Sequence of DPV Cocksfoot mild mosaic virus
Cocksfoot mild mosaic virus isolate Scotland, complete genome.
ACC No: EU081018
Dated: 2009-09-22 | Length: 4198 | CRC: 1887809518
ID EU081018; SV 1; linear; genomic RNA; STD; VRL; 4198 BP.
XX
AC EU081018;
XX
DT 02-AUG-2008 (Rel. 96, Created)
DT 22-SEP-2009 (Rel. 102, Last updated, Version 2)
XX
DE Cocksfoot mild mosaic virus isolate Scotland, complete genome.
XX
KW .
XX
OS Cocksfoot mild mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus.
XX
RN [1]
RP 1-4198
RX PUBMED; 19693646.
RA Ziegler A., Cowan G., Torrance L.;
RT "Comparative sequence analysis and serological and infectivity studies
RT indicate that cocksfoot mild mosaic virus is a member of the genus
RT Panicovirus";
RL Arch. Virol. 154(9):1545-1549(2009).
XX
RN [2]
RP 1-4198
RA Ziegler A., Cowan G.H., Torrance L.;
RT ;
RL Submitted (03-AUG-2007) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Scottish Crop Research Institute, Invergowrie, Dundee,
RL Scotland DD2 5DA, UK
XX
FH Key Location/Qualifiers
FH
FT source 1. .4198
FT /organism="Cocksfoot mild mosaic virus"
FT /host="Phleum pratense (timothy grass)"
FT /isolate="Scotland"
FT /mol_type="genomic RNA"
FT /country="United Kingdom:Scotland"
FT /db_xref="taxon:479060"
FT CDS 100. .2904
FT /codon_start=1
FT /transl_except=(pos:1186. .1188,aa:OTHER)
FT /product="p106"
FT /note="polymerase readthrough"
FT /db_xref="GOA:B4XRZ5"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:B4XRZ5"
FT /protein_id="ABW74550.1"
FT /translation="MEFFSSALTRLDSTKAATLDWSKFHALFHLCPRAAYAWLKIQLGS
FT SILGDLVSFLSRAARALCYLPVAVQEIARSLCERYNAASARAGDAFFYSRLFDTARANR
FT WSYLDDSSPPDMGASTVSWVTKVDPLRLPRRALSTVGAGLALYGGYRTLKFLWNMWKFQ
FT RRQDAIHSAKTRTQFLEKEYQEVRACMEEMGRAALRTRMEDCILKDVITPEEKDEEGNV
FT VQKEVSQMIIKLYGKFVRQLVALAKVEFNGVPKNTEANQLAVWRFMYRCCEKRGLNALD
FT ANRALSSALPLVFLPSTYDHNMAITMTCEDTVQTLQRYRDAFAQKSSLHRLLDNPLSGQ
FT AWKEWANTILYGDQATGLHFAKXGGIEKWQGVQCKRTRVRHPRLRCHFKDTDHKVSHIH
FT RVAGMGDQYTFGLFNNSAGNLERGLAERVFCVKNPQCVHGLDDEFIPTPQPIPGHFRRL
FT NKYRKDIIRHVGRKGPIYYEKFLAYYTGPKLVTYSKAVDSLSEMAVRKEDARLKTFVKA
FT EKLNLTLKPDPCPRVIQPRDPRYNVEMGRYLKHIEHPIYAAIDKMFGGKTIFKGMSVEA
FT MGHEIHKKMRQFPRPCAIGFDASRFDQHVSVEALRYEHSIYKKIHGYPELLNLLCEWQI
FT HNDGTAYAKDGFFKYSVNGCRMNTSLGNCILAALISKDLIDRLGITAALVNNGDDNVLI
FT CSVDDEAVVVEHLYSHFLDYGFEVVAEAPKYITEQVEFCQMQPVFDGTQYIMVRNPAVS
FT MSKDSHSITPFYTPNTMKKWIRAVGECGLSLTGGIPIKQSYYKCFIRNGADKGKIHTSR
FT EFASGFQALSKLSTRKERDISTQSRYSFYLAFGYTPDEQVAMENYFDKLVIDPNFSDSG
FT SPARASECLLLQLIPKQPTTHSHKRPNKIAKQPAPQDSTWEPVSLAEVQTLLPLGTTPH
FT LQAS"
FT CDS 100. .1188
FT /codon_start=1
FT /product="p41"
FT /note="polymerase"
FT /db_xref="UniProtKB/TrEMBL:B4XRZ6"
FT /protein_id="ABW74549.1"
FT /translation="MEFFSSALTRLDSTKAATLDWSKFHALFHLCPRAAYAWLKIQLGS
FT SILGDLVSFLSRAARALCYLPVAVQEIARSLCERYNAASARAGDAFFYSRLFDTARANR
FT WSYLDDSSPPDMGASTVSWVTKVDPLRLPRRALSTVGAGLALYGGYRTLKFLWNMWKFQ
FT RRQDAIHSAKTRTQFLEKEYQEVRACMEEMGRAALRTRMEDCILKDVITPEEKDEEGNV
FT VQKEVSQMIIKLYGKFVRQLVALAKVEFNGVPKNTEANQLAVWRFMYRCCEKRGLNALD
FT ANRALSSALPLVFLPSTYDHNMAITMTCEDTVQTLQRYRDAFAQKSSLHRLLDNPLSGQ
FT AWKEWANTILYGDQATGLHFAK"
FT CDS 2733. .2951
FT /codon_start=1
FT /product="p8"
FT /note="possible movement protein"
FT /db_xref="GOA:B4XRZ7"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProtKB/TrEMBL:B4XRZ7"
FT /protein_id="ABW74551.1"
FT /translation="MSTPPTNPQTADDTLAQAPKQDRQATRAARLNVGAGIARRSADAA
FT ATRDDTASASFVIIAERVDVTNNFNFG"
FT CDS 2954. .3136
FT /codon_start=1
FT /product="p6.8"
FT /note="possible movement protein"
FT /db_xref="UniProtKB/TrEMBL:B4XRZ8"
FT /protein_id="ABW74552.1"
FT /translation="MATGTCHCPDNPFVWPLVTVVLILLIIIVASVTSTGPVIIPPSHN
FT TTYHHEKYQNIEVQK"
FT CDS 3133. .3870
FT /codon_start=1
FT /product="p26"
FT /note="coat protein"
FT /db_xref="GOA:B4XRZ9"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:B4XRZ9"
FT /protein_id="ABW74553.1"
FT /translation="MNGGNTSNRRGRGKALQRRTNKPPRSRSIERARPLAYGQAVGPSP
FT PRTVAYRRGRQVNTQPEIILRITAKTTDNYTTVPIIPALLFDPSTQPGYGGRAQYMAGL
FT SQLHSQHEWRRLQFTWIPSCATVTPGNVVLKFFPNYRTPLPTVLEDLMDTSSLTFSPYE
FT KHTFSVAGRISGLKYNIGATAFLALSDEDKGDYSIGRLVIGTTSQVSAVSLGIIQMVPD
FT VEFSGPVTTPVAPTPAATAAAPA"
FT CDS 3137. .3535
FT /codon_start=1
FT /product="p15"
FT /note="unknown function"
FT /db_xref="UniProtKB/TrEMBL:B4XS00"
FT /protein_id="ABW74554.1"
FT /translation="MEAIPLTEGDVARHYKDGLISLLEVGPSSVLAHWPMAKLWARHPP
FT GQWLIDEAGRSIPSRKSYFASLPRRPITTRLCPSYLRSCSTPAHNLDMGDELSIWPVYL
FT SSTLNMSGGGCSSPGYPAVPRLHREMWF"
XX
SQ Sequence 4198 BP; 1086 A; 1185 C; 1053 G; 874 T; 0 other;
eu081018 Length: 4198 22-SEP-2009 Type: N Check: 8474 ..
1 gggaactcgg caaaattccc gttcgcgtac aacacgcgtg ctcgcggcag
51 gcactcaact tgtgcatcag cggcgctaaa cgtacacagc gtattgccca
101 tggaattctt ctcctccgcc ctcaccaggc tcgacagtac caaggcggca
151 accttggact ggtccaaatt ccatgccctc ttccacctct gcccccgtgc
201 tgcttacgct tggctcaaaa tccaactcgg gtcgtcaatc cttggcgact
251 tggtgtcttt cttgtctcga gctgcacgcg ccctctgcta cctacctgtg
301 gcggttcaag aaatagcccg gtctctatgc gagagataca acgccgccag
351 tgctcgcgct ggggacgcgt tcttctacag ccggctgttc gacactgcta
401 gagccaacag gtggagctac ctagacgaca gtagtccccc cgacatgggc
451 gcctctactg tgtcctgggt caccaaggtg gaccctctga gattgccgcg
501 tcgggcgctc tcaacggtcg gagctgggct agccctttac gggggctaca
551 gaacgctcaa gttcctgtgg aacatgtgga agttccagag aagacaggat
601 gccatccact cggcaaagac ccgcacccaa ttcctggaaa aggaatacca
651 ggaggtccgg gcgtgcatgg aagaaatggg gcgcgctgcc ctacgtaccc
701 ggatggaaga ctgcatcctt aaagacgtca tcactcctga ggaaaaagac
751 gaagaaggga acgtggtaca aaaggaggta tcgcagatga taatcaagct
801 ctacggcaag tttgtgaggc aactcgtcgc cctcgcaaag gttgaattca
851 acggtgttcc aaagaacaca gaagccaacc aacttgcagt ctggaggttc
901 atgtacagat gctgcgagaa gagggggcta aacgccttag acgcgaacag
951 ggccctttcc agcgccctgc cgcttgtatt cctcccctcg acctacgacc
1001 acaacatggc cataacgatg acgtgcgaag acactgtgca gaccctgcaa
1051 agatataggg acgcattcgc acagaaaagt agcctccaca ggctactcga
1101 caaccctctc tctgggcagg catggaaaga atgggctaac accattctat
1151 atggagacca ggcaactggt ctccatttcg ccaaataggg gggtatcgaa
1201 aagtggcagg gggtgcagtg taaacgtaca cgcgtccggc accccagact
1251 cagatgccac tttaaagata cggaccacaa agttagccac atacacaggg
1301 ttgccgggat gggcgaccag tacacttttg ggctcttcaa caacagtgcg
1351 gggaacttag agcgtgggct cgcagaacgg gtattttgcg tcaagaatcc
1401 gcaatgtgta cacggattgg acgatgaatt cataccaacc ccacaaccca
1451 tcccggggca cttccgtcgc ctcaacaagt accgcaaaga tattataaga
1501 cacgtcggcc gcaagggccc catttactat gagaagttcc tggcttacta
1551 cactggcccc aagctggtga cttatagtaa ggctgttgat tccctctcgg
1601 aaatggccgt ccggaaagaa gacgctcgtc tgaaaacctt tgttaaagcg
1651 gaaaaactca acctcaccct taagcctgac ccctgccccc gcgttatcca
1701 accgcgcgac ccgcgctaca atgtggaaat gggtaggtac ctcaagcaca
1751 ttgaacatcc catctacgca gccattgaca agatgtttgg tgggaaaacc
1801 atatttaagg gtatgagcgt ggaagctatg ggacacgaga tccacaagaa
1851 aatgcgccaa tttccaagac catgcgcaat tggattcgat gcttccagat
1901 ttgaccaaca cgtttctgtt gaagcactcc ggtatgagca ctcaatatac
1951 aagaaaatac acggatatcc tgaactgttg aaccttctct gtgaatggca
2001 gatccacaac gatggaactg cctatgcaaa agatggcttc ttcaaatact
2051 ccgtgaatgg ttgtagaatg aacacgtccc tcgggaattg tattctggca
2101 gctttgatct caaaggattt gattgatcgg cttggtatca cggccgccct
2151 agtcaacaac ggtgacgaca atgtgctaat ctgctcggtg gatgatgagg
2201 cagtggtagt ggagcacttg tacagtcatt ttttagacta tgggttcgag
2251 gtcgtagccg aggcaccgaa atacatcact gaacaagttg agttttgtca
2301 gatgcaacca gttttcgacg ggacgcaata tattatggtc cggaatcctg
2351 cagtcagcat gagtaaagat agtcactcca tcacaccgtt ctacaccccc
2401 aacaccatga agaaatggat ccgggctgta ggcgagtgtg gactttctct
2451 caccgggggc atacccatta aacagtcata ttacaaatgc ttcatcagaa
2501 acggcgctga caaggggaag atacacacta gtagagaatt cgcgagcgga
2551 tttcaagcac tctcaaaact ctcgacgcgg aaggaaagag acatcagtac
2601 ccaatcgagg tattccttct accttgcgtt cgggtacact ccggacgagc
2651 aggtggctat ggaaaattac ttcgacaagc tggtgatcga tcccaacttc
2701 tccgactcgg gatctccggc aagagcttcc gaatgtctac tcctccaact
2751 aatccccaaa cagccgacga cacactcgca caagcgccca aacaagatcg
2801 ccaagcaacc cgcgccgcaa gactcaacgt gggagccggt atcgctcgca
2851 gaagtgcaga cgctgctgcc actcgggacg acaccgcatc tgcaagcttc
2901 gtgatcatcg cggagagggt ggacgtcact aacaacttca acttcggata
2951 aacctggcta ccggcacttg ccactgccca gacaatccct ttgtctggcc
3001 attggttacg gttgtcctca tccttttaat catcatagtt gctagtgtca
3051 ccagcacagg gcctgtcata attccgccct cacacaacac cacctatcac
3101 cacgaaaagt accagaacat agaggtacag aaatgaatgg aggcaatacc
3151 tctaaccgaa ggggacgtgg caaggcatta caaagacgga ctaataagcc
3201 tcctagaagt aggtccatcg agcgtgctcg cccattggcc tatggccaag
3251 ctgtgggccc gtcacccccc cggacagtgg cttatcgacg aggccggcag
3301 gtcaataccc agccggaaat catacttcgc atcactgcca agacgaccga
3351 taactacacg actgtgccca tcatacctgc gctcttgttc gaccccagca
3401 cacaacctgg atatggggga cgagctcagt atatggccgg tttatctcag
3451 ctccactctc aacatgagtg gaggcggttg cagttcacct ggatacccag
3501 ctgtgccacg gttacaccgg gaaatgtggt tctaaagttc ttcccgaact
3551 acaggacccc tcttcccaca gtgctcgagg atcttatgga cacctcgtcc
3601 ttgaccttca gcccatatga gaagcacacc ttttcggtgg ctggacgcat
3651 tagtggccta aaatacaaca tcggggccac tgcgtttctt gcactatccg
3701 atgaagacaa aggcgactat agcatcggaa ggctcgtcat cggaacgacg
3751 agtcaagtgt cggcggtctc cctaggtatc atacaaatgg tacccgacgt
3801 ggaattctca ggaccggtca ccactcccgt ggcaccgaca cccgccgcta
3851 ctgcggctgc gccagcctaa cctcctaggc tatacgaggt tagagtcgac
3901 ctgttaaaca gactcacctc gggcacgcgc tgaaagtgcc cgttggaagg
3951 attgcgatgg gccagtattc ctactgtacc agagaacgtg tcatcagggg
4001 atgaccatgt ccaccttgcc gggtgccctc ggacctatgt ccgtgacatg
4051 gcgtgacgct agtaatggtg ctatggaaga aacacctaac cctccaagca
4101 aaaccccaca ggaaactgtg ggggggcggc tatggaggga ttcgccaatc
4151 tcatctgaga agattggggt acctccatga gaggacccac ccccgccc