Sequence of DPV Barley yellow dwarf virus-PAV
Barley yellow dwarf virus-PAV isolate 06ZZ5 RNA-dependent RNA polymerase, P1, aphid transmission protein, coat protein, movement protein, and P6 genes, complete cds.
ACC No: EU332336
Dated: 2011-07-07 | Length: 5664 | CRC: 1672831640
ID EU332336; SV 1; linear; genomic RNA; STD; VRL; 5664 BP.
XX
AC EU332336;
XX
DT 22-JAN-2008 (Rel. 94, Created)
DT 07-JUL-2011 (Rel. 109, Last updated, Version 2)
XX
DE Barley yellow dwarf virus-PAV isolate 06ZZ5 RNA-dependent RNA polymerase,
DE P1, aphid transmission protein, coat protein, movement protein, and P6
DE genes, complete cds.
XX
KW .
XX
OS Barley yellow dwarf virus-PAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RC Publication Status: Online-Only
RP 1-5664
RX PUBMED; 21326861.
RA Wu B., Blanchard-Letort A., Liu Y., Zhou G., Wang X., Elena S.F.;
RT "Dynamics of molecular evolution and phylogeography of Barley yellow dwarf
RT virus-PAV";
RL PLoS One 6(2):E16896-E16896(2011).
XX
RN [2]
RP 1-5664
RA Liu S., Wang X., Liu Y., Zhou G.;
RT "Population genetic diversity of BYDV-PAV from China";
RL Unpublished.
XX
RN [3]
RP 1-5664
RA Liu S., Wang X., Liu Y., Zhou G.;
RT ;
RL Submitted (07-DEC-2007) to the INSDC.
RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of
RL Agricultural Sciences, West Yuanmingyuan Road No.2, Beijing 100094, China
XX
DR RFAM; RF00434; BTE.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5664
FT /organism="Barley yellow dwarf virus-PAV"
FT /host="wheat"
FT /isolate="06ZZ5"
FT /serotype="PAV"
FT /mol_type="genomic RNA"
FT /country="China:Zhengzhou"
FT /db_xref="taxon:12040"
FT CDS join(142. .1161,1161. .2747)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp; P1-P2 fusion created by -1 ribosomal
FT frameshift"
FT /db_xref="GOA:B0FL24"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR013674"
FT /db_xref="UniProtKB/TrEMBL:B0FL24"
FT /protein_id="ABY73715.1"
FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK
FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD
FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW
FT NDLRSRLQLVKSVKDEAKDNVKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR
FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV
FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF
FT LEGLCTASGFESPFTILGLPEIAVTDGARLRKVSSNINYLTQTHLGLVYKAPNASLHNA
FT LVAIERRVFTVGKGDSAIYPPHPEYDIFSETMGYFAESIVTKVGYCKTYTPQQLALSYS
FT AGKRAQYFKAIESLKKEPYQVKDSNVQAFLKKEKHWMTKAIAPRLICPRSKRYNIILGT
FT RLKFNEKKIMHAIDGVFGSPTVLSGYDSFTQGRIIASKWQKFASPVAIGVDASRFDQHV
FT SEQALKWEHGIYNGIFGDNELALALEHQLVNNIKMFVEDKMLTFKVKSHRMSGDINTSM
FT GNKLIMCGMMHAYLKKLGVEAELCNNGDDCVIITERANEHLFSGMYDHFLKYGFNMVTE
FT TPVYELGELEFCQSKPVRISGNYRMVRRPDCIGKDSNTLLSMRNESDVKSYMSAVAQCG
FT LVLNAGVPILESFYRCLYRSSGYKKVSEEYIKNVISYGTDERLQGRRTFEETPITTDNR
FT MSYWESFGVDPKIQQLVERYYDDLTVSAQLQSVKVTSPHLQSILLSIPENNSHNEY"
FT CDS 142. .1164
FT /codon_start=1
FT /product="P1"
FT /note="ORF1"
FT /db_xref="GOA:B0FL25"
FT /db_xref="InterPro:IPR013674"
FT /db_xref="UniProtKB/TrEMBL:B0FL25"
FT /protein_id="ABY73716.1"
FT /translation="MVFFEMLIGASVKAVKDFISHCYSRLKSIYYSFKRWLLEISGQFK
FT AHDAFVNMCFGHIADIEDFEAELAEEYAEKEEEIEEARSLLRLLTAQKSKSGVDEAWTD
FT FFLKSRGGVYAPLNCEPKSIELDAKADKLEKLLEDMHLFEVRAAKTYIKEKGRGFINCW
FT NDLRSRLQLVKSVKDEAKDNVKAASKIGVEFSAPTNIADLYTFTEVTKVETGLTKETTR
FT VVNGEEETSTVPLVEDVRKIKDDEVSRESASNWIREVIKLKNSTLSADELSLATIARYV
FT ENLGEKYKLDIASKTYLKQCAMISVPIPSQKDIKTKMVIQSPAARALRERVAVLDSQGF
FT "
FT CDS 2861. .4801
FT /codon_start=1
FT /transl_except=(pos:3458. .3460,aa:OTHER)
FT /product="aphid transmission protein"
FT /note="P3-P5 fusion created by ribosomal read-through of
FT the ORF3 stop codon"
FT /db_xref="GOA:B0FL26"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:B0FL26"
FT /protein_id="ABY73720.1"
FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA
FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS
FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ
FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAKXVDSSTPEPKPTPAPTPAPTPEP
FT KPEPTPAPPPKRFFEYVGTPIGVISTRENTDSISVSKLGGQSMQYIENEKCETKTIDSF
FT WSTNNNVSAQAAFVFPVPEGSYSVNISCEGLQSVDHIGGNEDGYWIGLIAYSNSSGDNW
FT GVGNYKGCVFTNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEASGKDACFY
FT LMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEALRMTRHSECPTRVNNIL
FT IDEGYCQPLSTITDQGLCDVQTPGQDQEVVEEDRQTVSTESDIALKEYEAATAEIPDAE
FT EDALPSREQLSSKPVDTSGEEIPKPRPPSNEVLGVYQGQPIYAEDVPPGTRQKLRDAAK
FT APSTLLYDKTPKRSKSILSRFIEGNRSSVESAAPSTATTSNLTREQLREYTRIRNTLGL
FT TAAKEYKARLL"
FT CDS 2861. .3460
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3; P3"
FT /db_xref="GOA:B0FKK9"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:B0FKK9"
FT /protein_id="ABY73717.1"
FT /translation="MNSVGRRGPRRANNGTRRRRRRAIRPVVVVQPNRTGPRRRNARRA
FT RGRRPGSVFGPKRGAEVFVFSVDNLKANSSGILKFGPDLSQCPAVSDGVLKSYHNYKIS
FT SINVEFRTHASATTSGAMFIELDTSCKQSALSSYINSFTISKSASKSFRAAEIGGTQFQ
FT ATSVNQFFLLYKANGTTTDIAGQFIIRIELHLMTAK"
FT CDS 2901. .3362
FT /codon_start=1
FT /product="movement protein"
FT /note="P4; ORF4 translated via a leaky scanning mechanism"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:B0FKL0"
FT /protein_id="ABY73718.1"
FT /translation="MAHEGGAVEQFGQWLWSSPIEQDPDDEMLDAQEEEGQVLYLDQNA
FT GLRYSYSQSTTLRPTPPGSSNSVPIYRNAQRFQTEYLSPTTITRSQVSTLSLEHTRPPL
FT RRALCLLNSTPRASNQPYLATLTHSPSANPPQSPSAQRRLEGPSSRRHR"
FT CDS 4930. .5052
FT /codon_start=1
FT /product="P6"
FT /note="ORF6; highly variable sequence"
FT /db_xref="InterPro:IPR009426"
FT /db_xref="UniProtKB/TrEMBL:B0FL29"
FT /protein_id="ABY73719.1"
FT /translation="MDDLRIIALCALSSTILFTVALVSSWCASCCKLIDAACSV"
XX
SQ Sequence 5664 BP; 1598 A; 1385 C; 1358 G; 1323 T; 0 other;
eu332336 Length: 5664 07-JUL-2011 Type: N Check: 5526 ..
1 tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca
51 cactcgtttt gtaatcgaga agtagttgcg acagagtcct acagttgcct
101 gacacgcctg tagccccctt cttccccttt cattcgccac catggtgttc
151 tttgagatgc ttatcggtgc cagcgtaaag gctgtcaagg acttcatcag
201 ccactgctat tctagactaa agagtatata ctactctttt aagagatggc
251 tgcttgagat atccgggcag tttaaggccc atgacgcctt tgtcaacatg
301 tgcttcgggc acattgctga catcgaagac tttgaggcgg agctcgctga
351 ggagtacgcc gagaaggagg aggagatcga ggaagcacga agcttgctcc
401 gcttgctaac tgcccagaag tctaaatctg gggtggatga ggcttggacc
451 gacttctttt tgaagtcgag aggcggcgtt tatgcgccac ttaactgcga
501 gccgaaatcc atagagcttg atgccaaagc ggacaagttg gaaaagctcc
551 ttgaggacat gcaccttttc gaggtgcgcg cggccaagac ctacatcaag
601 gaaaagggcc gtggattcat caattgctgg aacgaccttc gatcaaggtt
651 gcagttggtg aagtcagtca aagacgaggc caaggacaat gtcaaagcgg
701 cctccaagat tggtgtggag ttttctgccc ccaccaatat tgctgatctc
751 tacacattca ctgaggttac aaaagtagag acaggtctta ccaaggagac
801 gactagggtt gtcaacggag aggaggagac ttccaccgta cccctggttg
851 aagacgtccg gaaaatcaag gacgatgaag tcagtaggga gagtgcctcc
901 aattggatca gggaggtaat caaattgaaa aactccacac tttccgctga
951 cgagctttcc ctggcaacca tcgccaggta tgtagaaaat ttaggggaaa
1001 aatacaaact cgacattgcc tcaaaaacat atcttaagca atgtgcgatg
1051 atttctgtgc caatcccctc ccaaaaagac ataaaaacaa agatggtgat
1101 ccaaagccct gctgcccgtg cgcttcgtga gcgcgtggca gttcttgatt
1151 cccagggttt ttagaggggc tctgtaccgc ctccggtttt gaaagcccat
1201 ttaccattct tggcttaccg gagatagcgg tcacagacgg agcccgactc
1251 cgtaaggtta gtagtaatat taattacctt acccagaccc atctaggcct
1301 tgtatataaa gcacccaatg catccctgca caacgcgctc gtagccatcg
1351 aaaggagagt gtttacagta ggaaaggggg attctgctat ctaccccccc
1401 cacccggaat atgatatttt ctcagagaca atgggctact ttgctgagtc
1451 cattgtcacc aaggtgggat actgcaagac atacacccct cagcaactgg
1501 ctcttagtta cagtgcaggg aagagggccc agtatttcaa agccattgag
1551 tccttgaaga aggaacccta tcaagttaag gactcaaacg tgcaggcatt
1601 cctcaagaag gagaaacact ggatgaccaa agccatcgcc ccgcgtctga
1651 tttgcccccg ctctaagcgg tacaacataa tcctaggaac tcgtttgaaa
1701 ttcaacgaga agaagatcat gcatgccatt gacggtgtgt ttggatcccc
1751 cactgtgctt tcaggctatg atagcttcac tcaaggcaga atcatagcca
1801 gtaagtggca aaagtttgca tcacccgttg ctataggtgt tgatgctagc
1851 cgctttgacc aacacgtgtc tgagcaggcg cttaagtggg aacacgggat
1901 atacaatggc atttttggcg acaatgaatt ggcccttgct ctcgaacatc
1951 agcttgtaaa taatattaag atgttcgtcg aggacaagat gttaaccttc
2001 aaagttaaga gccatagaat gtcaggggac attaacacca gcatgggcaa
2051 caagcttatc atgtgtggca tgatgcatgc ttacttaaag aagctgggtg
2101 ttgaagcaga actttgtaac aatggagatg attgtgtcat cataactgaa
2151 agggctaatg aacacctttt cagtggaatg tatgaccatt tccttaaata
2201 cggcttcaac atggtgacgg aaaccccggt ttacgaactc ggggaacttg
2251 aattttgcca atccaaaccc gtcagaatta gtggcaatta tagaatggtc
2301 cgtaggcccg attgcatagg aaaagatagc aacacactct tgagcatgcg
2351 caatgaatcc gacgtcaaaa gctatatgtc ggctgtggct cagtgtggtc
2401 tcgttttgaa tgcgggtgta cccatactcg aaagcttcta ccgctgccta
2451 tacagaagct cggggtacaa gaaagtaagt gaggaataca tcaaaaatgt
2501 catatcatat ggaacagatg aacgccttca gggtagacgt acctttgagg
2551 agacacctat caccactgac aatcgaatgt catattggga atcatttgga
2601 gttgacccta agattcaaca acttgtcgag aggtactacg acgatcttac
2651 ggtaagtgcc caactccaaa gtgtgaaggt gacatctcca catctgcaat
2701 caatcctcct ctccattccg gagaacaact cgcacaacga atattaatta
2751 ccaaatctta gccgggtttg ggatagggtt tatcactagt attccctgta
2801 cattagctct cacgtacttt atttataata aagtttcaga caccactaga
2851 gaggtggtga atgaattcag taggccgtag aggacctaga agagcaaata
2901 atggcacacg aaggcggcgc cgtcgagcaa ttcggccagt ggttgtggtc
2951 cagcccaatc gaacaggacc cagacgacga aatgctagac gcgcaagagg
3001 aagaaggcca ggttctgtat ttggaccaaa acgcggggct gaggtattcg
3051 tattctcagt cgacaacctt aaggccaact cctccgggat cctcaaattc
3101 ggtcccgatt tatcgcaatg cccagcggtt tcagacggag tacttaagtc
3151 ctaccacaat tacaagatct caagtatcaa cgttgagttt agaacacacg
3201 cgtccgccac tacgtcgggc gctatgttta ttgaactcga cacctcgtgc
3251 aagcaatcag ccctatctag ctacattaac tcattcacca tcagcaaatc
3301 cgcctcaaag tccttccgcg cagcggagat tggagggacc cagttccagg
3351 cgacatcggt gaatcaattc tttcttttat acaaggcaaa tggcactaca
3401 actgatattg cagggcagtt catcatcaga attgagcttc atttgatgac
3451 tgccaaatag gtagactcct caacaccgga accgaagccc acaccagccc
3501 caacacctgc cccaacacct gagccaaaac cagagccaac acctgcacct
3551 ccccccaagc gtttctttga gtatgttggg actccgatag gggtcatatc
3601 tactcgagag aacaccgaca gcatatcggt gtccaagctc ggtggccagt
3651 cgatgcagta tatagaaaac gagaagtgtg aaactaaaac catcgactcc
3701 ttctggagca caaacaacaa cgtttcggca caagctgcct tcgtttttcc
3751 agtgccagaa gggtcgtaca gtgtgaacat ctcgtgtgaa ggtttacaat
3801 ccgttgacca cattggtggc aacgaggatg gctattggat tgggctcatt
3851 gcctactcca actcatcagg cgacaactgg ggtgtaggta actataaagg
3901 gtgtgtgttc acaaactttc tggcaacaaa cacctggaga ccaggacaca
3951 aggatttgaa acttaacgat tgccagttca cagatggaca aatagttgaa
4001 agggatgcag ttatgtcttt ccacgtagag gcctctggca aagatgcctg
4051 cttctacctg atggctccca aaacaatgaa aacagacaag tacaactatg
4101 ttgtctcgta tggagggtac acgaacaaaa gaatggagtt cggtaccatt
4151 tctgtaacat gtgatgaatc cgatgttgag gcactccgca tgacccggca
4201 ctctgagtgc cccacccgcg taaataacat actaattgat gagggatatt
4251 gtcaacctct ttccaccata accgaccaag ggctgtgtga tgtgcaaact
4301 cccggccaag accaagaggt ggttgaggaa gacagacaaa ctgtttccac
4351 tgaatctgat atagcgctca aggaatacga agcggccacc gctgaaattc
4401 ctgacgctga agaggatgct ttgccctctc gggaacaact ctcatccaaa
4451 ccagttgaca cgtccgggga ggagatcccc aaacccagac ccccaagcaa
4501 tgaggttctg ggtgtttacc aaggacagcc catctatgct gaagacgtgc
4551 cacctggtac aaggcaaaag ctacgtgatg ccgccaaagc accttctacc
4601 ctattgtacg acaagacccc aaaacggtcc aaatctattt tgtccaggtt
4651 catagaaggg aataggtcct ctgtagaatc tgctgccccc tctaccgcta
4701 ctacatccaa tctaaccagg gagcagcttc gggaatatac ccgcattagg
4751 aataccctag gtttaacagc tgcaaaagag tacaaggctc gtcttttgtg
4801 aagacaacac cactcgcaca aatcggatcc tgggaaacag gcagaacttc
4851 ggttcgtaag ctcgggtgac tggaaggtgg gctgtcaacc caccaccgac
4901 tcaccgccgt atcgtattgt gtgtggccga tggatgatct tcgcattatc
4951 gccctctgtg ctctgtcatc aactatactg ttcaccgttg cgttggtgag
5001 tagttggtgt gcaagctgtt gtaagctcat agacgcagct tgttctgtgt
5051 aagctgcgac caaaaatatc ggggagcttt tgctcagtga gaggattaac
5101 gaccctcggt aatggctggt cctggcaggc ctgaataacc cgctatagga
5151 caactggaaa cccaccagtg atcaaataag gtagcttact tctgagctgt
5201 acactgtccc tgcgcaatcg gggtaaacaa ctataaccac ccaactcgat
5251 gaaatgagag tggaggtggc ggagtgggtg acttcgtgat gtacacccga
5301 gcgtcaggtt tgaagacgcc ataaaacaca acgagatgag aacctcgtta
5351 taaaagttcc tcggctgata cacccagtcg actggacctg ctggcatacc
5401 cttgatacga aacaagggct tctaagagcc actacctgtg atgcaaggta
5451 gggtaagagt cttagcaacc tctgtacttg gaagtggaca taaaccatag
5501 caatccagca gcatcccaga agagagtttt cctcactagg tgaaaacgtg
5551 ccacgggcct gtttcaagca atctagctct gcttgagaca gtatctcata
5601 gaagcaattc tatgggggga ctggattctg actgccgaca ctcgcaagag
5651 aagttcggca tccc