Sequence of DPV Barley yellow dwarf virus-PAV
Barley yellow dwarf virus-PAV isolate 05TS3 RNA-dependent RNA polymerase, P1, aphid transmission protein, coat protein, movement protein, and P6 genes, complete cds.
ACC No: EU332313
Dated: 2011-07-07 | Length: 5657 | CRC: -475957992
ID EU332313; SV 1; linear; genomic RNA; STD; VRL; 5657 BP.
XX
AC EU332313;
XX
DT 22-JAN-2008 (Rel. 94, Created)
DT 07-JUL-2011 (Rel. 109, Last updated, Version 2)
XX
DE Barley yellow dwarf virus-PAV isolate 05TS3 RNA-dependent RNA polymerase,
DE P1, aphid transmission protein, coat protein, movement protein, and P6
DE genes, complete cds.
XX
KW .
XX
OS Barley yellow dwarf virus-PAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RC Publication Status: Online-Only
RP 1-5657
RX PUBMED; 21326861.
RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.;
RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf
RT virus-PAV";
RL PLoS One 6(2):E16896-E16896(2011).
XX
RN [2]
RP 1-5657
RA Liu S., Wang X., Liu Y., Zhou G.;
RT "Population genetic diversity of BYDV-PAV from China";
RL Unpublished.
XX
RN [3]
RP 1-5657
RA Liu S., Wang X., Liu Y., Zhou G.;
RT ;
RL Submitted (07-DEC-2007) to the INSDC.
RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of
RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China
XX
DR RFAM; RF00434; BTE.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5657
FT /organism="Barley yellow dwarf virus-PAV"
FT /host="wheat"
FT /isolate="05TS3"
FT /serotype="PAV"
FT /mol_type="genomic RNA"
FT /country="China:Tianshui"
FT /db_xref="taxon:12040"
FT CDS join(142. .1161,1161. .2747)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp; P1-P2 fusion created by -1 ribosomal
FT frameshift"
FT /db_xref="GOA:B0FKN6"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR013674"
FT /db_xref="UniProtKB/TrEMBL:B0FKN6"
FT /protein_id="ABY73577.1"
FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK
FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD
FT FFLKSRGGVYAPLNCEPKAIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW
FT NDLRSRLKLVKSVKDEAKDNIKAASKIGVEFSTPTNIADLYTFTEVTKVETGLTKETTR
FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV
FT ENLGEKYKLDIASKTFLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF
FT LEGLCTTSGFESPFTILGLPEIVVTDGARLRKVSSNISYLTQTHLGLVYKAPNASLHNA
FT LVAIERRVFTVGKGDSAIYPPHPEYDIFSETMGYFAESIVDKVGYCKTYTPQQLAFSYS
FT AGKRAQYFKAIESLKKEPYQMKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT
FT RLKFNEKKIMHAIDGMFGSPTVLSGYDSFTQGRIIASKWQKFASPVAIGVDASRFDQHV
FT SEQALKWEHGIYNGIFGDNELALALEHQLVNNIKMFVEDKMLTFKVRGHRMPGDINTSM
FT GNKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITERANEHLFGGMYDHFLKYGFNMVTE
FT TPVYELGELEFCQSKPVRIGGNYRMVRRPDCIGKDSNTLLSMCNESDVKSYMSAVAQCG
FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFEETPITTDNR
FT MSYWESFGVDPKIQQLVERYYDNLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY"
FT CDS 142. .1164
FT /codon_start=1
FT /product="P1"
FT /note="ORF1"
FT /db_xref="GOA:B0FKN7"
FT /db_xref="InterPro:IPR013674"
FT /db_xref="UniProtKB/TrEMBL:B0FKN7"
FT /protein_id="ABY73578.1"
FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK
FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD
FT FFLKSRGGVYAPLNCEPKAIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW
FT NDLRSRLKLVKSVKDEAKDNIKAASKIGVEFSTPTNIADLYTFTEVTKVETGLTKETTR
FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV
FT ENLGEKYKLDIASKTFLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF
FT "
FT CDS 2861. .4795
FT /codon_start=1
FT /transl_except=(pos:3458. .3460,aa:OTHER)
FT /product="aphid transmission protein"
FT /note="P3-P5 fusion created by ribosomal read-through of
FT the ORF3 stop codon"
FT /db_xref="GOA:B0FKN8"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:B0FKN8"
FT /protein_id="ABY73582.1"
FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA
FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS
FT SINVEFRTHASSTTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ
FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAKXVDSSTPEPKPTPTPTPPPQPEP
FT KPEPTPAPPPKRFFEYVGTPTGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF
FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW
FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVQASGKDACFY
FT IMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRMSRHSESPTRVNNIL
FT IDEGYHQTLAPIQNLGLCDVQTPGQDEVEEDDKQTVSTEPDIALQEYEAATAEIPDAEE
FT DVLPSKEQLSSKPVDTSGEEIPKPPPRDNEILGVYQGQPIYADDVPPIARQKLRDAAKA
FT PSTLLYDKAPKSKSFLSRFVEGNRSKTETTAPSTATTSNLTREQLREYTRIRNTLGLTA
FT AKEYKAQFT"
FT CDS 2861. .3460
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3; P3"
FT /db_xref="GOA:B0FKN9"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:B0FKN9"
FT /protein_id="ABY73579.1"
FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA
FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS
FT SINVEFRTHASSTTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ
FT ATSVNQFFLLYKANGTTTDIAGQFIIKIELHLMTAK"
FT CDS 2901. .3362
FT /codon_start=1
FT /product="movement protein"
FT /note="P4; ORF4 translated via a leaky scanning mechanism"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:B0FKP0"
FT /protein_id="ABY73580.1"
FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMLDAQEEEGQILYLDQNA
FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLGHTRPPL
FT RRALCLLNSTPRASNQPYLATLTHSPSANQPPSPSAQRRLEGPSSRRHR"
FT CDS 4925. .5047
FT /codon_start=1
FT /product="P6"
FT /note="ORF6; highly variable sequence"
FT /db_xref="InterPro:IPR009426"
FT /db_xref="UniProtKB/TrEMBL:B0FKK5"
FT /protein_id="ABY73581.1"
FT /translation="MDDLHVIALCVLSSTILAGTALVIGCCVGCCRLIDAAYSV"
XX
SQ Sequence 5657 BP; 1605 A; 1380 C; 1358 G; 1314 T; 0 other;
eu332313 Length: 5657 07-JUL-2011 Type: N Check: 3550 ..
1 tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca
51 cactcgtttt gtaatcgaga agtagttgca acagagtcct acagttgcct
101 gacaagcctg tagccccctt cttacccttt cactcgccat catggttttc
151 tttgagatgc tcatcggtgc cagtgtgaag gctgtcaaag atttcatcag
201 ccactgctat tccagactca agagtatata ctactctttc aagagatggc
251 tgcttgagat atccgggcaa ttcaaggccc atgacgcctt tgtcaacatg
301 tgctttgggc acatcgctga catcgaggac ttcgaggcgg agctcgctga
351 ggagtacgcc gagaaggagg aggagatcga ggaagcgcga agcttgctcc
401 gcttattaac tgcccagaag tccaaatctg gggtggacga ggcttggacc
451 gacttctttt tgaagtcgag aggcggcgtt tatgcgccac ttaactgcga
501 gccaaaggcc atagagcttg atgccaaagc ggacaagctg gagaagctcc
551 ttgaggacat gcacctgttc gaggtgcgcg cggccaagac ctacatcaag
601 gaaaagggcc gtggattcat caactgctgg aatgacctcc gatcaaggtt
651 gaagttggtg aagtctgtca aagacgaggc caaggacaac attaaagcgg
701 cctccaagat tggtgtggag ttctctactc caaccaatat tgctgatctc
751 tacacattca ctgaggtcac aaaggtagag acaggtctta ccaaggagac
801 gactagggtt gtcaacgggg aggaggagac ttccaccgta cccctggttg
851 aggacgtccg caagattaag gacgacgaag ttagcaggga gagtgcctcc
901 aattggatca gagaggtaat caaattgaaa aattccaccc tctctgctga
951 cgagctttcc ctggcgacca tcgccaggta tgtggaaaat ttaggggaaa
1001 aatacaaact tgacattgca tccaaaacat ttctcaagca atgtgcaatg
1051 atttcggtac caatcccctc ccaaaaagac ataaaaacaa agatggtgat
1101 ccaaagccct gctgcccgtg cacttcgtga gcgcgtggca gttcttgact
1151 cccagggttt ttagaggggc tctgtaccac ctccggtttc gaaagcccat
1201 ttaccattct tggcttaccg gagatagtgg tcacagacgg agcccgactc
1251 cgtaaggtta gtagtaatat tagttacctt acccagaccc atctaggcct
1301 tgtatataaa gcacccaatg catccctgca caacgcgctc gtagctattg
1351 aaaggagagt gtttacagta ggaaaggggg attctgcaat ctaccccccc
1401 caccctgaat atgacatttt ctcagaaaca atgggctact ttgctgagtc
1451 cattgtcgat aaggtgggat actgcaaaac atacacccct cagcaactgg
1501 cttttagtta cagtgcaggg aagagggccc agtatttcaa agccattgag
1551 tccttgaaga aggaaccata ccaaatgaag gactcgaacg tgcaggcatt
1601 cctcaagaag gagaaacact ggatgaccaa agccatcgcc ccgcgcctga
1651 tttgcccccg ctccaagcgg tacaatatca tcctaggaac tcgtttgaaa
1701 ttcaacgaga agaagatcat gcatgccatt gacggtatgt ttggatcccc
1751 cactgtgctt tcaggctatg atagctttac ccaaggcaga atcatagcca
1801 gtaagtggca aaagtttgca tcacccgttg ctatcggtgt tgatgctagc
1851 cgctttgacc aacatgtgtc tgagcaggcg cttaagtggg aacacgggat
1901 atacaatggc atttttggcg acaatgaatt ggcccttgct ctcgaacatc
1951 agcttgtaaa taatattaag atgttcgttg aggataagat gctaaccttc
2001 aaagttaggg gccatagaat gccaggggac attaacacca gcatgggaaa
2051 caagctcatc atgtgtggca tgatgcatgc ttactttaag aagctgggtg
2101 ttgaagcgga actttgtaac aatggagatg attgtgtcat cataactgaa
2151 agggccaatg aacacctttt cggtggaatg tatgaccatt tccttaaata
2201 cggcttcaac atggtgacgg aaaccccggt ttatgaactc ggggaacttg
2251 aattttgcca atctaaaccc gtcagaattg gtggcaacta tagaatggtc
2301 cgcaggcccg attgcatagg gaaagatagt aacacacttt tgagcatgtg
2351 caatgaatcc gacgtcaaaa gctatatgtc ggctgtggct cagtgtggtc
2401 tcgttttgaa tgcgggcgta cccatactcg aaagcttcta ccgctgtctg
2451 tacagaagct cggggtacaa gaaagtaagt gaggaataca tcaaaaacgt
2501 catatcatat ggaacagatg aacgccttca aggtagacgt acctttgagg
2551 agacacctat caccactgac aatcgtatgt catattggga atcatttgga
2601 gttgacccta agattcaaca acttgtcgag aggtactacg acaatcttac
2651 ggtaagtgcc caactccaaa gtgtgaaggt gacatctcca catctgcaat
2701 caatcctcct ctccattccg gagaacaact cgcacaacga atattaatta
2751 ccaaatctta gccgggtttg ggatagggtt tattactagt attccctgta
2801 cattagctct cacgtacttt atttacaata aagtttcaga caccactaga
2851 gaggtggtga atgaattcag taggccgtag aggacctaga agagcaaaca
2901 atggcacaag aaggcggcgc cgtagagcaa ttcggccagt ggttgtggtc
2951 caacccaatc gaacaggacc cagacgacga aatgctagac gcgcaagagg
3001 aagaaggcca aattctgtat ttggaccaaa acgcggggct gaggtattcg
3051 tattctcagt cgacaacctt aaggccaact cctccgggat cctcaaattc
3101 ggtcccgatc tatcgcaatg cccagcggtt tcagacggag tacttaagtc
3151 ctaccacaat tacaagatct caagtatcaa cgttgagttt aggacacacg
3201 cgtcctccac tacgtcgggc gctatgttta ttgaactcga cacctcgtgc
3251 aagcaatcag ccttatctag ctacattaac tcattcacca tcagcaaatc
3301 agcctccaag tccttccgcg cagcggagat tggagggacc cagttccagg
3351 cgacatcggt gaaccagttc tttcttttgt acaaggcaaa tggcacgacg
3401 accgatattg cggggcagtt tatcattaaa attgagcttc acttgatgac
3451 tgccaaatag gtagactcct caacaccgga acccaaaccc acaccaactc
3501 caacaccccc ccctcaacct gagcccaaac cagagcccac acctgcacct
3551 ccccctaaac gcttctttga gtatgttggc accccgaccg gagttatatc
3601 aacccgggaa aacactgata gcatatcagt gtcgaagctt gggggccagt
3651 caatgcagta catagagaac gagaagtgtg agacaaaaac catcgactct
3701 ttctggagca caaacaacaa cgtttcggcg caagccgctt tcgtttttcc
3751 agtgccggaa ggatcgtaca gtgtgaacat ctcgtgtgaa ggtttgcaat
3801 ccgttgacca cattggtggc aacgaagatg gctattggat tgggctcata
3851 gcttactcca attcatcagg tgataattgg ggagtgggca actacaaagg
3901 gtgtgtgttt acaaatttct tggcaacgaa tacctggcga ccaggtcaca
3951 aggatttaaa acttaacgat tgccaattca cagacggaca gatagttgaa
4001 agggatgcag ttatgtcttt ccacgtgcaa gcatcaggca aggacgcctg
4051 tttctacata atggctccca aaacaatgaa aactgacaaa tacaactatg
4101 ttgtctcgta tggagggtac acgaacaaaa ggatggagtt cggtactatc
4151 tccgttacgt gtgatgaatc cgatgttgag gcactccgta tgtccaggca
4201 ctccgagagt cccacccgcg taaataacat tttaatagat gaaggatacc
4251 atcaaacttt agctcccata caaaatttag gactgtgtga tgtgcaaact
4301 cccggtcaag atgaggtaga ggaggatgat aaacaaactg tttctactga
4351 acctgatata gcgctgcagg aatacgaggc cgcaacagct gagattccag
4401 acgctgaaga ggatgtcttg ccctctaagg aacagctttc atctaaacct
4451 gtggacacat ccggcgagga aattccaaaa ccccccccga gggacaatga
4501 aatccttgga gtctaccaag gtcaacctat atacgctgat gatgtgccac
4551 ccattgccag gcagaaactt cgagacgccg ccaaagcacc ttccaccctg
4601 ctatacgaca aggcaccaaa atccaagtcg tttttatccc gttttgtgga
4651 agggaacagg tccaagacag aaaccactgc tccatcaacc gcaacgacat
4701 ctaatttgac cagggagcag cttcgtgaat atactagaat tagaaatacc
4751 ttaggcctca ccgccgcaaa ggagtacaag gcacaattta cgtgaagaca
4801 aacaccactc gcgcaaatcg gatcctggga aacaggctga acttaggttc
4851 gtaagctcgg gtgattggag ggtgggctgt caacccacca ccaactcacc
4901 gccgtatcgt attgcgtgtg gccgatggat gatcttcacg ttatcgccct
4951 ctgtgtcctt tcctcaacca tcctggctgg cacagcgcta gtgattggtt
5001 gttgcgtcgg ttgttgcagg ttaatagacg cggcttattc tgtgtaagtt
5051 gcgaccaaaa atatcgagga agcttcggct tagtgagagg attaacgacc
5101 ctcagcaatg gctggtcttg gcaagcctga atagcttgct ataggacaac
5151 tggaaaccca ccagtgatca aataaggtag cttgcttctg agctatacac
5201 tgcccccgcg caatcggggt aaacaactat aactgcccaa ctcgatgaaa
5251 cgagagtgga ggtggcggag tgggtgactt cgtgatgtgc acccgaacgt
5301 caggtttgga gacgttataa aacacagcga gatgagaacc tcgttaaaag
5351 ttcctcggct gatacaccca gtcgaccgga cctgttggca tacccttgat
5401 acgaaacaag ggcttctgag agccactacc tgtgatgcaa ggtagggtaa
5451 gagtcttagc aacctctgta ctcggaagtg gacataaacc atagcaatcc
5501 aacagcatcc cggaagagag ttttcctcac caggtggaac gtgccacggg
5551 cctgtctcaa gcaatctagc tctgcttgac acagtatccc atagaagcaa
5601 ttctatgggg ggactggact ctgactgccg acactcgcaa gagaagttcg
5651 gcatccc