008). XX RN [2] RP 1-1783 RA Halami Y.M., Nieper H., Mueller H., Johne R.; RT ; RL Submitted (25-JUL-2007) to the EMBL/GenBank/DDBJ databases. RL Federal Institute for Risk Assessment, Diedersdorfer Weg 1, Berlin 12277, RL Germany XX FH Key Location/Qualifiers FH FT source 1. .1783 FT /organism="Cygnus olor circovirus" FT /host="mute swan (Cygnus olor)" FT /isolate="H51" FT /mol_type="genomic DNA" FT /country="Germany" FT /collection_date="2006" FT /db_xref="taxon:459957" FT CDS 48. .929 FT /codon_start=1 FT /product="putative replication-associated protein" FT /db_xref="GOA:B0YPT4" FT /db_xref="InterPro:IPR003365" FT /db_xref="UniProtKB/TrEMBL:B0YPT4" FT /protein_id="ABU48443.1" FT /translation="MAKKSDYGYKRWVFTINNPTFEDYVSVIEFCTAENCKFAIVGEEK FT GEKEGTPHLQGFLSLRKNARAAALEENLGGRAWLSRAVGSDEENEEYCSKETTYLRVGT FT PNRKGRSSDLNAAASEVLAGAPMTDVARKYPTTYIMFGRGLERLRQLIVETLRDWKTEV FT IVLIGPPGSGKSRYVFEFPAERKYYKARGKWWDGYEGNDVVVMDDFYGWLPYDDLLRIC FT DRYPIRVEYKGGMTQFVAKTLIITSNREPREWYKCEVDCTALYRRIDRYLVQTPDGFLE FT APEFMLPYKIKY" FT CDS complement(968. .1723) FT /codon_start=1 FT /product="putative capsid protein" FT /db_xref="InterPro:IPR003383" FT /db_xref="UniProtKB/TrEMBL:B0YPT5" FT /protein_id="ABU48444.1" FT /translation="MSLSRAGSRRLYHRRRRAYYRRRRYGRRRLRIPRIRRRFTVFHVK FT QTQNIPFTFWSSATPDPTDKWMSLSLESNSATLNKPKPGLNLRFAMFGDRLPGSGNAYH FT YPFDYYMIKLVKVELRPAFNPFQKQKTQGSTYIDKEGDITEVPATTPWSVDPYAAMSSR FT KTWTPDRYHKRVFIPKPTIQSSQTTGTRFSTWFVPGRRNMWINSTQDQVIHYGMGMSLR FT APAEDAGAYPVECTVTFYIAFGQWTGLSP" XX SQ Sequence 1783 BP; 403 A; 399 C; 508 G; 473 T; 0 other; eu056309 Length: 1783 27-FEB-2008 Type: N Check: 3566 .. 1 accggcgcct ctactacgta ctacagcccg cccgagcagc gaccgagatg 51 gcgaaaaaga gcgattacgg ctacaaaagg tgggtgttca cgattaataa 101 ccctaccttt gaagattatg tttctgttat agagttctgt accgcggaaa 151 actgcaagtt cgcgatcgtc ggagaagaga aaggagagaa agagggaaca 201 cctcacctgc agggattcct gtctctacga aagaatgctc gggccgctgc 251 ccttgaagag aacctgggag gaagagcatg gctgtctcgt gctgtgggat 301 ctgacgaaga gaacgaagaa tattgttcca aagagacgac ataccttcga 351 gttggaacgc caaatcgtaa aggccgttcg tccgatctga acgccgctgc 401 atccgaagtg ctcgccggcg ctccgatgac tgacgtggcc cggaagtacc 451 ccaccactta tataatgttc gggcgtggct tggaacgcct ccgtcagctg 501 atcgttgaga cgcttcgtga ttggaagacg gaggtgattg ttctgattgg 551 tccgcccggg agcgggaaga gccgttacgt gtttgaattt cccgccgagc 601 ggaagtacta taaagcgcgc ggaaagtggt gggatgggta tgagggtaat 651 gacgtcgtcg taatggacga cttttatggg tggttaccgt acgatgattt 701 gttgagaatt tgtgaccgat acccaatccg tgttgagtat aagggtggga 751 tgacgcagtt cgttgccaag acccttatca taacgtctaa ccgtgaaccc 801 cgcgaatggt ataaatgtga ggtggattgt accgccctct accgtcgtat 851 cgatcggtat ttggtgcaga cccctgatgg ttttctggaa gcccccgaat 901 tcatgctacc atataaaata aagtattaga cacgtaaact ttattgagag 951 tgtgtggtta cattttgtta aggtgagagc ccggtccatt gaccgaatgc 1001 gatatagaag gttaccgtac attctacagg gtatgcacca gcgtcttctg 1051 cgggtgccct gagggacatg cccatgccgt aatgtatgac ctggtcctgt 1101 gttgagttga tccacatgtt tctccttccc ggtacgaacc atgtgctgaa 1151 tcttgtgcct gttgtttggc tcgattgaat ggtcggtttc ggtatgaata 1201 ctcgtttgtg gtaccggtca ggcgtccagg tcttacgtga gctcattgct 1251 gcatatggat ctacagacca cggtgttgtt gcaggcacct ctgttatatc 1301 accttcctta tctatgtatg tgctgccttg tgtcttctgc ttttggaagg 1351 ggttgaacgc gggtcgtagt tcaactttta ctagttttat catgtagtag 1401 tcgaaggggt aatggtacgc attaccggat cctggcagtc tgtctccgaa 1451 catagcgaaa cggaggttca ggccaggttt cggtttgttc agggttgcgg 1501 agttgctttc cagggagagg gacatccatt tgtcggttgg atcgggcgtt 1551 gctgaagacc agaacgtgaa cggtatgttc tgtgtctgtt taacgtggaa 1601 tactgtaaag cggcgtctta ttcttgggat cctaagcctt cgtcttccat 1651 atcttcgtct gcggtagtag gcccgcctac gacgatgata tagacgcctg 1701 gaccccgccc tggacagcga catgacggac agtgacttcc tgtgggcgga 1751 gaaagcaccg tcagaggcgc cgtatatatt att