Sequence of DPV Watermelon bud necrosis virus

Watermelon bud necrosis virus isolate Wm-Dmp.Fr nucleocapsid (N) gene, complete cds.

ACC No: EU373757

Dated: 2011-02-27 | Length: 828 | CRC: 122686660

                
ID   EU373757; SV 1; linear; viral cRNA; STD; VRL; 828 BP.
XX
AC   EU373757;
XX
DT   02-JUL-2008 (Rel. 96, Created)
DT   27-FEB-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Watermelon bud necrosis virus isolate Wm-Dmp.Fr nucleocapsid (N) gene,
DE   complete cds.
XX
KW   .
XX
OS   Watermelon bud necrosis virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-828
RX   PUBMED; 21299415.
RA   Kunkalikar S.R., Poojari S., Arun B.M., Rajagopalan P.A., Chen T.C.,
RA   Yeh S.D., Naidu R.A., Zehr U.B., Ravi K.S.;
RT   "Importance and genetic diversity of vegetable-infecting tospoviruses in
RT   India";
RL   Phytopathology 101(3):367-376(2011).
XX
RN   [2]
RP   1-828
RA   Ravi K.S., Kunkalikar S.R., Sudarsana P., Rajagopalan P.A., Zehr U.B.,
RA   Naidu R.A.;
RT   ;
RL   Submitted (04-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Virology, Mahyco Life Science Research Center, Dawalwadi, Jalna,
RL   Maharashtra 431203, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .828
FT                   /organism="Watermelon bud necrosis virus"
FT                   /host="watermelon"
FT                   /isolate="Wm-Dmp.Fr"
FT                   /mol_type="viral cRNA"
FT                   /country="India"
FT                   /note="serogroup: WSMoV; PCR_primers=fwd_name: MhMVL-F,
FT                   rev_name: MhMVL-R"
FT                   /db_xref="taxon:76052"
FT   gene            1. .828
FT                   /gene="N"
FT   CDS             1. .828
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid"
FT                   /db_xref="GOA:B3TQ48"
FT                   /db_xref="InterPro:IPR002517"
FT                   /db_xref="UniProtKB/TrEMBL:B3TQ48"
FT                   /protein_id="ACB12342.1"
FT                   /translation="MSTVKQLTDKKIKDLLAGGAADIEIETEDATPGFSFKSFYDNNKD
FT                   VEITFTTCLNILKCRKQIFTACKNGKYNFCGKNIVATTAQVGPDDWTFKRTEAFIRTKM
FT                   VSMVEKSTNENAKQEMYTKIMELPLVAAYGLNVPAAYDSCALRMMLCIGSPLPSLSSVK
FT                   GLAPVIFPLAYYQNVKKEKLGIKNFSTYEQVCKVAKVLSASQIEFKGELDNMFKSAVEL
FT                   LSKSNPGTASSISLKKYDDQVKYMDRVFNASLSMDDYGERSKKSSKAGPSLEL"
XX
SQ   Sequence 828 BP; 270 A; 142 C; 180 G; 236 T; 0 other;

eu373757 Length: 828  27-FEB-2011  Type: N  Check: 7482  ..

       1  atgtctaccg ttaagcaact caccgacaag aaaatcaaag acttgttggc
      51  tggtggtgcc gctgacattg aaattgaaac cgaagatgca acacctgggt
     101  tcagttttaa atctttttac gataataaca aggatgttga aatcactttt
     151  acaacctgtt taaacatctt gaagtgcaga aagcagatct ttactgcttg
     201  caagaatggg aaatataatt tctgtgggaa aaatatcgtt gcaacaactg
     251  ctcaagtagg ccctgatgat tggactttta aaaggacaga agcttttatc
     301  agaacaaaaa tggttagtat ggtggagaaa agtactaatg aaaatgccaa
     351  gcaagagatg tacacaaaaa taatggaact gccattggtg gcagcttatg
     401  gcttgaatgt tcctgcagct tatgattcat gtgctttaag aatgatgttg
     451  tgtattggaa gtcctttacc ctccttatct agtgtgaaag ggctggcacc
     501  agttatattc cctttggctt attaccaaaa tgtaaagaaa gagaagttag
     551  gcattaaaaa cttctctact tatgaacagg tgtgcaaagt agctaaagtt
     601  ctttctgcat cacaaattga gtttaagggc gaattggata acatgttcaa
     651  atcagctgtt gagttgctca gcaagagtaa cccaggaaca gccagttcaa
     701  tctctctgaa gaaatacgat gatcaagtca agtacatgga tagagtcttc
     751  aatgctagtc tttctatgga tgactacggt gagcgctcta aaaagagctc
     801  aaaggctggt ccttcgctgg aattgtaa