Sequence of DPV Polygonum ringspot virus
Polygonum ringspot tospovirus NSm (NSm) and glycoprotein G1/G2 precursor (G1/G2) genes, complete cds.
ACC No: EU271753
Dated: 2008-12-16 | Length: 4689 | CRC: -1868793055
ID EU271753; SV 1; linear; genomic RNA; STD; VRL; 4689 BP.
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AC EU271753;
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DT 05-DEC-2007 (Rel. 94, Created)
DT 16-DEC-2008 (Rel. 98, Last updated, Version 2)
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DE Polygonum ringspot tospovirus NSm (NSm) and glycoprotein G1/G2 precursor
DE (G1/G2) genes, complete cds.
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KW .
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OS Polygonum ringspot tospovirus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-4689
RX PUBMED; 18953484.
RA Ciuffo M., Tavella L., Pacifico D., Masenga V., Turina M.;
RT "A member of a new Tospovirus species isolated in Italy from wild buckwheat
RT (Polygonum convolvulus)";
RL Arch. Virol. 153(11):2059-2068(2008).
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RN [2]
RP 1-4689
RA Ciuffo M., Turina M., Pacifico D.;
RT ;
RL Submitted (08-NOV-2007) to the EMBL/GenBank/DDBJ databases.
RL Ivv, Cnr, Strada Delle Cacce 73, Torino, TO 10135, Italy
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FH Key Location/Qualifiers
FH
FT source 1. .4689
FT /organism="Polygonum ringspot tospovirus"
FT /segment="M"
FT /host="Fallopia convolvulus"
FT /isolate="Plg3"
FT /mol_type="genomic RNA"
FT /country="Italy"
FT /db_xref="taxon:430606"
FT gene 63. .986
FT /gene="NSm"
FT CDS 63. .986
FT /codon_start=1
FT /gene="NSm"
FT /product="NSm"
FT /note="movement protein"
FT /protein_id="ABX65309.1"
FT /translation="MSRIANVFENFARNENRELVPAVKKTDKDNRLALSRKVTSKDVTD
FT AMKKKASTFNGNQYISSSDATVLGSYEGGSSIENSSDDILSRLIVEKSTHLSNWKDDSL
FT VGNGEEKVSCTINIIPTWDSKRKYMHISRLIVWVVPTIPDSQGFVKATIDQNKLTPKER
FT LIIGKQGTLANPLCFVFHLNWSFNKDRNVPKRCMQLNLTSNEKYAKGVSFASVMYSWVK
FT NFCDTAIASDSNTCDVIPINRAKAIKSAALIEACKLMIPKGTTGKAIKNQIVSLQKIAE
FT KVALEDDADEVTEVLEIEIDDPNDQF"
FT gene complement(1254. .4661)
FT /gene="G1/G2"
FT CDS complement(1254. .4661)
FT /codon_start=1
FT /gene="G1/G2"
FT /product="glycoprotein G1/G2 precursor"
FT /protein_id="ABX65310.1"
FT /translation="MNRHYLLLYCLGVYLMFTITEVFLMNHAEDHEDTKMELKRLKDRY
FT KIDDPEDLLEDSIKDTGMVATSGAHPSLESKTSGRSPREVTTSSSPVLDPRGNFNFSCE
FT GFDKSQCIIKSVSDFNAHYQIRNLRYVLACITDSEKIFDMCLFDSDIKRRDFLKVPVVP
FT VLKLENKRVLEVGSKFFFVDSSNDPVPIDPNAGMVNATISRLSVRLSGDCVITKVSMSS
FT PYMIKIKTAENIGFAVKDVRDSQAADLQTASGDRSVYFKNSELDGNHFFLCGDKSSLIS
FT KVDVPVRNCVSKYADEPKKIFFCANFSFFKWIFTLLVIAFPVTWLLWKTKNAFMVWYDI
FT IGILTYPILVLINYFWVYFPFRCKVCGNLSFLTHTCSKLCVCNQCEPSKEHAKECYLFS
FT KDTQEWRSLSLIDHFQFTVNTKISSEFLVFLTKMLIAAVLISYIPSSMALSMQKNVCVE
FT RCYYSKDLERLTTDKDGSSRNAIDTCDCSIGDLITETVYRGGTPISRATTKNDCVLSSS
FT ACLTSSNQAKNLFACRNGCNALTTLEKIPTVKYSSNYRGIEYSGNLTVLKIANRLRKGF
FT VDNQSEVRNLESKVSKDLLYFKNLKVDDVPPSNLMPRQSLVFSTEVDGKYRYLIEMDIK
FT KETGSVFLLNDDSSHVPMEFIIYVKNVGVDYDIKYKYSTAKVETTVTDFLSTCTGTCED
FT CKTQKPLTGRHDFCVQPTSWWGCEELGCLAIDEGAICGHCTNVFDLSTLVNVYQVVQSH
FT VAAEICIKSVNGYDCRKHTDKVPIQTDYYQLDMTVDLHNDYMSTDKLFAVNKQQKVLTG
FT SISDLGDFSSSAFGHPQINIDGKPLAVPATLSRDQFSWSCSAVGAKSVNIRQCGLFSYN
FT MIYALTQSRDFAVLSESENKLYMTKDFLVGKLKVVVDMPKEMFKKPPSKPAISETKVNC
FT SGCFKCAMGLECDLEYTSDTTFSSRLEIEGCSFKSDQLGSYIGPNKKKIKAYCSDSIKD
FT KNIKMVAEDDDELSIELKIDQVDVVEQDTITNYDDKSAHDENIHHSDTGLATLWDWIKA
FT PFNWVASFFGNFFDVVRVILVIIAICVGIYIISYIYSLSFSYYKEKRNKKIEFDLEEVS
FT QSLLKMSKRDGERRRKSPPKTFEFPLEF"
XX
SQ Sequence 4689 BP; 1524 A; 925 C; 802 G; 1438 T; 0 other;
eu271753 Length: 4689 16-DEC-2008 Type: N Check: 4056 ..
1 agagcaatcg gtgcaacaat taaatatcta aaacaacttc agccaagtga
51 atcgtaacca gtatgtctcg catagctaac gtgtttgaga acttcgccag
101 aaatgagaac agagagctag ttcctgcagt taagaaaacc gacaaagaca
151 acaggcttgc tttgagcagg aaagtgacaa gcaaagatgt cactgatgcc
201 atgaagaaaa aagcttcaac atttaatggc aaccagtaca tctcatcttc
251 agatgccaca gtcttggggt cctatgaagg cggttcctcc atagagaaca
301 gctcagatga catcttatcc agactcattg tggaaaaaag tacccatttg
351 agcaattgga aagatgattc tcttgttggt aatggtgagg aaaaagtaag
401 ttgcacaata aatattatcc caacctggga cagcaaaaga aagtacatgc
451 atatatcaag gcttattgtg tgggttgtac ccacaatacc agattctcag
501 gggtttgtaa aagcaacaat tgaccagaac aaactgacac ctaaagagag
551 gctgatcatt ggcaaacagg gaacgcttgc aaaccctctt tgctttgttt
601 tccatctaaa ctggtccttc aacaaggaca gaaatgtacc aaaaaggtgc
651 atgcagctaa acctgacaag taatgaaaaa tatgctaaag gagtctcctt
701 tgcatcagtc atgtattctt gggtcaagaa cttctgcgat actgctatag
751 cttctgatag caacacatgt gatgtgatac ccataaatag ggctaaagcc
801 atcaaatctg ctgctttaat tgaagcatgc aagcttatga tccccaaggg
851 gaccacaggg aaggcaataa agaaccagat agtgtctctc caaaaaattg
901 ctgagaaagt agccttggag gatgatgctg atgaggtcac agaagtttta
951 gaaatagaaa tagatgatcc taatgatcaa ttttaaaaag gctcgcaatg
1001 cttttaattt ccttttcttg tcatttaagc tttatcgcaa aataaaacaa
1051 aaaagaaaac aacaaaaaaa gaggaaaaga aaataaaaca aaagaaaaaa
1101 gagaaaagaa aagaaaagaa aagaaaaaag aaggaatgta tataaataag
1151 gccaaggcca accttggcct tttggggctc tttttgggtt ttgtttgttt
1201 tatttatttt tatttctttt tgtttgttta tttgtttgtc tcctttaact
1251 tgtttaaaat tctagaggga attcaaatgt cttcggtggg ctttttctcc
1301 tacgttctcc atctctcttt gacattttca agagagattg actgacttct
1351 tctagatcaa actctatctt cttattcctt ttttctttgt agtagctgaa
1401 agacaaacta tagatataac taataatata aatacctaca caaatagcta
1451 tgatcactaa aatcactcta acaacgtcaa agaaattgcc gaaaaatgaa
1501 gcaacccagt tgaatggtgc ttttatccaa tcccacaatg ttgcaagtcc
1551 tgtgtcagaa tggtgtatgt tctcatcatg tgcacttttg tcatcataat
1601 tggttatagt atcttgttcc acaacatcca cttggtcaat cttcaactca
1651 atggaaagtt catcgtcatc ttctgcaacc atcttaatgt ttttatcttt
1701 tatgctgtct gaacaatatg cttttatctt ctttttgttt ggaccaatgt
1751 aacttcccaa ttgatctgat ttgaaagagc aaccttctat ttccaaccga
1801 gaagagaacg tggtatcgga agtatattct aaatcgcatt ctagacccat
1851 ggcacatttg aaacaaccag agcaattaac tttagtttca ctgattgctg
1901 gcttgctagg tggttttttg aacatttctt ttggcatgtc aacaactacc
1951 ttcaatttcc caacaaggaa atcttttgtc atgtataact tgttctcact
2001 ctcactaagg acagcaaaat ctctggactg ggttaatgca tatatcatgt
2051 tgtaactgaa cagtccgcat tgtctaatat tgacagattt agctccaact
2101 gcagaacaac tccaagaaaa ttggtctcga gataaagtag ctggaactgc
2151 cagtggttta ccatcaatgt ttatttgagg atgtccaaaa gcacttgaag
2201 agaaatctcc caaatcagat atacttcctg tcagcacctt ctgttgcttg
2251 ttcacagcaa acaatttgtc agtactcatg tagtcattat gaagatcaac
2301 agtcatatcc aactgatagt aatctgtctg tatcgggacc ttgtctgtgt
2351 gttttctaca atcataccca ttaacagatt taatgcatat ttctgcagca
2401 acatggcttt gaacaacttg ataaacattg actaaagtac taagatcaaa
2451 aacatttgta caatgaccac aaatggctcc ttcatctatt gcaaggcagc
2501 ccagttcttc acaaccccac caggatgttg gttgaacaca gaaatcatgt
2551 cttccagtaa gaggtttctg cgtcttacaa tcctcacaag tacctgtgca
2601 tgttgagaga aaatcagtta ctgtggtttc aactttagct gtagaatatt
2651 tgtacttaat atcatagtct acacctacgt tttttacata aattatgaac
2701 tccataggta catgagaact atcatcattc aacaaaaaga cagatcctgt
2751 ttctttcttt atatccatct ctatcaagta tctatacttt ccatcaactt
2801 ctgttgagaa taccaaagat tgtctaggca ttagatttga tggaggaaca
2851 tcatccactt ttaggttttt gaaatacaac aaatcttttg aaacttttga
2901 ttccaaattc ctgacttcag attgattgtc aacaaatcct ttcctaagcc
2951 tgttagctat tttcaaaaca gtcaaattgc cagaatattc tattcctctg
3001 taattgctac tgtacttcac tgtaggtatt ttctctaatg ttgtcaaagc
3051 attgcaaccg tttctgcatg caaatagatt tttcgcttga ttagaactgg
3101 tcaaacatgc ggaagatgac aaaacacaat cattctttgt tgtagctcta
3151 gatatcggag tacctcctct gtaaacagtt tctgttatca agtccccaat
3201 tgaacaatca catgtgtcaa tagcatttct cgatgaaccg tccttgtcag
3251 tagtcaatct ctctaaatct ttgctgtaat aacatctttc aacacaaaca
3301 ttcttctgca tggataatgc catactagat ggtatgtaag aaatcaacac
3351 agcagctatt aacatttttg tcaagaaaac aagaaattca gaactgattt
3401 ttgtgttaac agtaaactga aagtggtcaa tcaaagacaa acttctccat
3451 tcttgtgtat ctttcgagaa aaggtaacat tcttttgcat gctctttaga
3501 tggctcacat tgattgcaaa cacataattt agaacaagtg tgtgtaagaa
3551 atgagaggtt tccgcaaact ttacacctga aaggaaaata cacccaaaag
3601 taattgatca aaacaaggat tggataagtc agaattccta ttatatcata
3651 ccacaccata aaagcatttt tagtcttcca aagcaaccat gtgactggga
3701 aagctattac caaaagggta aagatccatt tgaagaatga aaaattggca
3751 caaaagaaga ttttctttgg ttcatctgca tacttggaaa cacaattcct
3801 tacaggaaca tctactttgc ttatcaaact ggatttgtcc ccacaaagaa
3851 agaaatggtt tccatcgagt tcactatttt tgaaataaac agacctatct
3901 ccagaagctg tttgaagatc tgcagcttga gaatctctca catctttcac
3951 agcaaaacct atattttctg ccgtttttat cttgatcatg taaggtgacg
4001 acattgaaac tttagttatg acacaatcac ctgagagcct aacagaaagt
4051 ctagagattg tggcattcac catgcctgca tttggatcaa taggaaccgg
4101 atcgtttgat gaatccacaa aaaagaattt agaccctacc tccaaaactc
4151 ttttgttttc caatttcaga acaggaacta caggtacttt aagaaagtct
4201 ctcctcttta tgtcagaatc aaacaaacac atgtcaaata tcttttcaga
4251 atcagttatg caagccaaaa catacctcaa attcctgatc tggtaatgag
4301 cattgaaatc gctaacgctt tttataatac attgagattt atcaaagccc
4351 tcgcaagaga aattaaaatt gcctcttggg tccaaaacgg gtgagctaga
4401 tgtagtaact tctctgggac ttcttcccga agtctttgat tccaaagacg
4451 ggtgagcacc agatgttgca accatacctg tatctttgat tgaatcttct
4501 aggagatctt ctggatcgtc aattttgtat ctatctttaa gcctcttcag
4551 ttccatcttg gtgtcttcat gatcttctgc atgattcata agaaacactt
4601 ctgttatagt aaacatcagg tacacaccaa gacagtagag tagtagatag
4651 tgtcgattca tcttaggctg cttgttgcac cgattgctc