Sequence of DPV Pea seed-borne mosaic virus

Pea seed-borne mosaic virus isolate PSB58CZ polyprotein gene, partial cds.

ACC No: EU293765

Dated: 2008-12-16 | Length: 1102 | CRC: -1476910841

                
ID   EU293765; SV 1; linear; genomic RNA; STD; VRL; 1102 BP.
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AC   EU293765;
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DT   16-DEC-2008 (Rel. 98, Created)
DT   16-DEC-2008 (Rel. 98, Last updated, Version 1)
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DE   Pea seed-borne mosaic virus isolate PSB58CZ polyprotein gene, partial cds.
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KW   .
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OS   Pea seed-borne mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1102
RA   Safarova D., Navratil M., Petrusova J., Pokorny R., Piakova Z.;
RT   "Genetic and biological diversity of the Pea seed borne mosaic virus
RT   isolates occurring in Czech Republic";
RL   Unpublished.
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RN   [2]
RP   1-1102
RA   Safarova D., Navratil M., Petrusova J.;
RT   ;
RL   Submitted (21-NOV-2007) to the EMBL/GenBank/DDBJ databases.
RL   Dept. of Cell Biology and Genetics, Faculty of Science, Palacky University
RL   in Olomouc, Slechtitelu 11, Olomouc CZ 783 71, Czech Republic
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1102
FT                   /organism="Pea seed-borne mosaic virus"
FT                   /host="pea"
FT                   /isolate="PSB58CZ"
FT                   /mol_type="genomic RNA"
FT                   /country="Czech Republic"
FT                   /note="pathotype P-4"
FT                   /db_xref="taxon:12208"
FT   CDS             <1. .948
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ABZ89741.1"
FT                   /translation="ERYIEAIDQHYNEDGNGPIIVRLQAGDETKDEERRRKEEEDRKRR
FT                   EENIDASQFGSSRDNKKNKNKESDTSNKAIVKSDRDVDAGTSGTITVPRLEKISAKIRM
FT                   PKHKGGVAISLQHLVDYNPAQVDISNTRATQNQFDNWWRAVSQEYGIGDSEMQVLASGL
FT                   MVWCIENGTSPNINGMWTMMDGEEQVEYPLKPVMDNARPTFRQIMAHFSDVEEAYIEKR
FT                   NSTEVYIPRYALQRNLRDPSLARYGFDFYEITAKTPVRAREAHFQMKAAAIRGKSNSLF
FT                   GLDGNVGTQEENTERHTAEDVNQNMHNLLGMRAM"
FT   mat_peptide     <1. .75
FT                   /product="NIb polymerase"
FT   mat_peptide     76. .945
FT                   /product="coat protein"
FT   3'UTR           949. .1102
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SQ   Sequence 1102 BP; 375 A; 194 C; 291 G; 242 T; 0 other;

eu293765 Length: 1102  16-DEC-2008  Type: N  Check: 2691  ..

       1  gaaaggtaca tagaggcaat tgatcagcac tacaatgagg atggtaatgg
      51  tccgattata gtgaggttgc aagctggtga tgagaccaaa gatgaagaga
     101  gacggagaaa agaagaggag gatagaaaga gaagagaaga gaacatcgac
     151  gcaagtcaat ttggctcgag tcgagataac aaaaagaaca aaaacaaaga
     201  gagtgataca tcaaacaaag ccatagtgaa atcagatcga gatgttgatg
     251  caggcacatc aggaaccatc acagtgccta gactcgaaaa gatttcagca
     301  aaaattagaa tgccgaagca caaaggtggg gtggcgatta gtctgcagca
     351  tttggttgat tacaacccag ctcaggtaga catatcaaac actcgcgcaa
     401  cacagaacca atttgataat tggtggaggg cagtgtctca agagtacggg
     451  attggtgaca gcgagatgca agtgttagca agtggcttga tggtgtggtg
     501  tattgaaaac gggacatcgc ctaacataaa tgggatgtgg acaatgatgg
     551  acggggagga acaggttgag taccccctaa aaccagtgat ggataatgcg
     601  cgtccaactt ttagacaaat aatggcgcat ttcagtgacg tagaggaggc
     651  gtacattgaa aagagaaact caacagaagt gtacataccc aggtacgctc
     701  tacaacgcaa tttaagggac ccgagtctag caagatatgg tttcgatttc
     751  tacgaaatca cagccaagac acctgtgagg gcaagagagg cacactttca
     801  aatgaaagca gcagcaatca gaggaaaatc caacagccta tttggtttgg
     851  acgggaacgt tgggacacag gaggaaaaca cggagaggca cacagcagaa
     901  gatgtcaatc agaatatgca caaccttctt ggaatgagag ccatgtaaac
     951  cgtatgtatt ttcagtactg tcatgcattt tcgttaaatt tagtgtgtct
    1001  ttgacaccat gtttaatagc attatgtatt ctagggttct attatcatca
    1051  attccatagc gagtctttga ctccggtttg gtggcagtag ggctttctgg
    1101  ag