Sequence of DPV Pea seed-borne mosaic virus

Pea seed-borne mosaic virus isolate PSB141CZ polyprotein gene, partial cds.

ACC No: EU293760

Dated: 2008-12-16 | Length: 1106 | CRC: -1237393522

                
ID   EU293760; SV 1; linear; genomic RNA; STD; VRL; 1106 BP.
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AC   EU293760;
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DT   16-DEC-2008 (Rel. 98, Created)
DT   16-DEC-2008 (Rel. 98, Last updated, Version 1)
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DE   Pea seed-borne mosaic virus isolate PSB141CZ polyprotein gene, partial cds.
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KW   .
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OS   Pea seed-borne mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1106
RA   Safarova D., Navratil M., Petrusova J., Pokorny R., Piakova Z.;
RT   "Genetic and biological diversity of the Pea seed borne mosaic virus
RT   isolates occurring in Czech Republic";
RL   Unpublished.
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RN   [2]
RP   1-1106
RA   Safarova D., Navratil M., Petrusova J.;
RT   ;
RL   Submitted (21-NOV-2007) to the EMBL/GenBank/DDBJ databases.
RL   Dept. of Cell Biology and Genetics, Faculty of Science, Palacky University
RL   in Olomouc, Slechtitelu 11, Olomouc CZ 783 71, Czech Republic
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1106
FT                   /organism="Pea seed-borne mosaic virus"
FT                   /host="pea"
FT                   /isolate="PSB141CZ"
FT                   /mol_type="genomic RNA"
FT                   /country="Czech Republic"
FT                   /note="pathotype P-1"
FT                   /db_xref="taxon:12208"
FT   CDS             <1. .951
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ABZ89736.1"
FT                   /translation="EKYTEAINQHYNDEGGDGSIKVRLQAGDETKDDERRRKEEEDRKK
FT                   REESIDASQFGSNRDNKKNKNKESDTSNKLIVKSDRDVDAGSSGTITVPRLEKISAKIR
FT                   MPKHKGGMAISLQHLVDYNPAQVDISNTRATQSQFDNWWRAVSQEYGVGDNEMQVLASG
FT                   LMVWCIENETSPNINGMWTMMDGEEQVEYPLKPVMDNARPTFRQIMAHFSDVAEAYIEK
FT                   RNSTEVYIPRYALQRNLRDPSLARYGFDFYEITAKTPVRAREAHFQMKAAAIRGKSNSL
FT                   FGLDGNVGTQEENTERHTAEDVNQNMHNLLGMRAM"
FT   mat_peptide     <1. .75
FT                   /product="NIb polymerase"
FT   mat_peptide     76. .948
FT                   /product="coat protein"
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SQ   Sequence 1106 BP; 376 A; 194 C; 288 G; 248 T; 0 other;

eu293760 Length: 1106  16-DEC-2008  Type: N  Check: 8087  ..

       1  gagaaataca cggaagcaat caatcagcat tacaatgatg aaggtggcga
      51  tggatcaatc aaggttcgat tgcaagctgg tgacgaaacc aaggatgatg
     101  aaagaagaag gaaagaggag gaggacagaa agaaaagaga ggagagtatc
     151  gatgcgagcc agtttggttc gaatcgtgac aataagaaaa acaaaaataa
     201  agagagtgac acatcaaaca aattaatagt gaagtctgat cgagatgttg
     251  atgcaggatc ttcaggcaca atcacagtac caaggcttga aaagatctca
     301  gcaaagatta ggatgccaaa acacaaaggc ggaatggcta tcagcttgca
     351  acatttagtt gattacaatc cagcacaagt tgacatttca aacactcgag
     401  caacgcagag ccagttcgat aactggtgga gggcagtgtc gcaagagtac
     451  ggggttggag acaatgaaat gcaagttttg gcaagtggtt tgatggtatg
     501  gtgcattgaa aatgaaacat cgcctaacat aaatgggatg tggacaatga
     551  tggacgggga agagcaggtt gagtaccccc taaagccagt gatggataac
     601  gcgcgtccaa ctttcagaca gataatggcg catttcagtg acgtagcgga
     651  ggcgtacatt gaaaagagaa actcaacaga ggtgtacata cccaggtacg
     701  ctctacaacg caatttaagg gacccgagtc ttgcaagata tggtttcgac
     751  ttctacgaaa tcacagcaaa gacacctgtg agggcaagag aggcacactt
     801  tcagatgaaa gcagcagcaa tcagaggaaa atccaatagc ctattcggct
     851  tggatgggaa cgttgggaca caggaggaga acacggagag gcacacagca
     901  gaagatgtca atcagaatat gcacaatctt ctcggaatga gagccatgta
     951  atccgtatgt atttttagta ctgtcataca ttttcgttaa atttcagtgt
    1001  gtctttgaca ccatgtttaa tagcattatg tattctaggg ttctattatc
    1051  atcaattcca taatgagtct ttgacttcgg tttggtggca gtagggcttt
    1101  ctggag