Sequence of DPV Maize chlorotic mottle virus
Maize chlorotic mottle virus isolate Nebraska, complete genome.
ACC No: EU358605
Dated: 2008-04-22 | Length: 4436 | CRC: -1821371072
ID EU358605; SV 1; linear; genomic RNA; STD; VRL; 4436 BP.
XX
AC EU358605;
XX
DT 22-APR-2008 (Rel. 95, Created)
DT 22-APR-2008 (Rel. 95, Last updated, Version 1)
XX
DE Maize chlorotic mottle virus isolate Nebraska, complete genome.
XX
KW .
XX
OS Maize chlorotic mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Machlomovirus.
XX
RN [1]
RP 1-4436
RX PUBMED; 18365127.
RA Stenger D.C., French R.;
RT "Complete nucleotide sequence of a maize chlorotic mottle virus isolate
RT from Nebraska";
RL Arch. Virol. 153(5):995-997(2008).
XX
RN [2]
RP 1-4436
RA Stenger D.C., French R.;
RT ;
RL Submitted (19-DEC-2007) to the EMBL/GenBank/DDBJ databases.
RL CDPGRU, USDA-ARS, 9611 S. Riverbend Ave., Parlier, CA 93648, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .4436
FT /organism="Maize chlorotic mottle virus"
FT /isolate="Nebraska"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /virion
FT /db_xref="taxon:12138"
FT gene 118. .987
FT /gene="P32"
FT CDS 118. .987
FT /codon_start=1
FT /gene="P32"
FT /product="P32"
FT /note="hypothetical protein"
FT /protein_id="ACA57839.1"
FT /translation="MPSPCTYGDPTFNSRILEAVVADVLGGTEDDGGPSLEEWFDAQTL
FT SDYTNCATDPPMATVHTRENDIKSWTELSENFPDLVRYPESLVETLLDTEHECGHFYDA
FT PDSFQISVTAMFTDRCKCQSCDPNFQARSLSRALLGPLPESGDDAEWMEQAYTPDAELF
FT VNEPTDDPIPTTDCKRPIQPTWSVDVHSKQVDSDWGLSDSTNVTVCSASSSLLPAGRGG
FT IYFMCPRPEGIERVCLQVGAKIRSGAPNSGTITNLPGGTGYGTEWSDDGYETQWSDGPY
FT SIPSGLSD"
FT gene 137. .3034
FT /gene="P111"
FT CDS 137. .3034
FT /codon_start=1
FT /transl_except=(pos:1451. .1453,aa:OTHER)
FT /gene="P111"
FT /product="P111"
FT /note="RNA dependent RNA polymerase; read through product
FT of amber stop codon"
FT /protein_id="ACA57840.1"
FT /translation="MATLPSIHAFWKLWWPTFSEERKMTVVQALRNGLTRKLFQITQIA
FT QQILRWPPYIRERMTSSLGQSLVKTFQTLLGIRKALSRLCLTRNMNVDIFTMLLIPFKF
FT LSQLCSQIVASANHVIQTFRHGLSRGLCLARCRNPETMRSGWSKHTLQMQNCSSTSPLM
FT TPFQPQIVRDLSNPHGLWMSTRNKLTRTGGSAIQQTSRYVRLAVRFSLLAAGAYISCVL
FT ARKALKEYVYRWELKSDQELPTREQSQISQVEQAMEQNGAMMVMKLNGPTAPILSLQDC
FT LTKHVLVPEIVDEEGTVTQKEQSTFLIREFGPAVRNLVTLAKLEFGGIPKKTTANELTV
FT WRFLVRKCEHANMNPTDSRTAISMALPYVFMPCRTDVGRASIPLRDESIEICRQYRAQF
FT VEETPLRRVFNNPLSGKAWRNWVRHLGGLDDPALFQELKXGCLEEWLGVQSRRTRARHP
FT KLRSHFKDTRHKTRRVFRIAGLGNLYEFGVHNNSAVNLERGLMERVFYVKDDKGELVSC
FT PEPISGIFWKNLKGFRNSIVHHVGHRHPVSRETFLAYYTGPKRTMYEKAVNSLYEMPVS
FT YDDAKLKTFVKAEKINLTKKADPVPRVIQPRAPRYNVELGRYLRPVEHPIYHAIDKIWG
FT GPTIMKGYSVEQIGRHIENAFRSFTDPVAIGFDASRFDQHVSVEALRWEHSVYSRIYGY
FT PELLTQLLRWQIHNRGTAYASDGAFNYQVDGKRMSGDMNTSLGNCILATAITHDFVTKL
FT GIPARLINNGDDNVLICPAVEVGRVRQELYRHWLNYGFEVISEEPVYILEQVEFCQMRP
FT VFDGTQYTMMRDPRTTMSKDAYAVTPFNTPTAARRWMRAVGECGLSLTGGLPVKQEYYT
FT ALVKHGLDPKNIKQGKDFDSGLYYLSKLSNRKWQEVQESARYSFWLAFGYTPDEQRALE
FT EYFKSWTPTFEWSTTGILAEIPECLLLKYNPLPPT"
FT gene 137. .1453
FT /gene="P50"
FT CDS 137. .1453
FT /codon_start=1
FT /gene="P50"
FT /product="P50"
FT /protein_id="ACA57841.1"
FT /translation="MATLPSIHAFWKLWWPTFSEERKMTVVQALRNGLTRKLFQITQIA
FT QQILRWPPYIRERMTSSLGQSLVKTFQTLLGIRKALSRLCLTRNMNVDIFTMLLIPFKF
FT LSQLCSQIVASANHVIQTFRHGLSRGLCLARCRNPETMRSGWSKHTLQMQNCSSTSPLM
FT TPFQPQIVRDLSNPHGLWMSTRNKLTRTGGSAIQQTSRYVRLAVRFSLLAAGAYISCVL
FT ARKALKEYVYRWELKSDQELPTREQSQISQVEQAMEQNGAMMVMKLNGPTAPILSLQDC
FT LTKHVLVPEIVDEEGTVTQKEQSTFLIREFGPAVRNLVTLAKLEFGGIPKKTTANELTV
FT WRFLVRKCEHANMNPTDSRTAISMALPYVFMPCRTDVGRASIPLRDESIEICRQYRAQF
FT VEETPLRRVFNNPLSGKAWRNWVRHLGGLDDPALFQELK"
FT gene 2995. .3834
FT /gene="P31"
FT CDS 2995. .3834
FT /codon_start=1
FT /transl_except=(pos:3199. .3201,aa:OTHER)
FT /gene="P31"
FT /product="P31"
FT /note="read through of ocher stop codon"
FT /protein_id="ACA57842.1"
FT /translation="MSSSQIQSPPTDVARRQQTGTAVRSEDNHRNQLENIAVGKLTKSE
FT GAPAQQNVIIAKEVVINNHFNFNXAGVCVCRFVLASVVKEFNLGDFDLLDSVHLDEDTG
FT HRCRLSRAIGVLDRSDTKIPKDRHTQWQQVAGLPEVESSADVAWKQNPELFEPTRLSLD
FT PTRSETVPPLREQPAPCPKFCLQCQQQLLTRFSRFQCVQGLTSRLERRPDTLGRPNGWQ
FT HNHRCGIQLCSTLCVSLGRHSQQTPLADTFPWHSSPITCYQYPLGWRMLPGSCPQLQ"
FT gene 2995. .3201
FT /gene="P7"
FT CDS 2995. .3201
FT /codon_start=1
FT /gene="P7"
FT /product="P7"
FT /protein_id="ACA57843.1"
FT /translation="MSSSQIQSPPTDVARRQQTGTAVRSEDNHRNQLENIAVGKLTKSE
FT GAPAQQNVIIAKEVVINNHFNFN"
FT gene 3384. .4094
FT /gene="CP"
FT CDS 3384. .4094
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /note="structural protein of virion"
FT /protein_id="ACA57844.1"
FT /translation="MAASSRSTRGRKQRGRSVEAKSRAIRANPPVPRPNPQRNRPPPAG
FT TTCSMSEILLAVSATTADQILEIPVCAGIDFPAGTSPRYIGAAKWLAAQSQMWNTIVFN
FT SVRITWETFTADTTSGYISMAFLSDYMLSIPTGVEDVARIVPSATIALKNRGPSIVMPQ
FT NRTVFRCIQAGQFAALGSAADKQMYSPGRFIVAIPKASATQAVGQIKISYSVSYRGAAI
FT LQPALVPGPGLANH"
XX
SQ Sequence 4436 BP; 1198 A; 1114 C; 1110 G; 1014 T; 0 other;
eu358605 Length: 4436 22-APR-2008 Type: N Check: 6680 ..
1 aggtaatctg cggcaacaga ccccaacgcg ttagacacga ccttacagtt
51 gactcacgtc ttgcatcctg tgagagctct aacgtgggaa tttgcccctg
101 actggcaatc aggtttcatg ccctctccct gcacttatgg cgaccctacc
151 ttcaattcac gcattttgga agctgtggtg gccgacgttc tcggaggaac
201 ggaagatgac ggtggtccaa gccttgagga atggtttgac gcgcaaactc
251 tttcagatta cacaaattgc gcaacagatc ctccgatggc caccgtacat
301 acgcgagaga atgacatcaa gtcttggaca gagcttagtg aaaactttcc
351 agaccttgtt aggtatccgg aaagccttgt cgagactctg cttgacacgg
401 aacatgaatg tggacatttt tacgatgctc ctgattcctt tcaaatttct
451 gtcacagcta tgttcacaga tcgttgcaag tgccaatcat gtgatccaaa
501 ctttcaggca cggtctctct cgcgggctct gcttggcccg ttgccggaat
551 ccggagacga tgcggagtgg atggagcaag catacactcc agatgcagaa
601 ttgttcgtca acgagcccac tgatgacccc attccaacca cagattgtaa
651 gagacctatc caacccacat ggtctgtgga tgtccactcg aaacaagttg
701 actcggactg ggggctcagc gattcaacaa acgtcacggt atgttcggct
751 agcagttcgc ttctccctgc tggccgcggg ggcatatatt tcatgtgtcc
801 tcgcccggaa ggcattgaaa gagtatgtct acaggtggga gctaaaatcc
851 gatcaggagc tcccaactcg ggaacaatca caaatctccc aggtggaaca
901 ggctatggaa cagaatggag cgatgatggt tatgaaactc aatggtccga
951 cggcccctat tctatccctt caggactgtc tgactaaaca cgttctggtt
1001 ccagagattg tggacgaaga aggcacagta acacaaaaag aacagtccac
1051 ttttctcatc cgtgagtttg gtcctgccgt cagaaaccta gtgaccctcg
1101 caaagctaga attcggcgga attccaaaga aaaccacagc caatgaactt
1151 acggtttggc ggttcttggt acggaagtgt gaacatgcaa atatgaaccc
1201 aactgactcc cgtactgcca tttcaatggc cctgccatac gtgtttatgc
1251 cgtgtcgcac tgatgttgga agagcttcaa ttccactgcg tgatgaatcc
1301 attgaaatct gtcgccaata tcgcgcacaa tttgtggagg agacacccct
1351 acggcgagta ttcaacaacc cattgagcgg aaaagcatgg cgtaactggg
1401 ttaggcacct gggtgggctg gatgatccag ccctattcca ggagttgaaa
1451 taggggtgtc ttgaagagtg gcttggggtg cagtctcggc gcacacgtgc
1501 gcggcacccc aaactccgta gccactttaa agacacgaga cacaaaaccc
1551 gcagagtgtt ccggattgca ggtttgggca acctgtatga atttggagtc
1601 cacaacaact ctgcggtaaa cctggaacgt ggactaatgg agcgagtatt
1651 ttatgtgaaa gatgataagg gggaactcgt ttcatgccct gagcctatta
1701 gtgggatatt ttggaaaaac ttgaagggat tcagaaatag cattgttcac
1751 catgtgggac acagacatcc agtgtcacga gagacgtttc tcgcttacta
1801 tacagggcca aagcgcacca tgtatgagaa agcggtgaat tccctctacg
1851 aaatgcctgt ctcatacgac gatgctaaac tgaaaacatt tgtaaaagca
1901 gaaaagatca atctcactaa gaaagctgat cctgtaccac gtgtgatcca
1951 gccccgtgct ccccggtata atgtggaact gggtaggtat ctgagaccgg
2001 ttgagcaccc aatctaccat gctatagaca agatttgggg tggtccgact
2051 attatgaaag gttactcggt tgaacagatt ggaagacata ttgagaacgc
2101 gttccgatcg ttcaccgatc cagtggccat tggatttgat gcaagtcggt
2151 ttgatcaaca cgtgagtgtt gaagctctac gctgggaaca tagcgtatac
2201 tcacggattt atggctatcc agagcttctc acacaattgc tgcggtggca
2251 gattcataat cgcggaacag catacgcctc agacggcgcg ttcaactacc
2301 aggtggatgg taaacgcatg agtggggaca tgaacacatc attgggcaat
2351 tgcatcctgg ccacagcaat cacacatgac ttcgtgacca agctgggaat
2401 tccagccaga ttaatcaaca atggagatga caacgtcctg atctgtccgg
2451 cagtggaggt aggcagagtc agacaggaac tgtacagaca ttggttgaac
2501 tacggatttg aagtcatatc agaagaacct gtgtacatcc ttgaacaggt
2551 tgaattttgc cagatgcgac cagtcttcga cggtacacaa tacaccatga
2601 tgagagaccc ccgcaccacc atgtccaaag atgcctatgc tgtaacccct
2651 tttaacacac caaccgcagc aaggaggtgg atgagagcag ttggggaatg
2701 cggactcagc cttacaggag gcctccccgt aaagcaggaa tactatactg
2751 ctctcgtaaa acacggacta gatccgaaaa acatcaaaca gggaaaagac
2801 tttgacagtg ggctatacta tcttagcaag ttatccaatc gcaaatggca
2851 ggaggtccaa gagagcgctc gctactcatt ctggcttgct ttcgggtaca
2901 caccagatga acaacgagcg ttagaggagt attttaaatc ttggactcct
2951 acgtttgaat ggtccacaac gggtattttg gcagaaattc ccgaatgtct
3001 tcttctcaaa tacaatcccc tcccaccgac gtagcccgca gacaacagac
3051 cggtactgcc gtgcgatctg aagacaacca tcgcaatcag ttggaaaaca
3101 ttgctgttgg aaaactcact aaatctgaag gagcacctgc ccaacagaac
3151 gtgatcattg cgaaagaggt ggttatcaat aaccacttca atttcaactg
3201 agctggagtg tgtgtgtgta gattcgtcct ggcctcagtg gttaaggaat
3251 ttaatcttgg ggattttgat ctcctcgatt ctgttcatct tgacgaagac
3301 acaggacacc gttgccgttt atcacgagcc atcggtgtac tcgatcgatc
3351 agacacaaaa attccaaaag atcgacatac acaatggcag caagtagccg
3401 gtctacccga ggtagaaagc agcgcggacg tagcgtggaa gcaaaatcca
3451 gagctattcg agccaacccg cctgtccctc gacccaaccc gcagcgaaac
3501 cgtccccccc ctgcgggaac aacctgctcc atgtccgaaa ttctgcttgc
3551 agtgtcagca acaactgctg accagattct cgagattcca gtgtgtgcag
3601 ggattgactt cccggctgga acgtcgcccc gatacattgg ggcggccaaa
3651 tggctggcag cacaatcaca gatgtggaat acaattgtgt tcaactctgt
3701 gcgtatcact tgggagacat tcacagcaga caccactagc ggatacattt
3751 ccatggcatt cctctccgat tacatgttat caatacccac tggggtggag
3801 gatgttgcca ggatcgtgcc ctcagctaca atagctctga agaacagagg
3851 gccatccatt gtcatgccac agaaccgcac tgtgttcagg tgtatacagg
3901 ctggtcagtt tgctgcattg ggcagcgctg ctgacaagca aatgtattcc
3951 ccaggacgat tcattgtggc tatccctaaa gctagtgcaa cacaagcggt
4001 aggccaaatc aaaatctcgt actccgtgtc ctaccgtgga gcagcgatcc
4051 tacaacccgc cctggttcca ggcccagggc tggcaaatca ttgaacacaa
4101 ggtgagccgg catgaggttg caagaccgga ataaccagtc cttctggcag
4151 agtcctgcca atccaaagtg tttgggagcc taaatcgtat actagtagtt
4201 tgcgtgatga ccatgactgg agagtgggcg gcggctgcca accgcagact
4251 gggcgtatat agtaagcctt gacccaccca tggacaacac gtacttacga
4301 acggtgcgac atggtaactg gatacactta accctggggc aagtagatgc
4351 taggaaacta gcatcgggcc gcccacgagg gtttctgaac tcaacggagt
4401 agaacggggg ggggtaatgc ccctctcttc cggccc