Sequence of DPV Barley yellow dwarf virus-PAV
Barley yellow dwarf virus-PAV isolate 06KM25 RNA-dependent RNA polymerase, P1, aphid transmission protein, coat protein, movement protein, and P6 genes, complete cds.
ACC No: EU332333
Dated: 2011-07-07 | Length: 5660 | CRC: -300403922
ID EU332333; SV 1; linear; genomic RNA; STD; VRL; 5660 BP.
XX
AC EU332333;
XX
DT 22-JAN-2008 (Rel. 94, Created)
DT 07-JUL-2011 (Rel. 109, Last updated, Version 2)
XX
DE Barley yellow dwarf virus-PAV isolate 06KM25 RNA-dependent RNA polymerase,
DE P1, aphid transmission protein, coat protein, movement protein, and P6
DE genes, complete cds.
XX
KW .
XX
OS Barley yellow dwarf virus-PAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RC Publication Status: Online-Only
RP 1-5660
RX PUBMED; 21326861.
RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.;
RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf
RT virus-PAV";
RL PLoS One 6(2):E16896-E16896(2011).
XX
RN [2]
RP 1-5660
RA Liu S., Wang X., Liu Y., Zhou G.;
RT "Population genetic diversity of BYDV-PAV from China";
RL Unpublished.
XX
RN [3]
RP 1-5660
RA Liu S., Wang X., Liu Y., Zhou G.;
RT ;
RL Submitted (07-DEC-2007) to the INSDC.
RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of
RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China
XX
DR RFAM; RF00434; BTE.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5660
FT /organism="Barley yellow dwarf virus-PAV"
FT /host="oat"
FT /isolate="06KM25"
FT /serotype="PAV"
FT /mol_type="genomic RNA"
FT /country="China:Kunming"
FT /db_xref="taxon:12040"
FT CDS join(140. .1156,1156. .2742)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp; P1-P2 fusion created by -1 ribosomal
FT frameshift"
FT /db_xref="GOA:B0FL06"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR013674"
FT /db_xref="UniProtKB/TrEMBL:B0FL06"
FT /protein_id="ABY73697.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWIDF
FT FLKSRGGVYAPPSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYVKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE
FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLSADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL
FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL
FT VAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGYCKTYPAQLLANSYSA
FT GKRAMYHKAIASLKTVPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR
FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS
FT EQALKWEHGIYNGIFGDSELALALEHQITNNIKMFVEDKMLRFRVRGHRMSGDINTSMG
FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK
FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL
FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTFEDTPITNHSRM
FT SYWESFGVDPKIQQIVERYYDNLTVSAQLQSVKVTTPHLQSILLSIPENHSQNDY"
FT CDS 140. .1159
FT /codon_start=1
FT /product="P1"
FT /note="ORF1"
FT /db_xref="GOA:B0FL07"
FT /db_xref="InterPro:IPR013674"
FT /db_xref="UniProtKB/TrEMBL:B0FL07"
FT /protein_id="ABY73698.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWIDF
FT FLKSRGGVYAPPSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYVKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNARAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE
FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETVKLKNSTLSADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF"
FT CDS 2856. .4808
FT /codon_start=1
FT /transl_except=(pos:3456. .3458,aa:OTHER)
FT /product="aphid transmission protein"
FT /note="P3-P5 fusion created by ribosomal read-through of
FT the ORF3 stop codon"
FT /db_xref="GOA:B0FL08"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:B0FL08"
FT /protein_id="ABY73702.1"
FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASATTAGAIFVELDTACKQSALASYINSFTISRTASKVFRAEAINGKEF
FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVHLMTAKXVDSSTPEPKPAPEPTPTPQPT
FT PAPQPAPEPTPAPAPKRFFEYIGIPTGTISTRENSDSISVSKLGGQSMQYIENEKCETK
FT VIDSFWSTNNYVSAQAAFVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS
FT SGDNWGVGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGT
FT DACFYLMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAERITRHAKTPIR
FT SKHILVSEQYEQPLPTIIDQGLCDVQTPEQEQTLVDEEDKQTVSTEPDIALMEYEAATA
FT EIPDAEEDVLPSKEQLSSKPVDTSGNKIPKPKEPEVLGTYQGQNIYPEDVPPIARQKLR
FT EAANAPSTLLYEKTPKKSNNFLTRFVDANRSPTTPAAPTVSTVSNMTREQLAEYTRIRK
FT SLGLTAAKEYKAQFQ"
FT CDS 2856. .3458
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3; P3"
FT /db_xref="GOA:B0FL09"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:B0FL09"
FT /protein_id="ABY73699.1"
FT /translation="MNSVGRRGPRRANQNGTRRRRRRTVRPVVVVQPNRAGPRRRNGRR
FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI
FT TSIRVEFKSHASATTAGAIFVELDTACKQSALASYINSFTISRTASKVFRAEAINGKEF
FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVHLMTAK"
FT CDS 2899. .3360
FT /codon_start=1
FT /product="movement protein"
FT /note="P4; ORF4 translated via a leaky scanning mechanism"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:B0FL10"
FT /protein_id="ABY73700.1"
FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA
FT GLRYSYSQSTTLKPTLPGQSNSALVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL
FT RPALSLLNSTPRANNQPWLATLIPSQSAGPPQRSSEPKRLTGRNSRNQR"
FT CDS 4915. .5040
FT /codon_start=1
FT /product="P6"
FT /note="ORF6; highly variable sequence"
FT /db_xref="InterPro:IPR009426"
FT /db_xref="UniProtKB/TrEMBL:A5A2Q5"
FT /protein_id="ABY73701.1"
FT /translation="MDDLHVIAVCIFALTVLTGLGAVIGCCAGCLLPPPSFRSSV"
XX
SQ Sequence 5660 BP; 1673 A; 1364 C; 1374 G; 1249 T; 0 other;
eu332333 Length: 5660 07-JUL-2011 Type: N Check: 7611 ..
1 tgaagattga ccatctcaca aaagctgcta cgtgcttgta gcacactaca
51 cactcgtttt gtattcgaga agtagttgca acaacggttc ccttattgcc
101 tgacaagcta agggccaccc ttctatcccc accgccatca tgttcttcga
151 aatacttata ggagctagcg ctaaggcggt aaaagacttc atcagtcatt
201 gttactctcg tttgaaatca atatattatt cttttaaacg atggctgatg
251 gagatatctg ggcagtttaa ggcccatgac gcctttgtca acatgtgctt
301 cgggcacatg gctgacattg aggacttcga ggcagagctc gctgaggagt
351 ttgcagagag ggaggatgag gtggaagagg caagaagcct cttgaaactg
401 ctggtcgccc aaaaatctaa aactggggtg accgaggctt ggatcgactt
451 cttcttgaag tcgagaggtg gcgtctatgc gccaccttcc tgcgagccta
501 ccaggcagga gctagaagtc aagagcgaga agctcgaaaa acttctagaa
551 gaacagcacc aattcgaggt gcgagcggcc aagaaatacg ttaaggaaaa
601 gggccgcggc ttcatcaact gctggaacga cttgcgaagt cgtctcaggc
651 tggtgaagga cgtcaaggac gaggcgaagg acaacgctag agctgctgcc
701 aagatcggag cagaaatgtt cgcccccgtt gacgtgcaag acctatacag
751 ctttacagag gtcaagaagg tggagaccgg cctcatgaaa gaggtcgtga
801 aagagagaaa cggcgaagaa gagaaacacc tcgagcccat catggaagag
851 gtgaggtcca tcaaagatac cgccgaagcc agggacgctg cctccacctg
901 gataacagag acagttaagc tgaagaactc tacgcttagc gcagatgaat
951 tgtctctggc caccatcgcc cgttacgttg aaaacgtagg ggacaaattc
1001 aaactcgaca ttgctagcaa gacatatcta aagcaagtcg catcgatgtc
1051 tgtgccaatt ccaactaaca aggacattaa attaaagatg gtgctgcaga
1101 gtcctgaagc acgtgccagg cgggaacgca tggacgtgct tgactctgtg
1151 ggtttttaga ggggctctgt accgcctctg gttttgagag cccattcccc
1201 attctcgggc tgccagagat tgcggtcaca gacggagccc ggctccgtaa
1251 ggttagtagt aatattagat acctcagcca aacccaccta ggtcttgtat
1301 ataaggcgcc aaatgcctcc ctgcacaatg cgcttgtagc agtggagaga
1351 agagttttta cagtaggaaa gggggacaaa gcaatctacc ccccccgccc
1401 agagcatgac attttcactg atacaatgga ttacttccaa aaatccatta
1451 tagaagaggt gggatactgc aagacatatc cagcgcaact cctggctaac
1501 agctatagcg caggaaaaag ggccatgtat cacaaagcca ttgcatcttt
1551 gaaaactgtc ccatatcatc agaaggatgc aaatgtacaa gctttcctga
1601 agaaggaaaa acattggatg accaaggaca tcgccccccg attgatttgc
1651 ccccgcagca agcggtataa catcatccta ggaactcgtt taaaattcaa
1701 cgagaagaag atcatgcacg ctatcgatag tgtgttcgga tcccccactg
1751 tactttctgg ctatgacaac tttaaacaag gaagaatcat agccaagaag
1801 tggcaaaagt ttgcatgccc cgtcgccatc ggcgtggatg ctagccgctt
1851 tgaccaacac gtgtcagagc aggcgcttaa gtgggaacac gggatataca
1901 atgggatctt cggagacagc gaactggctc ttgcacttga acaccaaatc
1951 accaacaaca tcaagatgtt tgttgaagat aaaatgctta ggttcagggt
2001 gagaggccat agaatgtccg gtgacattaa taccagcatg ggaaacaagc
2051 tcataatgtg cggcatgatg catgcatatt tcaagaagct gggtgttgaa
2101 gctgaacttt gcaacaacgg agacgattgt gtcatcatca ctgatagagc
2151 caatgagaag ctctttgacg gcatgtacga ccatttcctc cagtatggct
2201 tcaacatggt gactgaaaaa ccagtttacg aactggagca attggagttt
2251 tgccagtcaa aaccggtctc tattaatgga aagtatagaa tggtaagaag
2301 gcccgatagc ataggcaaag acagcacaac actactgagc atgctcaacc
2351 aatccgacgt caagagctac atgtcggctg tggctcagtg tggtttggtg
2401 cttaacgctg gagtacccat acttgaaagt ttctataaat gcctatatag
2451 aagctcaggg tacaagaaag tgagtgagga attcatcaaa aacgtcattt
2501 cgtatggaac agatgagaga ttacaaggta gacgtacctt tgaagacaca
2551 cctatcacta atcatagtag gatgtcctac tgggaatcat tcggagttga
2601 ccctaagata caacaaattg tcgagcggta ctacgacaat cttacggtga
2651 gtgcccaact ccagagtgtg aaggtgacta ctccacatct gcaatcaata
2701 ctactttcca taccggaaaa ccactcacaa aacgactact aattaccaaa
2751 tcttagctgg gtttggaata gggtttatag tttctattcc ctgtacatta
2801 gctctctcct actttatcta taataaagtt tctgacacca ctagggaggt
2851 ggtgaatgaa ttcagtaggc cgtagaggac ctagacgcgc aaatcaaaat
2901 ggcacaagaa ggaggcgccg tagaacagtt cggccagtgg ttgtggtcca
2951 acccaatcga gcaggaccca gacgacgaaa tggtcgacgc aagggaagag
3001 gaggggcaaa tcctgtattt agaccaacag gcgggactga ggtattcgta
3051 ttctcagtcg acaaccttaa agccaactct tccggggcaa tcaaattcgg
3101 ccctagtcta tcgcaatgcc cagcgctttc agacggaata cttaagtcct
3151 accaccgtta caagatcaca agtatccgtg ttgagtttaa gtcacacgcg
3201 tccgcaacta cggccggcgc tatctttgtt gaactcgaca ccgcgtgcaa
3251 acaatcagcc ctggctagct acattaattc cttcacaatc agcaggaccg
3301 cctcaaaggt cttcagagcc gaagcgatta acgggaagga attccaggaa
3351 tcaacgatag accagttttg gatgctctac aaggccaatg gaaccaccac
3401 tgacacggca ggacaattca ttatcacgat gagtgtccac ttgatgacgg
3451 ccaaataggt agactcctca acaccggaac cgaaacctgc accagaacct
3501 acaccaaccc cgcagccaac gccagctcca cagcccgcac ccgaaccgac
3551 tcctgcacca gcccctaaaa gattctttga gtatatcggc attccaaccg
3601 gtacaatctc aacaagagaa aactctgata gtatttctgt cagcaagctc
3651 ggtgggcaat cgatgcaata catagagaat gagaagtgtg aaacaaaggt
3701 cattgactcc ttctggagca ctaacaacta cgtgtctgca caggcagcct
3751 tcgtttaccc agtgccagaa ggatcataca gtgtgaacat ttcgtgcgaa
3801 ggcttccaat ccgttgacca cataggaggc aacgaggatg gttattggat
3851 tggtttaatt gcctactcca attcgtcagg agacaattgg ggggtaggca
3901 actacaaagg gtgcagtttc aagaacttct tggcaaccaa tacttggaga
3951 ccaggccata aggatctcaa gttgaacgat tgccagttca cagatggaca
4001 aatagttgag agggatgccg tgatgtcttt ccatgtggaa gcgacaggta
4051 ctgacgcctg tttctatctc atggctccca aaacaatgaa aactgacaaa
4101 tacaactatg ttgtctcgta tggagggtac acaaacaaaa ggatggaatt
4151 tggtaccata tctgtgacat gtgatgaatc cgatgttgag gcagaacgca
4201 taacaaggca cgctaaaaca cccatacgtt ccaaacatat tcttgtgtct
4251 gaacagtatg agcagccttt acccaccata atcgatcaag gcttgtgtga
4301 tgtgcaaact cccgagcaag aacaaacact ggtggatgaa gaagacaaac
4351 agactgtttc cacagaacct gatatagcac tcatggaata tgaagctgca
4401 acagccgaaa ttccagatgc tgaagaggat gttttgccct ccaaggaaca
4451 gctgtcttct aaaccggtgg acacatccgg caacaaaata ccaaaaccca
4501 aggaacctga agtacttgga acataccagg gacaaaatat ttaccctgaa
4551 gacgtgccac caattgcgcg gcagaagcta cgcgaagccg caaatgcacc
4601 ctccacatta ctctacgaga aaactcccaa gaagagcaac aatttcttga
4651 ctcgttttgt ggatgcgaat aggtccccta caactccagc tgccccaaca
4701 gtgtcaactg tatcaaacat gacaagggaa cagcttgcgg agtacactag
4751 aattaggaaa tcccttggac tcacagcagc gaaggaatac aaggcgcaat
4801 ttcagtgaag gtaacaccac tagcacaaat cggatcctgg gaaacaggca
4851 gaactacggt tcataagctc gggtaggccg tcaacctacc gccgtatcgt
4901 attgtgtttg gccgatggat gacctccacg ttatcgccgt ttgtattttt
4951 gctctaactg tgttgacagg gttaggcgcg gtgatcggct gttgtgccgg
5001 ttgccttctc ccccctccct ccttccgctc ttctgtttaa gcaaaatctc
5051 tcggtctgtg cgagagaaac tcaaaaatat cggggagctt cagctcagtg
5101 aggggattaa cgacccccag taaaggctgg tcttggcgga cttgaataac
5151 ccgctataag acggagtggt aaccgccact gatcaaatgg tgaacatgct
5201 tctgtgttgt acactgcccc ggagcctacc gggttaacaa agctatccca
5251 ccagctcaat gaaatgagag cggagtgggc ggagtgggtg acttcgagat
5301 gtacacccga tcgtcaggat tgaagacgtt aaaactcgac gacctagtgc
5351 aagtcgttaa actgactagg gtggatacac cacacccggc ctaacttgta
5401 ggcataccca cgatacgaaa cgtgggtctc ttggagccac cgcctgtgat
5451 gcaaggtggg gtatgagtct tagcaagctc tgtgccagga gatggacaaa
5501 ccatagcaat cctgcaagtc atcttggcga accataggtg aaccgtgcca
5551 cgggcctgcc taccgaaagg aaaagcagta tccgacacag caatgtgttg
5601 ggggttacac ccttcggggt actcttaacg ctgacactcg aaagagcagt
5651 tcggcaaccc