Sequence of DPV Paralichthys olivaceus birnavirus
Paralichthys olivaceus birnavirus segment B, complete sequence.
ACC No: EU161286
Dated: 2008-05-29 | Length: 2780 | CRC: 1638066032
ID EU161286; SV 1; linear; genomic RNA; STD; VRL; 2780 BP.
XX
AC EU161286;
XX
DT 15-OCT-2007 (Rel. 93, Created)
DT 29-MAY-2008 (Rel. 95, Last updated, Version 2)
XX
DE Paralichthys olivaceus birnavirus segment B, complete sequence.
XX
KW .
XX
OS Paralichthys olivaceus birnavirus
OC Viruses; dsRNA viruses; Birnaviridae; Aquabirnavirus;
OC unclassified Aquabirnavirus.
XX
RN [1]
RP 1-2780
RX PUBMED; 18398563.
RA Zhao Z., Ke F., Li Z., Gui J., Zhang Q.;
RT "Isolation, characterization and genome sequence of a birnavirus strain
RT from flounder Paralichthys olivaceus in China";
RL Arch. Virol. 153(6):1143-1148(2008).
XX
RN [2]
RP 1-2780
RA Zhao Z., Ke F., Zhang Q.Y.;
RT ;
RL Submitted (18-SEP-2007) to the EMBL/GenBank/DDBJ databases.
RL State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of
RL Hydrobiology, Chinese Academy of Sciences, 7 Donghu South Road, Wuhan,
RL Hubei 430072, China
XX
FH Key Location/Qualifiers
FH
FT source 1. .2780
FT /organism="Paralichthys olivaceus birnavirus"
FT /segment="B"
FT /specific_host="Paralichthys olivaceus (Japanese flounder)"
FT /mol_type="genomic RNA"
FT /country="China"
FT /db_xref="taxon:475879"
FT gene 101. .2638
FT /gene="VP1"
FT CDS 101. .2638
FT /codon_start=1
FT /gene="VP1"
FT /product="RNA depended RNA polymerase"
FT /note="RdRp"
FT /db_xref="GOA:A8IFB1"
FT /db_xref="InterPro:IPR007098"
FT /db_xref="InterPro:IPR007100"
FT /db_xref="UniProtKB/TrEMBL:A8IFB1"
FT /protein_id="ABW07822.1"
FT /translation="MSDIFNSPQNKASILSALMKSTAGDVEDVLIPKRFRPAKDPLDSP
FT QAAAQFLKDNKYRILRPRAIPTMVELETDAALPRLRQMVDDGKLKDTVSVPEGTTAFYP
FT KYYPFHKPDHDEVGTFGAPDVTLLKQLTFFLLENDFPTGPETLRQVREAIATLQYGSGS
FT YSGQLNRLLAMKGVATGRNPNKTPKTVGYSNEQLAKLLEQTLPINPPKNEDPDLRWAPS
FT WLINYTGDQSTDKSYLPHVTVKSSAGLPYIGKTKGDTTAEALVLADSFIRDLGKAATSA
FT DPGTEVKKTITDFWYLSCGLLFPKGERYTQVDWDKKTRNIWSAPYPTHLLLSMVSSPVM
FT EESKLNITNTQTPSLYGFSPFHGGMDRIMTIIRNSLDTGEDLVMIYADNIYILQDDTWY
FT SIDLEKGEANCTPQHMQAMMYYLLTRGWTNEDGSPRYNPTWATFAMNVAPSMVVDSSCL
FT LMNLQLKTYGQGSGNAFTFLNNHLMSTIVVAEWVKAGKPNPMTKEFMDLEEKTGINFKI
FT ERELKNLREVIMEAVETAPQDGYLADGSDLPPHKPGRAVELDLLGWSAVYSRRMEMFVP
FT VLENERLIASAAYPKGLENKTLARKPGAEIAYQIVRYEAIRLVGGWNNPLLETAAKHMS
FT LDKRKRLEVKGIDVTGFLDDWNNMSEFGGDLEGITLAEPLTNQTLIDINTPLESFDPKE
FT RPETPRSPKKTLDEVTAAITSGTYKDPKSAVWRLLDQRTKLRVSTLRDQAAALRPASST
FT VDNWAEATEELAAQQQLLMKANTLLKSSLTETREALETVQSDKIIAGKSNPEKNPGNAA
FT NPVVGYGEFSEKIPLTPTQKKNAKRREKQRRNQ"
XX
SQ Sequence 2780 BP; 856 A; 795 C; 675 G; 454 T; 0 other;
eu161286 Length: 2780 29-MAY-2008 Type: N Check: 966 ..
1 ggaaacagtg ggtcaacgtt ggtggcaccc gacataccac gactgtttac
51 gtatgcacgc aagtgcccct tttaaaacct ctacatttac aactcatgat
101 atgtcggaca tattcaactc accccagaac aaggcgtcaa tcttgagtgc
151 tctcatgaaa agcacagcag gagatgtgga agacgtgcta attccaaaac
201 gcttccgacc agccaaggat ccccttgaca gtccacaagc tgcagcacag
251 ttcctaaagg acaacaagta ccgcatactt aggccgcgag ccattccaac
301 catggtcgaa ctagagacag atgccgctct gcctcgacta cgacagatgg
351 tcgacgatgg caagcttaag gacacggtaa gcgtcccaga aggaaccacc
401 gcattctatc caaaatacta cccattccac aagccagatc atgatgaagt
451 tgggacgttt ggggctccag acgtcacact tctgaaacaa ctcacattct
501 tcctactgga aaatgacttt ccaacaggcc cagagacttt acggcaagtc
551 agagaagcca tagccacgct tcagtatggc tcaggcagct actcaggaca
601 gctaaacaga ctcctggcga tgaaaggggt tgcaactgga aggaatccaa
651 acaaaactcc caagacagtg ggctacagca atgagcagct ggccaaactc
701 cttgagcaga cactaccgat caaccctcca aagaacgagg acccagacct
751 ccggtgggcc cccagctggt tgatcaacta taccggagac cagagtaccg
801 acaagtcata tctgccacat gtgactgtca agtcctcagc cggcctacca
851 tacataggca aaaccaaagg agacacgact gcagaagcgc tcgttctggc
901 tgactccttc ataagagacc tcggaaaagc cgcaacatca gctgatccag
951 ggacagaagt aaagaagacc ataacggact tctggtacct gagctgtggg
1001 ctgctattcc caaagggcga gagatacacc caagtggact gggacaagaa
1051 gacccggaac atatggagcg cgccctaccc aacacaccta ttgctatcaa
1101 tggtgtcatc accggtgatg gaggagtcca agctcaacat caccaacacc
1151 cagactccgt ccctgtacgg gttctctcca ttccatggcg ggatggacag
1201 aataatgacg atcataagaa atagtctgga cacaggagag gacctggtga
1251 tgatctacgc agacaacatc tacatactgc aagacgacac ctggtactca
1301 atcgacctag agaaaggtga ggccaactgc acaccacaac acatgcaggc
1351 catgatgtac tacctgctaa cgcgaggatg gacaaatgag gatggctcac
1401 cccgctacaa cccaacatgg gcgaccttcg ccatgaacgt tgcaccgtca
1451 atggttgtgg actcatcatg cctattgatg aacctgcagc tcaagacata
1501 cgggcaaggc agcggaaacg ccttcacctt tctcaacaac cacctaatgt
1551 caacaatcgt agttgccgag tgggtaaagg ccggaaaacc caaccccatg
1601 acaaaagagt tcatggacct cgaagagaag actgggataa acttcaagat
1651 tgagcgggaa ctcaagaacc tacgggaagt catcatggag gccgtcgaaa
1701 cagcacccca ggacggctac ctggccgatg gctcagacct cccaccacac
1751 aaacccggga gagccgtgga gctagaccta ctcggctggt ccgcggtata
1801 cagccgtcgg atggagatgt ttgtgccagt cctcgagaac gagcgactaa
1851 ttgcatcagc tgcctaccca aagggtctcg agaacaagac cctagccaga
1901 aaacccgggg ccgagatcgc ataccagata gtcaggtatg aagcgatccg
1951 cctggtaggc ggctggaaca atcccctgct agaaaccgca gcaaaacaca
2001 tgtccctaga caagagaaag cgtctagagg taaagggcat tgacgtcaca
2051 gggttcctgg atgactggaa caacatgtca gaattcgggg gtgacctcga
2101 agggataacc ctagctgaac ccctgacaaa ccaaaccctg atagacatca
2151 acacacccct tgagagcttc gacccaaaag agaggcccga aacacctcgg
2201 tcacccaaga agactctgga tgaagtaacc gctgccataa cctccgggac
2251 ttacaaggac cccaagagtg ccgtgtggag gctgctcgac cagaggacca
2301 agctaagagt aagcacgcta agagaccagg cagccgccct cagaccagca
2351 tcatccacag tggacaactg ggccgaagca acggaggaac tagcagcaca
2401 acaacagctt ctcatgaaag ccaacacgct gctcaagagc agtctcacag
2451 agaccagaga agcgctggag accgtccagt cagacaaaat catcgctgga
2501 aaatcgaacc ccgagaagaa ccccggcaac gcagccaacc ccgtggttgg
2551 ctacggcgaa ttcagcgaaa agattcctct aacacccacg cagaagaaga
2601 acgccaagcg aagggagaaa cagaggcgca accaataaga agacaaccgg
2651 gaagtatccg aaatgaccta gctggactca tatgcaagct ccgcgccgca
2701 cggcaggcta aacaaaagta gtgaccctga gagtgccacc aacatgaccc
2751 tagataacat ccggttccgc cagggacccc