Sequence of DPV Watermelon bud necrosis virus

Watermelon bud necrosis virus isolate Wm-Dwd nucleocapsid (N) gene, complete cds.

ACC No: EU373754

Dated: 2011-02-27 | Length: 828 | CRC: -1755326129

                
ID   EU373754; SV 1; linear; viral cRNA; STD; VRL; 828 BP.
XX
AC   EU373754;
XX
DT   02-JUL-2008 (Rel. 96, Created)
DT   27-FEB-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Watermelon bud necrosis virus isolate Wm-Dwd nucleocapsid (N) gene,
DE   complete cds.
XX
KW   .
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OS   Watermelon bud necrosis virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-828
RX   PUBMED; 21299415.
RA   Kunkalikar S.R., Poojari S., Arun B.M., Rajagopalan P.A., Chen T.C.,
RA   Yeh S.D., Naidu R.A., Zehr U.B., Ravi K.S.;
RT   "Importance and genetic diversity of vegetable-infecting tospoviruses in
RT   India";
RL   Phytopathology 101(3):367-376(2011).
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RN   [2]
RP   1-828
RA   Ravi K.S., Kunkalikar S.R., Sudarsana P., Rajagopalan P.A., Zehr U.B.,
RA   Naidu R.A.;
RT   ;
RL   Submitted (04-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Virology, Mahyco Life Science Research Center, Dawalwadi, Jalna,
RL   Maharashtra 431203, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .828
FT                   /organism="Watermelon bud necrosis virus"
FT                   /host="watermelon"
FT                   /isolate="Wm-Dwd"
FT                   /mol_type="viral cRNA"
FT                   /country="India"
FT                   /note="serogroup: WSMoV; PCR_primers=fwd_name: MhMVL-F,
FT                   rev_name: MhMVL-R"
FT                   /db_xref="taxon:76052"
FT   gene            1. .828
FT                   /gene="N"
FT   CDS             1. .828
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid"
FT                   /db_xref="GOA:B3TQ45"
FT                   /db_xref="InterPro:IPR002517"
FT                   /db_xref="UniProtKB/TrEMBL:B3TQ45"
FT                   /protein_id="ACB12339.1"
FT                   /translation="MSTVKQLTDKKIKDLLAGGAADVEIETEDATPGFSFKSFYDNNKD
FT                   VEITFTTCLNILKCRKQIFTACKNGKYNFCGKNIVATTAQVGPDDWTFKRTEAFIRTKM
FT                   VGMVEKSTNENAKQEMYTKIMELPLVAAYGLNVPAAYDSCALRMMLCIGGPLPLLSSLK
FT                   GLAPVIFPLAYYQNVKKEKLGIKNFSTYEQVCKVAKVLSASQIEFKGEMDNMFKSAVEL
FT                   LSKSNPGTASSISLKKYDDQVKYMDRIFNSSLSMDDYGEHSKKSSKASPSLEL"
XX
SQ   Sequence 828 BP; 274 A; 143 C; 176 G; 235 T; 0 other;

eu373754 Length: 828  27-FEB-2011  Type: N  Check: 4196  ..

       1  atgtctaccg ttaagcaact tactgacaag aaaatcaaag acttgttggc
      51  tggtggtgcc gctgatgttg aaattgaaac cgaagatgca acacctggat
     101  tcagttttaa atctttctac gacaataata aggatgttga aataactttc
     151  acaacctgct tgaatatctt aaagtgcaga aagcagatct ttactgcttg
     201  caagaatggg aaatataatt tctgtgggaa aaatatcgtt gcaacaactg
     251  ctcaagtagg ccctgacgat tggactttta aaaggacaga agctttcatc
     301  agaacaaaga tggttggtat ggtggagaaa agtactaatg aaaacgccaa
     351  acaagagatg tatacaaaaa taatggaact gccattggtg gcagcctacg
     401  gcttgaatgt tcctgcagct tatgattcat gtgctctaag aatgatgtta
     451  tgtattggag gtcctttacc tctcctatct agtttgaaag ggctagcccc
     501  agtcatattt cctttagctt attatcaaaa tgtgaaaaaa gagaagctag
     551  gcataaaaaa cttttctact tatgaacagg tgtgcaaagt agctaaagtt
     601  ctttctgcct cacaaattga gttcaaggga gaaatggata atatgttcaa
     651  atcagctgtt gagttgctca gcaagagtaa cccaggaaca gctagttcaa
     701  tctctctgaa gaaatatgat gaccaggtta aatacatgga caggatcttc
     751  aattctagtc tgtccatgga tgactatggt gagcactcta agaagagctc
     801  aaaggctagt ccttctttgg aattgtaa