Sequence of DPV Barley yellow dwarf virus-PAV
Barley yellow dwarf virus-PAV isolate 05ZZ13 RNA-dependent RNA polymerase, P1, aphid transmission protein, coat protein, movement protein, and P6 genes, complete cds.
ACC No: EU332327
Dated: 2011-07-07 | Length: 5652 | CRC: 1903593484
ID EU332327; SV 1; linear; genomic RNA; STD; VRL; 5652 BP.
XX
AC EU332327;
XX
DT 22-JAN-2008 (Rel. 94, Created)
DT 07-JUL-2011 (Rel. 109, Last updated, Version 2)
XX
DE Barley yellow dwarf virus-PAV isolate 05ZZ13 RNA-dependent RNA polymerase,
DE P1, aphid transmission protein, coat protein, movement protein, and P6
DE genes, complete cds.
XX
KW .
XX
OS Barley yellow dwarf virus-PAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RC Publication Status: Online-Only
RP 1-5652
RX PUBMED; 21326861.
RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.;
RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf
RT virus-PAV";
RL PLoS One 6(2):E16896-E16896(2011).
XX
RN [2]
RP 1-5652
RA Liu S., Wang X., Liu Y., Zhou G.;
RT "Population genetic diversity of BYDV-PAV from China";
RL Unpublished.
XX
RN [3]
RP 1-5652
RA Liu S., Wang X., Liu Y., Zhou G.;
RT ;
RL Submitted (07-DEC-2007) to the INSDC.
RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of
RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China
XX
DR RFAM; RF00434; BTE.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5652
FT /organism="Barley yellow dwarf virus-PAV"
FT /host="wheat"
FT /isolate="05ZZ13"
FT /serotype="PAV"
FT /mol_type="genomic RNA"
FT /country="China:Zhengzhou"
FT /db_xref="taxon:12040"
FT CDS join(141. .1160,1160. .2746)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp; P1-P2 fusion created by -1 ribosomal
FT frameshift"
FT /db_xref="GOA:B0FKX0"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR013674"
FT /db_xref="UniProtKB/TrEMBL:B0FKX0"
FT /protein_id="ABY73661.1"
FT /translation="MLLFELLIGASVKAVKDFISHCYSRLKSIYYAFKRWLMEISGQFK
FT AHDAFVNMCFGHIADIEDFEAELAEEFAEKEEEIEEAQSLLRLLVAQKSKHGVTEAWTD
FT FFLKSRGGVYAPLSCEPTAAELGVKSDKLERLLGEMHQFEVRAAKKYIKEKGRGFINCW
FT NDLRSRLKLVKEVKDEARDNIKAASKIGAEFSAPTNIEDLYSFTEVKKVETGLMKEVIK
FT VVQGEEVKEMKPITEDVRSIKDNAQDRENASNWIREVIKLKNSTLSADELSMATIARYV
FT ENIGDKYQMDIASKTYLKQCAMMSVPIPTTKDIKMKMVLQSPAARALRERVAVLDSQGF
FT LEGLCTSSGFESPFSILGLPEIEVTDGARLRKVSSNIKYLTQTHLGLVYKAPNASLHNA
FT RVAVERRVFTVGKGDAAIYPPRPVHDIFTDTMDYFKESIINEVGYCKTYPAQALALSYS
FT AGKRSQYFKAIESLKREPYQRKDANVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT
FT RLKFNEKKIMHAIDSVFGSPTVLSGYDNFQQGRIIAKKWQKFASPVAIGVDASRFDQHV
FT SEQALKWEHGIYNGIFGSTELATALEHQLVNNIKMFVEDKMLRFKVIGHRMSGDINTSM
FT GNKLIMCGMMHAYFKMLGVEAELCNNGDDCVIITDRVNEKLFDGMYQHFLQYGFNMVTE
FT APVYELEKLEFCQSRPVRIDGKYRMVRRPDCIGKDSTTLLSMLNESDVKSYMSAVAQCG
FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFKETPITDDNR
FT MSYWESFGVDPKIQQLVERYFDDLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY"
FT CDS 141. .1163
FT /codon_start=1
FT /product="P1"
FT /note="ORF1"
FT /db_xref="GOA:B0FKX1"
FT /db_xref="InterPro:IPR013674"
FT /db_xref="UniProtKB/TrEMBL:B0FKX1"
FT /protein_id="ABY73662.1"
FT /translation="MLLFELLIGASVKAVKDFISHCYSRLKSIYYAFKRWLMEISGQFK
FT AHDAFVNMCFGHIADIEDFEAELAEEFAEKEEEIEEAQSLLRLLVAQKSKHGVTEAWTD
FT FFLKSRGGVYAPLSCEPTAAELGVKSDKLERLLGEMHQFEVRAAKKYIKEKGRGFINCW
FT NDLRSRLKLVKEVKDEARDNIKAASKIGAEFSAPTNIEDLYSFTEVKKVETGLMKEVIK
FT VVQGEEVKEMKPITEDVRSIKDNAQDRENASNWIREVIKLKNSTLSADELSMATIARYV
FT ENIGDKYQMDIASKTYLKQCAMMSVPIPTTKDIKMKMVLQSPAARALRERVAVLDSQGF
FT "
FT CDS 2860. .4791
FT /codon_start=1
FT /transl_except=(pos:3457. .3459,aa:OTHER)
FT /product="aphid transmission protein"
FT /note="P3-P5 fusion created by ribosomal read-through of
FT the ORF3 stop codon"
FT /db_xref="GOA:B0FKX2"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:B0FKX2"
FT /protein_id="ABY73666.1"
FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQSNRAGPRRRNARRA
FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGIIKFGPDLSQCPAVSDGVLKSYHNYKIS
FT SVNVEFKSHASSTTSGAMFIELDTSCKQSALASYINSFTISKSASKSFKATEIGGTQFQ
FT ASSVNQFFLLYKANGTTSDTAGQFIIKLEIHLMTAKXVDSSTPEPTPAPAPQPTPQPAP
FT EPTPAPAPKRFFEYIGTPMGVISTRENTDSISVSQLGGQSMQYIENEKCETRTIDSFWS
FT TNNNVAAQAAFVYPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGIIAYSNSSDDNWGI
FT GNYRGCSFKNYLATNTWRPGHKDLKLNDCQFTGGQIVERDSIISFHVEATGTDACFYLM
FT APKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAIRIAKHSATPNRANHILVS
FT ERYQDVLPTIENQGLCDVETPGQETSIVEEDDKQSVSTEPEIAVKEYEAAVAEIPDAEE
FT DVLPSKEQLSSRPVDTSGNTIPRTKEPEVLGTYQGQNIYPEDVPPAARQALREAARAPS
FT TMLYDKAPKGAKSILSRFVEGNRSKTTPAAPSVSTTSNMTREQLKEYTRIRNSLGVTAA
FT KEYKAQLQ"
FT CDS 2860. .3459
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3; P3"
FT /db_xref="GOA:B0FKQ1"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:B0FKQ1"
FT /protein_id="ABY73663.1"
FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQSNRAGPRRRNARRA
FT RGRRPNSVFGPKRGAEVFVFSVDNLKANSSGIIKFGPDLSQCPAVSDGVLKSYHNYKIS
FT SVNVEFKSHASSTTSGAMFIELDTSCKQSALASYINSFTISKSASKSFKATEIGGTQFQ
FT ASSVNQFFLLYKANGTTSDTAGQFIIKLEIHLMTAK"
FT CDS 2900. .3361
FT /codon_start=1
FT /product="movement protein"
FT /note="P4; ORF4 translated via a leaky scanning mechanism"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:B0FKW8"
FT /protein_id="ABY73664.1"
FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMLDAQEEEGQILYLDQNA
FT GLRYSYSQSTTLKPIPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLSHTRPQL
FT RPALCLLNSTPRASNQPWLATLTHSPSANLPQSPSKRRRLEGPNSRHPR"
FT CDS 4920. .5042
FT /codon_start=1
FT /product="P6"
FT /note="ORF6; highly variable sequence"
FT /db_xref="InterPro:IPR009426"
FT /db_xref="UniProtKB/TrEMBL:B0FKX5"
FT /protein_id="ABY73665.1"
FT /translation="MNDIHVIAVCVLATTVLTGFAAVVGCCFGCVRTLNALCSV"
XX
SQ Sequence 5652 BP; 1677 A; 1323 C; 1334 G; 1318 T; 0 other;
eu332327 Length: 5652 07-JUL-2011 Type: N Check: 81 ..
1 tgaagattga ccatctcaca gaagtgtttt cgtgctggaa aaccgcaacc
51 cgaccctttt gtattgggta agttgttgca aaaaaggtca cggtactggc
101 tgacacccta ccgtccaccc ctctctccct ctcacacaaa atgcttcttt
151 ttgaactttt gatcggcgcc agcgtcaagg cggtcaagga cttcattagc
201 cattgctact caagattgaa aagcatatat tatgctttta aaagatggct
251 tatggagata tcggggcagt tcaaggccca tgacgccttt gtcaacatgt
301 gttttggaca catcgctgac atcgaggact tcgaagctga actcgctgag
351 gagttcgctg agaaggaaga ggagatcgag gaagctcaaa gcctccttag
401 actgcttgtc gcccaaaaat caaaacatgg ggtgacagag gcttggaccg
451 acttctttct gaagtcgaga ggtggggttt acgccccact ttcctgcgag
501 cctacagcag cagagcttgg cgtcaaaagc gacaagctcg aaagactcct
551 cggggagatg caccaatttg aggtgcgagc ggccaagaaa tacataaaag
601 aaaagggccg cggattcatc aactgctgga atgatctccg ttccaggctg
651 aagttggtga aggaggtgaa ggatgaggcg agagacaata taaaggcagc
701 ttctaagata ggagctgaat tttctgcgcc caccaacatc gaggacctct
751 acagtttcac agaggtcaag aaagtggaga ctggcctcat gaaagaggtc
801 attaaagtcg tccagggcga ggaagtgaag gagatgaagc ccatcactga
851 agatgtgcgc tccatcaagg acaacgccca agacagagag aacgcttcca
901 attggatacg agaggttata aagctgaaaa attcgacact ctctgctgat
951 gaactctcta tggcaactat cgcccgatat gttgaaaaca tcggcgataa
1001 gtaccaaatg gacattgcat ccaagacata tctcaagcaa tgtgccatga
1051 tgtccgtacc tatcccaacc acgaaggaca tcaaaatgaa gatggtgctc
1101 caaagccccg ctgcacgcgc cctcagggaa cgcgttgcag ttcttgattc
1151 tcagggtttt tagaggggct ctgtacctcc tctggttttg aaagtccctt
1201 ttccatactt ggactaccag agattgaggt cacagacgga gcccgactcc
1251 gtaaggttag tagtaatatt aagtacctaa cccaaaccca tctcggcttg
1301 gtatacaaag cccccaatgc gtccctgcac aatgcaagag ttgcagtgga
1351 aagaagagta tttacagtag gaaaggggga tgctgcaatc tacccccccc
1401 gccctgtgca tgacattttc actgatacga tggattactt caaggaatcc
1451 attatcaatg aggtgggcta ctgtaaaaca taccctgcgc aagcacttgc
1501 cctcagctat agtgcaggga aaaggtcaca atacttcaaa gccatcgagt
1551 ccttaaagag agaaccctac caaaggaagg acgcgaatgt acaggcattc
1601 ctcaagaagg agaagcattg gatgaccaaa gccatcgccc cccgattgat
1651 ttgcccccgc tcaaagcggt ataacatcat ccttggaact cgtttgaaat
1701 tcaacgagaa gaagatcatg cacgctattg atagtgtgtt tggatccccc
1751 actgtgcttt ctggttacga caacttccag cagggaagaa tcatagccaa
1801 aaagtggcaa aagtttgcat cacctgtcgc catcggtgtt gatgctagcc
1851 gtttcgacca gcatgtgtcg gaacaggcgc ttaagtggga acacgggata
1901 tacaatggga tcttcggaag cactgagcta gcaactgctc tcgaacatca
1951 actcgtaaac aacattaaga tgttcgttga agacaaaatg ctaaggttca
2001 aagtaattgg acatagaatg tccggggata ttaacaccag catgggaaat
2051 aaattgataa tgtgcggcat gatgcacgca tattttaaaa tgctgggagt
2101 tgaagccgaa ctttgtaaca acggagacga ttgtgtcatc ataacagaca
2151 gagtcaatga gaaactcttt gatggcatgt atcagcactt tcttcagtac
2201 ggtttcaaca tggtgacgga ggctccagtg tacgaactgg aaaaacttga
2251 gttttgccaa tcaagacccg tcagaataga tggcaaatac agaatggtca
2301 gaagaccaga ttgcattggg aaggacagta ccacactttt gagcatgctt
2351 aacgaatccg acgttaaaag ctacatgtcg gctgtggctc agtgtgggct
2401 tgttttgaat gcgggtgtac ccatactcga aagcttctat cggtgtttat
2451 acagaagttc ggggtacaag aaagtaagtg aggaatatat caaaaacgtc
2501 atatcatatg gaacagatga acgccttcaa ggtagacgta ccttcaagga
2551 gacacctatc acagacgata atcgcatgtc gtattgggaa tcatttggag
2601 ttgaccctaa gatacaacaa ctcgtcgagc ggtacttcga cgatcttacg
2651 gtaagtgccc aactccaaag tgtgaaggtg acatctccac atctgcaatc
2701 aatcctcctc tccattccgg agaacaactc gcacaacgaa tattaattac
2751 caaatcttag ccggatttgg gatagggttt atcgtaagta ttccctgtac
2801 attagctctc acgtactttg tttacaataa agtttcagac accactagag
2851 aggtggtgaa tgaattcagt aggccgtaga ggacctagaa gagcaaacaa
2901 tggcacaaga aggcggcgcc gtagagcaat tcggccagtg gttgtggtcc
2951 aatccaatcg agcaggaccc agacgacgaa atgctagacg cgcaagagga
3001 agaaggccaa attctgtatt tggaccaaaa cgcggggctg aggtattcgt
3051 attctcagtc gacaacctta aagccaattc ctccgggatc atcaaattcg
3101 gtcccgattt atcgcaatgc ccagcggttt cagacggagt acttaagtcc
3151 taccacaatt acaagatctc aagtgtcaac gttgagttta agtcacacgc
3201 gtcctcaact acgtccggcg ctatgtttat tgaactcgac acctcgtgca
3251 agcaatcagc cttggctagc tacattaact cattcaccat cagcaaatct
3301 gcctcaaagt ccttcaaagc gacggagatt ggagggaccc aattccaggc
3351 atcctcggtg aatcagttct ttctactata taaagccaat ggcaccacga
3401 gtgacactgc aggacagttc atcatcaaac ttgaaataca tctgatgact
3451 gccaaatagg tagactcctc aacaccggaa cctacacctg caccagcccc
3501 acaaccaacc ccacaacccg cacctgaacc aacacctgca cctgccccca
3551 agcgcttctt tgagtacatc ggtactccta tgggcgtcat ttcaacacgt
3601 gaaaatactg acagtatatc tgttagtcag ttgggtggac aatctatgca
3651 gtatattgaa aatgagaaat gtgagaccag aaccattgat tccttttgga
3701 gcactaacaa caacgtagca gcgcaagctg ctttcgttta tccagtgcca
3751 gaagggtctt acagtgtaaa catttcttgt gagggccttc aatccgttga
3801 ccacatcggt ggcaacgaag atggatattg gattggcatt attgcctatt
3851 ccaattcatc cgatgacaat tggggaatag gaaattacag agggtgtagt
3901 tttaaaaatt atttggcaac aaacacttgg agacctggtc acaaagatct
3951 caagctcaat gattgccaat tcacaggcgg acaaatagtt gaaagggatt
4001 ccatcatatc atttcacgtg gaagctacag gcactgatgc ctgtttctat
4051 ttgatggccc caaaaacaat gaaaaccgac aaatacaact atgttgtctc
4101 gtatggagga tatacaaaca agagaatgga gtttggcacc atatcagtaa
4151 cctgtgatga atccgatgtt gaggcaatac gcattgcgaa acactccgca
4201 accccaaacc gtgctaacca tatcttggtt agcgagcgat atcaagacgt
4251 attacccact attgaaaatc aaggactgtg tgatgtggaa actcccggtc
4301 aagaaacaag tatagtggaa gaggatgaca aacaatctgt ttctaccgaa
4351 cctgaaatag ctgttaagga atacgaagct gctgttgctg agattcctga
4401 cgctgaagag gatgtgttgc cctctaagga acagctgtcg tccagacctg
4451 tggatacatc cggtaacacc ataccaagaa ccaaggaacc cgaagtactt
4501 ggcacctacc agggacaaaa catttaccct gaagatgtac caccagctgc
4551 ccgacaagcg ctacgtgaag cagccagagc cccttccacc atgttatatg
4601 acaaagcccc taagggagct aaatcaattt tatctcggtt tgtggaaggt
4651 aataggtcca aaacaacccc agctgctccc tctgtgtcaa caacttcaaa
4701 tatgacgagg gaacaactta aagagtatac tcgtattagg aatagtttag
4751 gtgtaacagc cgcaaaggag tacaaggcgc aattacagtg aagacaaaca
4801 ccactcacaa ctgccggatc ctgggaaaca ggcagaactt aggttcgtaa
4851 gctcgggtga ctggaaggtg ggctgtcaac ccatcaccaa ctcaccgtcg
4901 tatcaccgtt gtgtggccga tgaatgacat tcatgttatc gctgtttgtg
4951 tactcgctac aaccgtttta accggcttcg ccgctgttgt aggttgttgc
5001 ttcggctgtg ttcgaaccct taatgcactt tgttctgtgt aaagtgcacc
5051 caaaaatatc ggggagcttc ggctcagtga gaggattaac gaccctcaga
5101 aaaggaaggt cttggcggac ttgaataatc cgctatagga caagtggaaa
5151 cctaccaccg atcaaataag gtagcttgct tctgagctgt acacagtccc
5201 tgcgaaaccg gggtaaacaa ctataatcac ccaattcgat gaaacgagag
5251 tggaggtgac ggggtgggtg acctcgtgat gtacacccga tcgtcaggtt
5301 tgaagacgtt aaaacacgac gagatgggaa cactcgttaa aagttcctcg
5351 gctgatacac ccagtcgacc gaaacagttt ggcataccct tgatacggaa
5401 caagggtcct tgggagccac tacctgtgat gcaaggtagg gtaagagtct
5451 tagcaagctc tgtgcccggg gatggacata aaccatagca ctccaactgg
5501 atatcggacg tcggtttctc gacactaggt gaaacgtgcc actggcctgt
5551 ttcaagcaat ctagctctgc ttgaaacagt atttcatggg agcaattcta
5601 tggggggact ggattctgac tgccgacact cgcaagagaa gttcggcatc
5651 cc