Sequence of DPV Paralichthys olivaceus birnavirus
Paralichthys olivaceus birnavirus segment A, complete sequence.
ACC No: EU161285
Dated: 2008-05-29 | Length: 3091 | CRC: 2113981416
ID EU161285; SV 1; linear; genomic RNA; STD; VRL; 3091 BP.
XX
AC EU161285;
XX
DT 15-OCT-2007 (Rel. 93, Created)
DT 29-MAY-2008 (Rel. 95, Last updated, Version 2)
XX
DE Paralichthys olivaceus birnavirus segment A, complete sequence.
XX
KW .
XX
OS Paralichthys olivaceus birnavirus
OC Viruses; dsRNA viruses; Birnaviridae; Aquabirnavirus;
OC unclassified Aquabirnavirus.
XX
RN [1]
RP 1-3091
RX PUBMED; 18398563.
RA Zhao Z., Ke F., Li Z., Gui J., Zhang Q.;
RT "Isolation, characterization and genome sequence of a birnavirus strain
RT from flounder Paralichthys olivaceus in China";
RL Arch. Virol. 153(6):1143-1148(2008).
XX
RN [2]
RP 1-3091
RA Zhao Z., Ke F., Zhang Q.Y.;
RT ;
RL Submitted (18-SEP-2007) to the EMBL/GenBank/DDBJ databases.
RL State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of
RL Hydrobiology, Chinese Academy of Sciences, 7 Donghu South Road, Wuhan,
RL Hubei 430072, China
XX
FH Key Location/Qualifiers
FH
FT source 1. .3091
FT /organism="Paralichthys olivaceus birnavirus"
FT /segment="A"
FT /specific_host="Paralichthys olivaceus (Japanese flounder)"
FT /mol_type="genomic RNA"
FT /country="China"
FT /db_xref="taxon:475879"
FT gene 112. .513
FT /gene="VP5"
FT CDS 112. .513
FT /codon_start=1
FT /gene="VP5"
FT /product="nonstructural protein"
FT /note="similar to Bcl-2"
FT /db_xref="InterPro:IPR004284"
FT /db_xref="UniProtKB/TrEMBL:A8IFA1"
FT /protein_id="ABW07820.1"
FT /translation="MNHEHNKGNRNLLEIHYASREWSSKHSGRHNRETHTKTRDLVIQL
FT RGLRLRKWASCLLPWSSWIQSRCPLQVESEPDGTGIRPVAGNITGPEEGIQLREAGLTE
FT IRRPELNFTCWSVCPEWDPERRDLRRKSV"
FT CDS 119. .3037
FT /codon_start=1
FT /product="polyprotein"
FT /note="contains major structural protein 2 (VP2),
FT non-structural protein (VP4), and minor structural protein
FT 3 (VP3)"
FT /db_xref="GOA:A8IFA7"
FT /db_xref="InterPro:IPR002662"
FT /db_xref="InterPro:IPR002663"
FT /db_xref="InterPro:IPR002664"
FT /db_xref="UniProtKB/TrEMBL:A8IFA7"
FT /protein_id="ABW07821.1"
FT /translation="MNTTKATATYLRSIMLPENGPASIPDDITERHILKQETSSYNLEV
FT SDSGSGLLVCFPGAPGSRVGAHYKWNQNQTELEFDQWLETSQDLKKAFNYGRLVSRKYD
FT VQSSTLPAGLYALNGTLNAATFEGSLSEVESFSYNSLTSLTTNPQDKVNNQPVTKGVTV
FT LNLPTGFDKPYVRLEDETPQGPQSTNGARMRCTAAIAPRRYEIDLPSARLPTVPATGTL
FT TTIYEGNADIVNSTTVIGDISFRLEQDPPNDTKYDFQLDFLGLDNNVPVVSITSSTLAT
FT TDNYRGVSVKFTQSIPTETITKPITRVKLSYKINQQTAIGNAATLGPLGPSSVSFSSGN
FT GNVPGVLRPITLVAYEKMTPQSILTVAGVSNYELIPNPELLKNMVTKYGKYDPEGLNYA
FT KMILSHREELDIRTVWRTEEYKERTRAFNEITDFSSDLPTSKAWGWRDIVRGIRKVAAP
FT VLSTLFPMAAPLIGAADQFIGDLTKTNAAGGRYLTHAAGGRYTDVMDSWASGSDTGRFS
FT RNLKDRLESNNYEEIELPPPTKGVIIPVVHTVESAPGEAFGSLLVIIPGAYPELLDPNQ
FT QVLSHFKNDTGCVWGIREDIPFEGDDICYTALPLKEIKKNGNIVVEKVFAGPAMGPSCQ
FT LGLSLLVNDIDKGVPRMVFTGEIADDEETIVPICGVNIKAIAAHEHGLPLVGCQPGVDE
FT VVANTSLASHLIQSGALPVQKTQGASRRIKYLGELMRTTASGMDEELQKLLHATMARAK
FT EVKDAEVFKLLKLMSWTRKNGLTDHMYEWSKEDPEAVKFGKLISTPPKHQEKPKGPDQH
FT TAQEAKAVRISLDAVKAGADFASPDWIAENRYRGPSPGQFKYYVITGSVPDPRDEYDDY
FT VRKPITRPTDMDKIRRLANSVYGLPHQEPAPEEFYQAVVEIFAENGGRGPDQEQMQDLR
FT DLARQMKRRPRPAETRRQNRAPPRAAPSGSSRFTPSGDNGEV"
XX
SQ Sequence 3091 BP; 913 A; 906 C; 763 G; 509 T; 0 other;
eu161285 Length: 3091 29-MAY-2008 Type: N Check: 9013 ..
1 ggaaagagtg tttcaacgtt agtggtaacc cacgagcgga gagctcctac
51 ggaggagctc tccgtcgatg gcgaaagccc tttctaacaa acaacctaca
101 attctatcta catgaatcat gaacacaaca aaggcaaccg caacttactt
151 gagatccatt atgcttcccg agaatggtcc agcaagcatt ccggacgaca
201 taacagagag acacatacta aaacaagaga cctcgtcata caacttagag
251 gtctcagact ccggaagtgg gcttcttgtc tgcttccctg gagctcctgg
301 atccagagtc ggtgcccact acaagtggaa tcagaaccag acggaactgg
351 aattcgacca gtggctggaa acatcacagg acctgaagaa ggcattcaac
401 tacgggaggc tggtctcacg gaaatacgac gtccagagct caactttacc
451 tgctggtctg tatgccctga atgggaccct gaacgccgcg accttcgaag
501 gaagtctgtc tgaagtggag agtttctcct acaacagtct gacgtccctc
551 accacgaacc cccaggacaa agtgaacaac cagccagtca ccaaaggagt
601 gacagtccta aacctaccaa cagggttcga caagccatac gtccgcctgg
651 aggacgagac cccacaaggg ccccagtcaa cgaacggcgc ccggatgagg
701 tgcacagctg caattgcacc acgaaggtat gaaattgacc tcccatccgc
751 acgcctcccc acagtaccag cgactgggac cctcacaaca atctatgaag
801 ggaacgccga cattgtgaac tcaaccacag tgatcggcga catcagcttc
851 agactggaac aagacccccc gaacgacacg aagtacgact tccagctcga
901 cttcctaggc ttagacaaca acgtccccgt tgtgtcaata accagctcta
951 cgctggccac aaccgacaac tacagggggg tctcagtcaa attcacacag
1001 tcaatcccaa cagagacaat cacaaaaccc atcaccaggg tcaagctgtc
1051 ctacaaaatc aaccagcaga cagccatcgg caatgcagca acgcttggac
1101 ccctggggcc ctcatccgtc tcattctcat caggaaacgg aaacgtacct
1151 ggagtgctca ggccaataac cctagtggcc tacgagaaga tgacacccca
1201 gtcgatcctg acggtagctg gagtgtcaaa ctatgagctg atcccaaacc
1251 ccgaactcct gaagaacatg gtcacgaaat atggcaagta tgaccccgaa
1301 ggtctcaact acgccaagat gatcctgtcc caccgagagg agctagacat
1351 cagaacagtc tggagaaccg aggagtacaa ggagagaaca agagccttca
1401 atgagatcac agacttctca agtgacctcc caacctcaaa agcctggggg
1451 tggagagaca ttgtgagagg catccggaag gtggcagcac cagtgctgtc
1501 aacactcttc cccatggcgg caccactcat cggagctgcc gaccaattca
1551 tcggggacct gaccaagacc aacgcagccg gaggccgcta cctaacacat
1601 gcagcaggag gacgctacac tgacgtaatg gactcctggg ccagcggctc
1651 agacactggg aggttctcac gcaacctcaa agaccggctg gagtcaaaca
1701 actatgagga gatagaactt cctccaccaa cgaaaggagt catcatacct
1751 gtggtgcaca cagtggagag tgcacctggt gaggcctttg ggtcccttct
1801 ggtaatcatc ccaggagcat acccagaact tcttgaccca aaccagcagg
1851 tcctgtccca cttcaaaaat gacactggat gtgtctgggg catacgagaa
1901 gacattccat tcgaaggtga cgacatatgc tacaccgccc tgcctctcaa
1951 agagatcaag aagaacggaa acatcgtagt ggagaaagtc ttcgctggcc
2001 ctgcgatggg accatcctgc caactgggcc tgtcgctcct tgtcaacgac
2051 atcgacaagg gcgtacccag aatggtgttc actggagaga tcgcagacga
2101 cgaggaaacc atcgtcccca tctgcggtgt aaacatcaaa gccatcgccg
2151 cccatgaaca tgggctgcca ctcgttggct gtcaaccagg agtcgatgag
2201 gtggtggcaa acacatctct cgcctcacac ctgatccaga gcggagcact
2251 accagtgcag aaaacacaag gcgccagcag gaggatcaag tacctggggg
2301 aactaatgag aacaactgca tcagggatgg acgaagagct gcagaagctg
2351 ctgcacgcca ccatggccag agcaaaagag gtgaaagacg ccgaagtctt
2401 caaacttctc aagctgatgt cctggaccag gaagaacggg ctcaccgacc
2451 acatgtatga atggtcaaaa gaggaccctg aagcagtcaa atttggcaaa
2501 ctcatcagca caccaccaaa acaccaagag aagccaaaag gacccgacca
2551 gcacacggca caggaggcga aagctgtccg gatctcacta gatgcagtga
2601 aggcaggagc agactttgcc tccccagact ggatcgcgga gaatagatac
2651 cgcggtccat caccaggcca gttcaagtac tacgtcatca cagggagcgt
2701 cccagaccca cgagacgagt acgatgacta cgtgcgaaaa ccaataacaa
2751 gacccacgga catggacaaa atcagacgcc tagccaacag tgtctacgga
2801 cttccccacc aagaacctgc accagaggaa ttctaccaag cggtagtcga
2851 gatcttcgca gaaaatggag gacgaggacc agaccaagaa cagatgcaag
2901 acctgaggga cttggcccgg cagatgaaac gacgaccccg accagctgag
2951 acacgcaggc aaaaccgagc tccaccacgg gcggcaccca gtggaagctc
3001 acgttttacc ccctccggag ataacggaga agtgtaacag ctactctctt
3051 tcctgactga tcccctggcc tcaaccccgt cccccagggg g