Sequence of DPV Cocksfoot mild mosaic virus
Cocksfoot mild mosaic virus isolate Scotland, complete genome.
ACC No: EU081018
Dated: 2009-09-22 | Length: 4198 | CRC: 1887809518
ID EU081018; SV 1; linear; genomic RNA; STD; VRL; 4198 BP. XX AC EU081018; XX DT 02-AUG-2008 (Rel. 96, Created) DT 22-SEP-2009 (Rel. 102, Last updated, Version 2) XX DE Cocksfoot mild mosaic virus isolate Scotland, complete genome. XX KW . XX OS Cocksfoot mild mosaic virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus. XX RN [1] RP 1-4198 RX PUBMED; 19693646. RA Ziegler A., Cowan G., Torrance L.; RT "Comparative sequence analysis and serological and infectivity studies RT indicate that cocksfoot mild mosaic virus is a member of the genus RT Panicovirus"; RL Arch. Virol. 154(9):1545-1549(2009). XX RN [2] RP 1-4198 RA Ziegler A., Cowan G.H., Torrance L.; RT ; RL Submitted (03-AUG-2007) to the EMBL/GenBank/DDBJ databases. RL Plant Pathology, Scottish Crop Research Institute, Invergowrie, Dundee, RL Scotland DD2 5DA, UK XX FH Key Location/Qualifiers FH FT source 1. .4198 FT /organism="Cocksfoot mild mosaic virus" FT /host="Phleum pratense (timothy grass)" FT /isolate="Scotland" FT /mol_type="genomic RNA" FT /country="United Kingdom:Scotland" FT /db_xref="taxon:479060" FT CDS 100. .2904 FT /codon_start=1 FT /transl_except=(pos:1186. .1188,aa:OTHER) FT /product="p106" FT /note="polymerase readthrough" FT /db_xref="GOA:B4XRZ5" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:B4XRZ5" FT /protein_id="ABW74550.1" FT /translation="MEFFSSALTRLDSTKAATLDWSKFHALFHLCPRAAYAWLKIQLGS FT SILGDLVSFLSRAARALCYLPVAVQEIARSLCERYNAASARAGDAFFYSRLFDTARANR FT WSYLDDSSPPDMGASTVSWVTKVDPLRLPRRALSTVGAGLALYGGYRTLKFLWNMWKFQ FT RRQDAIHSAKTRTQFLEKEYQEVRACMEEMGRAALRTRMEDCILKDVITPEEKDEEGNV FT VQKEVSQMIIKLYGKFVRQLVALAKVEFNGVPKNTEANQLAVWRFMYRCCEKRGLNALD FT ANRALSSALPLVFLPSTYDHNMAITMTCEDTVQTLQRYRDAFAQKSSLHRLLDNPLSGQ FT AWKEWANTILYGDQATGLHFAKXGGIEKWQGVQCKRTRVRHPRLRCHFKDTDHKVSHIH FT RVAGMGDQYTFGLFNNSAGNLERGLAERVFCVKNPQCVHGLDDEFIPTPQPIPGHFRRL FT NKYRKDIIRHVGRKGPIYYEKFLAYYTGPKLVTYSKAVDSLSEMAVRKEDARLKTFVKA FT EKLNLTLKPDPCPRVIQPRDPRYNVEMGRYLKHIEHPIYAAIDKMFGGKTIFKGMSVEA FT MGHEIHKKMRQFPRPCAIGFDASRFDQHVSVEALRYEHSIYKKIHGYPELLNLLCEWQI FT HNDGTAYAKDGFFKYSVNGCRMNTSLGNCILAALISKDLIDRLGITAALVNNGDDNVLI FT CSVDDEAVVVEHLYSHFLDYGFEVVAEAPKYITEQVEFCQMQPVFDGTQYIMVRNPAVS FT MSKDSHSITPFYTPNTMKKWIRAVGECGLSLTGGIPIKQSYYKCFIRNGADKGKIHTSR FT EFASGFQALSKLSTRKERDISTQSRYSFYLAFGYTPDEQVAMENYFDKLVIDPNFSDSG FT SPARASECLLLQLIPKQPTTHSHKRPNKIAKQPAPQDSTWEPVSLAEVQTLLPLGTTPH FT LQAS" FT CDS 100. .1188 FT /codon_start=1 FT /product="p41" FT /note="polymerase" FT /db_xref="UniProtKB/TrEMBL:B4XRZ6" FT /protein_id="ABW74549.1" FT /translation="MEFFSSALTRLDSTKAATLDWSKFHALFHLCPRAAYAWLKIQLGS FT SILGDLVSFLSRAARALCYLPVAVQEIARSLCERYNAASARAGDAFFYSRLFDTARANR FT WSYLDDSSPPDMGASTVSWVTKVDPLRLPRRALSTVGAGLALYGGYRTLKFLWNMWKFQ FT RRQDAIHSAKTRTQFLEKEYQEVRACMEEMGRAALRTRMEDCILKDVITPEEKDEEGNV FT VQKEVSQMIIKLYGKFVRQLVALAKVEFNGVPKNTEANQLAVWRFMYRCCEKRGLNALD FT ANRALSSALPLVFLPSTYDHNMAITMTCEDTVQTLQRYRDAFAQKSSLHRLLDNPLSGQ FT AWKEWANTILYGDQATGLHFAK" FT CDS 2733. .2951 FT /codon_start=1 FT /product="p8" FT /note="possible movement protein" FT /db_xref="GOA:B4XRZ7" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:B4XRZ7" FT /protein_id="ABW74551.1" FT /translation="MSTPPTNPQTADDTLAQAPKQDRQATRAARLNVGAGIARRSADAA FT ATRDDTASASFVIIAERVDVTNNFNFG" FT CDS 2954. .3136 FT /codon_start=1 FT /product="p6.8" FT /note="possible movement protein" FT /db_xref="UniProtKB/TrEMBL:B4XRZ8" FT /protein_id="ABW74552.1" FT /translation="MATGTCHCPDNPFVWPLVTVVLILLIIIVASVTSTGPVIIPPSHN FT TTYHHEKYQNIEVQK" FT CDS 3133. .3870 FT /codon_start=1 FT /product="p26" FT /note="coat protein" FT /db_xref="GOA:B4XRZ9" FT /db_xref="InterPro:IPR000937" FT /db_xref="UniProtKB/TrEMBL:B4XRZ9" FT /protein_id="ABW74553.1" FT /translation="MNGGNTSNRRGRGKALQRRTNKPPRSRSIERARPLAYGQAVGPSP FT PRTVAYRRGRQVNTQPEIILRITAKTTDNYTTVPIIPALLFDPSTQPGYGGRAQYMAGL FT SQLHSQHEWRRLQFTWIPSCATVTPGNVVLKFFPNYRTPLPTVLEDLMDTSSLTFSPYE FT KHTFSVAGRISGLKYNIGATAFLALSDEDKGDYSIGRLVIGTTSQVSAVSLGIIQMVPD FT VEFSGPVTTPVAPTPAATAAAPA" FT CDS 3137. .3535 FT /codon_start=1 FT /product="p15" FT /note="unknown function" FT /db_xref="UniProtKB/TrEMBL:B4XS00" FT /protein_id="ABW74554.1" FT /translation="MEAIPLTEGDVARHYKDGLISLLEVGPSSVLAHWPMAKLWARHPP FT GQWLIDEAGRSIPSRKSYFASLPRRPITTRLCPSYLRSCSTPAHNLDMGDELSIWPVYL FT SSTLNMSGGGCSSPGYPAVPRLHREMWF" XX SQ Sequence 4198 BP; 1086 A; 1185 C; 1053 G; 874 T; 0 other; eu081018 Length: 4198 22-SEP-2009 Type: N Check: 8474 .. 1 gggaactcgg caaaattccc gttcgcgtac aacacgcgtg ctcgcggcag 51 gcactcaact tgtgcatcag cggcgctaaa cgtacacagc gtattgccca 101 tggaattctt ctcctccgcc ctcaccaggc tcgacagtac caaggcggca 151 accttggact ggtccaaatt ccatgccctc ttccacctct gcccccgtgc 201 tgcttacgct tggctcaaaa tccaactcgg gtcgtcaatc cttggcgact 251 tggtgtcttt cttgtctcga gctgcacgcg ccctctgcta cctacctgtg 301 gcggttcaag aaatagcccg gtctctatgc gagagataca acgccgccag 351 tgctcgcgct ggggacgcgt tcttctacag ccggctgttc gacactgcta 401 gagccaacag gtggagctac ctagacgaca gtagtccccc cgacatgggc 451 gcctctactg tgtcctgggt caccaaggtg gaccctctga gattgccgcg 501 tcgggcgctc tcaacggtcg gagctgggct agccctttac gggggctaca 551 gaacgctcaa gttcctgtgg aacatgtgga agttccagag aagacaggat 601 gccatccact cggcaaagac ccgcacccaa ttcctggaaa aggaatacca 651 ggaggtccgg gcgtgcatgg aagaaatggg gcgcgctgcc ctacgtaccc 701 ggatggaaga ctgcatcctt aaagacgtca tcactcctga ggaaaaagac 751 gaagaaggga acgtggtaca aaaggaggta tcgcagatga taatcaagct 801 ctacggcaag tttgtgaggc aactcgtcgc cctcgcaaag gttgaattca 851 acggtgttcc aaagaacaca gaagccaacc aacttgcagt ctggaggttc 901 atgtacagat gctgcgagaa gagggggcta aacgccttag acgcgaacag 951 ggccctttcc agcgccctgc cgcttgtatt cctcccctcg acctacgacc 1001 acaacatggc cataacgatg acgtgcgaag acactgtgca gaccctgcaa 1051 agatataggg acgcattcgc acagaaaagt agcctccaca ggctactcga 1101 caaccctctc tctgggcagg catggaaaga atgggctaac accattctat 1151 atggagacca ggcaactggt ctccatttcg ccaaataggg gggtatcgaa 1201 aagtggcagg gggtgcagtg taaacgtaca cgcgtccggc accccagact 1251 cagatgccac tttaaagata cggaccacaa agttagccac atacacaggg 1301 ttgccgggat gggcgaccag tacacttttg ggctcttcaa caacagtgcg 1351 gggaacttag agcgtgggct cgcagaacgg gtattttgcg tcaagaatcc 1401 gcaatgtgta cacggattgg acgatgaatt cataccaacc ccacaaccca 1451 tcccggggca cttccgtcgc ctcaacaagt accgcaaaga tattataaga 1501 cacgtcggcc gcaagggccc catttactat gagaagttcc tggcttacta 1551 cactggcccc aagctggtga cttatagtaa ggctgttgat tccctctcgg 1601 aaatggccgt ccggaaagaa gacgctcgtc tgaaaacctt tgttaaagcg 1651 gaaaaactca acctcaccct taagcctgac ccctgccccc gcgttatcca 1701 accgcgcgac ccgcgctaca atgtggaaat gggtaggtac ctcaagcaca 1751 ttgaacatcc catctacgca gccattgaca agatgtttgg tgggaaaacc 1801 atatttaagg gtatgagcgt ggaagctatg ggacacgaga tccacaagaa 1851 aatgcgccaa tttccaagac catgcgcaat tggattcgat gcttccagat 1901 ttgaccaaca cgtttctgtt gaagcactcc ggtatgagca ctcaatatac 1951 aagaaaatac acggatatcc tgaactgttg aaccttctct gtgaatggca 2001 gatccacaac gatggaactg cctatgcaaa agatggcttc ttcaaatact 2051 ccgtgaatgg ttgtagaatg aacacgtccc tcgggaattg tattctggca 2101 gctttgatct caaaggattt gattgatcgg cttggtatca cggccgccct 2151 agtcaacaac ggtgacgaca atgtgctaat ctgctcggtg gatgatgagg 2201 cagtggtagt ggagcacttg tacagtcatt ttttagacta tgggttcgag 2251 gtcgtagccg aggcaccgaa atacatcact gaacaagttg agttttgtca 2301 gatgcaacca gttttcgacg ggacgcaata tattatggtc cggaatcctg 2351 cagtcagcat gagtaaagat agtcactcca tcacaccgtt ctacaccccc 2401 aacaccatga agaaatggat ccgggctgta ggcgagtgtg gactttctct 2451 caccgggggc atacccatta aacagtcata ttacaaatgc ttcatcagaa 2501 acggcgctga caaggggaag atacacacta gtagagaatt cgcgagcgga 2551 tttcaagcac tctcaaaact ctcgacgcgg aaggaaagag acatcagtac 2601 ccaatcgagg tattccttct accttgcgtt cgggtacact ccggacgagc 2651 aggtggctat ggaaaattac ttcgacaagc tggtgatcga tcccaacttc 2701 tccgactcgg gatctccggc aagagcttcc gaatgtctac tcctccaact 2751 aatccccaaa cagccgacga cacactcgca caagcgccca aacaagatcg 2801 ccaagcaacc cgcgccgcaa gactcaacgt gggagccggt atcgctcgca 2851 gaagtgcaga cgctgctgcc actcgggacg acaccgcatc tgcaagcttc 2901 gtgatcatcg cggagagggt ggacgtcact aacaacttca acttcggata 2951 aacctggcta ccggcacttg ccactgccca gacaatccct ttgtctggcc 3001 attggttacg gttgtcctca tccttttaat catcatagtt gctagtgtca 3051 ccagcacagg gcctgtcata attccgccct cacacaacac cacctatcac 3101 cacgaaaagt accagaacat agaggtacag aaatgaatgg aggcaatacc 3151 tctaaccgaa ggggacgtgg caaggcatta caaagacgga ctaataagcc 3201 tcctagaagt aggtccatcg agcgtgctcg cccattggcc tatggccaag 3251 ctgtgggccc gtcacccccc cggacagtgg cttatcgacg aggccggcag 3301 gtcaataccc agccggaaat catacttcgc atcactgcca agacgaccga 3351 taactacacg actgtgccca tcatacctgc gctcttgttc gaccccagca 3401 cacaacctgg atatggggga cgagctcagt atatggccgg tttatctcag 3451 ctccactctc aacatgagtg gaggcggttg cagttcacct ggatacccag 3501 ctgtgccacg gttacaccgg gaaatgtggt tctaaagttc ttcccgaact 3551 acaggacccc tcttcccaca gtgctcgagg atcttatgga cacctcgtcc 3601 ttgaccttca gcccatatga gaagcacacc ttttcggtgg ctggacgcat 3651 tagtggccta aaatacaaca tcggggccac tgcgtttctt gcactatccg 3701 atgaagacaa aggcgactat agcatcggaa ggctcgtcat cggaacgacg 3751 agtcaagtgt cggcggtctc cctaggtatc atacaaatgg tacccgacgt 3801 ggaattctca ggaccggtca ccactcccgt ggcaccgaca cccgccgcta 3851 ctgcggctgc gccagcctaa cctcctaggc tatacgaggt tagagtcgac 3901 ctgttaaaca gactcacctc gggcacgcgc tgaaagtgcc cgttggaagg 3951 attgcgatgg gccagtattc ctactgtacc agagaacgtg tcatcagggg 4001 atgaccatgt ccaccttgcc gggtgccctc ggacctatgt ccgtgacatg 4051 gcgtgacgct agtaatggtg ctatggaaga aacacctaac cctccaagca 4101 aaaccccaca ggaaactgtg ggggggcggc tatggaggga ttcgccaatc 4151 tcatctgaga agattggggt acctccatga gaggacccac ccccgccc