Sequence of DPV Opium poppy mosaic virus

Opium poppy mosaic virus hypothetical protein gene, partial cds; RNA-dependent RNA polymerase-like gene, complete sequence; and putative phloem RNA movement protein and putative cell-to-cell movement protein genes, partial cds.

ACC No: EU151723

Dated: 2011-07-07 | Length: 3270 | CRC: 1084265449

                
ID   EU151723; SV 2; linear; genomic RNA; STD; VRL; 3270 BP.
XX
AC   EU151723;
XX
DT   02-OCT-2007 (Rel. 93, Created)
DT   07-JUL-2011 (Rel. 109, Last updated, Version 2)
XX
DE   Opium poppy mosaic virus hypothetical protein gene, partial cds;
DE   RNA-dependent RNA polymerase-like gene, complete sequence; and putative
DE   phloem RNA movement protein and putative cell-to-cell movement protein
DE   genes, partial cds.
XX
KW   .
XX
OS   Opium poppy mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus;
OC   unclassified Umbravirus.
XX
RN   [1]
RP   1-3270
RA   Tang J., Wei T., Ochoa-Corona F., Clover G.;
RT   "Identification and characterization of Opium poppies mosaic virus: a novel
RT   member of Umbravirus";
RL   Unpublished.
XX
RN   [2]
RP   1-3270
RA   Tang J., Wei T., Ochoa-Corona F., Clover G.;
RT   ;
RL   Submitted (12-SEP-2007) to the INSDC.
RL   Investigation and Diagnostic Centres, Biosecurity, Ministry of Agriculture
RL   and Forestry, 231 Morrin Road, St Johns, PO box 2095, Auckland 1140, New
RL   Zealand
XX
CC   On Jul 6, 2011 this sequence version replaced gi:157696066.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .3270
FT                   /organism="Opium poppy mosaic virus"
FT                   /host="Papaver somniferum (opium poppy)"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand"
FT                   /note="PCR_primers=fwd_name: OPMVf1, rev_name: OPMVr1;
FT                   PCR_primers=fwd_name: OPMVf2, rev_name: OPMVr2"
FT                   /db_xref="taxon:473784"
FT   CDS             <1. .903
FT                   /codon_start=1
FT                   /product="hypothetical protein"
FT                   /note="ORF1"
FT                   /db_xref="GOA:A8HB26"
FT                   /db_xref="InterPro:IPR002166"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A8HB26"
FT                   /protein_id="ABV66257.2"
FT                   /translation="NYKDNRNIKSRNECNVAFDEDWGTLITQKRMQLEAERQYRDWYNA
FT                   ASPTTCVMPPLPDAELMEEARVSKVKAALEQPKQKSTEAAEPVPNSVLDAIEEEKALLE
FT                   LRALPSVAENRRFEALKPQAVKLDAVPQCTDVGRERWAIIPYTGGPRVLQEDEVLPRAP
FT                   AVICLSDAPVPTSKILPRFNACFDTIQRVTKWRKVARDDFLEEAARVDPQYNNVQVPGE
FT                   VMRSMNAQSVAMELRARYGMQPCTAANLQLGNRVAREILDRQCQATREQVYYYGHLATT
FT                   MWFQPTLVDLALRAGAKDF"
FT   misc_feature    810. .2555
FT                   /note="similar to RNA-dependent RNA polymerase; ORF2"
FT   CDS             2724. .>3270
FT                   /codon_start=1
FT                   /product="putative phloem RNA movement protein"
FT                   /note="ORF3"
FT                   /protein_id="AEJ80234.1"
FT                   /translation="MADGYSMATTPNVNSCGKSRFQGRIVERVVRRGDSKGTRRDKPRN
FT                   PHPPQSREEGGRNPSLAPQDPGKNRRCSKKTAHHPPHRRATIHRKDSSGVHPPRTRRRR
FT                   RGGANLGPRQHVTPSKQRWGTCELPAERRAEIDGLLSPILNTANMQGWGYPEVLLYSIR
FT                   VLRGELRFWSKPVQPAHNV"
FT   CDS             2731. .>3270
FT                   /codon_start=1
FT                   /product="putative cell-to-cell movement protein"
FT                   /note="ORF4"
FT                   /protein_id="AEJ80235.1"
FT                   /translation="MGIAWRLHQMSTAVAKADSKEELLNALYGEVTVKELEETNLGILT
FT                   PHRAERKVVATPLLPPKTQGRIAGVLRKLRTTRHTGGLLFIEKIVVVFTPHVPDDVVGE
FT                   VQIWVHDNMLPHLNSVGERVSFPLSGGPRLMAYYPPYSIPLTCRVGDTPRCFYIVSEYS
FT                   GVNFASGASPFSLHIMW"
XX
SQ   Sequence 3270 BP; 889 A; 817 C; 890 G; 674 T; 0 other;

eu151723 Length: 3270  07-JUL-2011  Type: N  Check: 7308  ..

       1  aattacaaag acaaccgcaa catcaaaagc agaaatgagt gcaatgtagc
      51  tttcgacgag gactggggaa ctctaataac ccagaaacgc atgcaactgg
     101  aggccgagcg tcagtaccgt gactggtaca acgctgcgag tcccaccact
     151  tgcgttatgc caccactccc ggatgcagag cttatggaag aggcccgggt
     201  tagcaaggtg aaggccgccc tggaacagcc caaacaaaaa tccacagagg
     251  cggcagagcc agtaccaaac tctgtactgg atgccataga ggaggagaaa
     301  gccctcctgg agttgcgtgc gctaccctcc gtagctgaaa acaggaggtt
     351  tgaggcgctg aaaccccaag cagtcaagct tgatgccgtt ccacaatgca
     401  ccgatgtggg acgagagagg tgggccataa ttccctacac gggtgggcca
     451  cgggtgttac aggaggatga ggttctcccc cgtgcaccag ccgtcatttg
     501  cctcagtgac gcacccgtcc ccacgtctaa aattcttcca aggttcaatg
     551  cctgctttga cacgattcag cgtgtaacaa agtggaggaa ggtcgcaagg
     601  gacgacttcc tcgaagaggc ggcgcgggtt gacccccagt ataacaatgt
     651  gcaggttcct ggggaggtca tgaggagcat gaatgctcaa agtgtggcga
     701  tggagctacg tgcccgctac ggcatgcaac catgcacagc tgccaacttg
     751  cagctcggga atcgggtggc tcgtgaaata ctggacagac aatgccaggc
     801  cacccgtgaa caggtgtatt actatggaca cctggccaca accatgtggt
     851  tccaacccac cttagtggac ctagccctca gggctggggc caaggatttt
     901  tagttgggga tgtgtacgct cgtgcggggt ttgagactaa ggtcgaaaca
     951  tcattacacc ccgcaatacg agtgatacga gcggcgcgtc cccgtgccgt
    1001  agaaagagtg tcgtaccaga tagacgtagt acgaccctgc gctgatttcg
    1051  gtgtccacaa caactccctt aacaatctca ttaggggagt caatgagagg
    1101  gtgttcttca cagaccacaa aaggtcatca cccaccaagc cactaccagg
    1151  cgcgtttgac gagatatgtg tatcagactt gaagtcattc aaggtcacgc
    1201  cctggaccat ggagcaggta gtagattcat acgcgggttc acagaagaca
    1251  cgctaccaaa atgctcttga gagtttgaat acccaaccgc ttacccgatc
    1301  ggacgcaaga gttaagacgt tcgtcaaggc cgagaagatc aatttcaccg
    1351  cgaaaccaga tcctgcaccg agagtgatac aacctaggga tcctaggttc
    1401  aacctctgct tcgccaagta cacgaagcca ctcgagccaa tgttgtataa
    1451  gcaactgggt aagttgtata ggtacccctg catcgcaaag gggttcaacg
    1501  cagtagaaac cggagagata atagcaaaga aatgggcaat gttcaaaaat
    1551  ccggtttgtg tggggttaga cgccagcaga tttgaccagc atgtgtcagt
    1601  tgaagcactg cggttcaccc acaaggttta caagagattc gtcaaagggc
    1651  atgaggtcaa taagcttcta tcgtggatgt acacgaacca tgctctaggg
    1701  tccgcaaagg atggatttgt caagtacgag gtcaccggct gtcgaatgag
    1751  tggtgatatg gacacagccc tcggaaactg cacccttatg gtgttgatga
    1801  caagacatct atgcaagtct cttggtattg agcacgagat tatgaacaac
    1851  ggtgacgatt gtatcataat catggataag tcgaagctca ccttactgca
    1901  agaaaacgta gtaccatact acgaaaggtt gggattcaag atgaaggtgg
    1951  aggctccagt ctaccacctc gaacgagttg atttttgcca gacccgcccg
    2001  gtgtacgatg ggcgtaagtg gagaatggtc aggcatatat ccagcatagc
    2051  caaagattgc tgcacagtga tcaactggga gcagctcgcg ccctggtggt
    2101  gcgctattgg tacttgcgga ttagctgtcg ccggtggaat gcccatccac
    2151  aactcgttct taaagtggct gaagcgctcc ggaggtgaag aaggtggtgt
    2201  aagatcccac gccctctgga agaatgaagg attaagctgg tatcgtatgg
    2251  gtttagacct gtcgcacgag gacacggtca ctgatgaagc gagacttagc
    2301  ttccagactg cctttggtat atcaccagag atgcaagtag ccctggagca
    2351  aatttatgat aatttgcccg ccccaacagt tgacggacgt gattaccgca
    2401  cgaggggaat acgaatgtgt aacattgtga gtgagcttcc atcacgtcat
    2451  ttcaaccatt attttgagga cgtgcccact tacaccagca tggaatcctc
    2501  cgctacccct gggaacctca actttgaacc agggttgttg tggaacttca
    2551  catagtgaag cgctcctgaa tgccgacagg agatgaacgt actaggcaag
    2601  tgggaatgct agccgggtta gtgttgcaat cgccggagca taagtcacta
    2651  cagaggggga agtcccgaca acgccattga atcagctacc ttgtgtgccc
    2701  acccagacgg ccagccgcgg acaatggccg atgggtatag catggcgact
    2751  acaccaaatg tcaacagctg tggcaaaagc agattccaag gaagaattgt
    2801  tgaacgcgtt gtacggagag gtgacagtaa aggaactaga agagacaaac
    2851  ctaggaatcc tcacccccca cagagcagag aggaaggtgg tcgcaacccc
    2901  tctcttgccc cccaagaccc agggaagaat cgcaggtgtt ctaagaaaac
    2951  tgcgcaccac ccgccacaca ggagggctac tattcatcga aaagatagta
    3001  gtggtgttca ccccccacgt accagacgac gtcgtagggg aggtgcaaat
    3051  ttgggtccac gacaacatgt taccccatct aaacagcgtt ggggaacgtg
    3101  tgagcttccc gctgagcgga gggccgagat tgatggccta ctatccccca
    3151  tactcaatac cgctaacatg cagggttggg gataccccga ggtgcttcta
    3201  tatagtatca gagtactcag gggtgaactt cgcttctgga gcaagcccgt
    3251  tcagcctgca cataatgtgg