Sequence of DPV Watermelon bud necrosis virus

Watermelon bud necrosis virus isolate Wm-Mus nucleocapsid (N) gene, complete cds.

ACC No: EU373762

Dated: 2011-02-27 | Length: 828 | CRC: 647148907

                
ID   EU373762; SV 1; linear; viral cRNA; STD; VRL; 828 BP.
XX
AC   EU373762;
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DT   02-JUL-2008 (Rel. 96, Created)
DT   27-FEB-2011 (Rel. 108, Last updated, Version 2)
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DE   Watermelon bud necrosis virus isolate Wm-Mus nucleocapsid (N) gene,
DE   complete cds.
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KW   .
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OS   Watermelon bud necrosis virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-828
RX   PUBMED; 21299415.
RA   Kunkalikar S.R., Poojari S., Arun B.M., Rajagopalan P.A., Chen T.C.,
RA   Yeh S.D., Naidu R.A., Zehr U.B., Ravi K.S.;
RT   "Importance and genetic diversity of vegetable-infecting tospoviruses in
RT   India";
RL   Phytopathology 101(3):367-376(2011).
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RN   [2]
RP   1-828
RA   Ravi K.S., Kunkalikar S.R., Sudarsana P., Rajagopalan P.A., Zehr U.B.,
RA   Naidu R.A.;
RT   ;
RL   Submitted (04-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Virology, Mahyco Life Science Research Center, Dawalwadi, Jalna,
RL   Maharashtra 431203, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .828
FT                   /organism="Watermelon bud necrosis virus"
FT                   /host="watermelon"
FT                   /isolate="Wm-Mus"
FT                   /mol_type="viral cRNA"
FT                   /country="India"
FT                   /note="serogroup: WSMoV; PCR_primers=fwd_name: MhMVL-F,
FT                   rev_name: MhMVL-R"
FT                   /db_xref="taxon:76052"
FT   gene            1. .828
FT                   /gene="N"
FT   CDS             1. .828
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid"
FT                   /db_xref="GOA:B3TQ53"
FT                   /db_xref="InterPro:IPR002517"
FT                   /db_xref="UniProtKB/TrEMBL:B3TQ53"
FT                   /protein_id="ACB12347.1"
FT                   /translation="MSTVKQLTDRKIKDLLAGGAADIEIETEDATPGFSFKSFYDNNKD
FT                   VEITFTTCLNILKCRKQIFTACKNEKYNFCGKNIVATTAQVGPDDWTFKRTEAFIRTKM
FT                   VSMVEKSTNENAKQEMYTKVMELPLVAAYGLNVPAAYDSCALRMMLCIGGPLPLLSSVK
FT                   GLAPVIFPLAYYQNVKKEKLGIKNFSTYEQVCKVAKVLSASQIEFKGELDNMFKSAVEL
FT                   LSKSNPGTASSISLKKYDDQVKYMDRIFNASLSMDDHGEHSKKSSKAGTSLEL"
XX
SQ   Sequence 828 BP; 277 A; 139 C; 175 G; 237 T; 0 other;

eu373762 Length: 828  27-FEB-2011  Type: N  Check: 3574  ..

       1  atgtctaccg ttaagcaact taccgacagg aaaatcaaag acttgttggc
      51  tggtggtgct gctgatattg aaattgaaac tgaagatgca acacctgggt
     101  tcagttttaa atctttctat gacaataata aagatgttga aataactttt
     151  acaacctgct taaatatctt aaagtgcaga aagcagatct ttactgcttg
     201  caaaaacgag aaatataatt tctgcgggaa aaatattgtt gcaacaactg
     251  ctcaagtagg ccctgatgat tggactttta aaagaacaga agcttttatc
     301  agaacaaaga tggttagtat ggtagagaaa agtactaatg aaaatgccaa
     351  acaagagatg tatacaaagg taatggaatt gccattggtg gcagcttatg
     401  gattgaatgt tcctgcagct tatgattcat gtgctctaag aatgatgttg
     451  tgcattggag gtcctctacc tctcctatct agtgtgaaag ggctggcacc
     501  agttatattc cctctggctt attatcaaaa tgtaaaaaaa gagaagttag
     551  gcattaaaaa cttctctact tatgaacagg tgtgcaaagt tgctaaagtt
     601  ctttctgctt cgcaaatcga gtttaaaggc gaattggaca atatgttcaa
     651  atcagctgtt gagttgctca gcaagagtaa cccaggaaca gccagttcaa
     701  tctctctgaa gaaatatgac gaccaagtca aatacatgga cagaattttt
     751  aatgctagtc tttcaatgga tgatcacggt gagcactcta agaagagctc
     801  aaaggctggc acttcgctgg aattgtaa