Sequence of DPV Groundnut bud necrosis virus

Groundnut bud necrosis virus isolate Wm-Jln.9 nucleocapsid (N) gene, complete cds.

ACC No: EU373796

Dated: 2011-02-27 | Length: 831 | CRC: 344879800

                
ID   EU373796; SV 1; linear; viral cRNA; STD; VRL; 831 BP.
XX
AC   EU373796;
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DT   02-JUL-2008 (Rel. 96, Created)
DT   27-FEB-2011 (Rel. 108, Last updated, Version 2)
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DE   Groundnut bud necrosis virus isolate Wm-Jln.9 nucleocapsid (N) gene,
DE   complete cds.
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KW   .
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OS   Groundnut bud necrosis virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-831
RX   PUBMED; 21299415.
RA   Kunkalikar S.R., Poojari S., Arun B.M., Rajagopalan P.A., Chen T.C.,
RA   Yeh S.D., Naidu R.A., Zehr U.B., Ravi K.S.;
RT   "Importance and genetic diversity of vegetable-infecting tospoviruses in
RT   India";
RL   Phytopathology 101(3):367-376(2011).
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RN   [2]
RP   1-831
RA   Ravi K.S., Kunkalikar S.R., Sudarsana P., Rajagopalan P.A., Zehr U.B.,
RA   Naidu R.A.;
RT   ;
RL   Submitted (06-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Virology, Mahyco Life Science Research Center, Dawalwadi, Jalna,
RL   Maharashtra 431203, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .831
FT                   /organism="Groundnut bud necrosis virus"
FT                   /host="watermelon"
FT                   /isolate="Wm-Jln.9"
FT                   /mol_type="viral cRNA"
FT                   /country="India"
FT                   /note="serogroup: WSMoV; PCR_primers=fwd_name: MhMVL-F,
FT                   rev_name: MhMVL-R"
FT                   /db_xref="taxon:198612"
FT   gene            1. .831
FT                   /gene="N"
FT   CDS             1. .831
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid"
FT                   /db_xref="GOA:B3TQ87"
FT                   /db_xref="InterPro:IPR002517"
FT                   /db_xref="UniProtKB/TrEMBL:B3TQ87"
FT                   /protein_id="ACB12381.1"
FT                   /translation="MSNVKKYTGKKIKELLAGGSADVEIETEDSTPGFSFKAFYDTNKN
FT                   LEITFTNCLNILKCRKQIFAACKSGKYVFCGKTIVATNTDVGPDDWTFKRTEAFIRTKM
FT                   ASMVEKSKNDAAKQEMYNKIMELPLVAAYGLNVPASFDTCALRMMLCIGGPLPLLSSMT
FT                   GLAPIIFPLAYYQNVKKEKLGIKNFSTYEQVCKVAKVLSASQIEFKNELEEMFKSAVKL
FT                   LSESNPGTASSISLKKYDEQVKYMDKAFSASLSMDDYGEHSKKKSSKAGPSLEL"
XX
SQ   Sequence 831 BP; 276 A; 141 C; 177 G; 237 T; 0 other;

eu373796 Length: 831  27-FEB-2011  Type: N  Check: 3897  ..

       1  atgtctaacg ttaagaagta caccgggaag aaaatcaaag aacttttggc
      51  tggtggctct gcagatgttg aaattgaaac agaagattct actcccggat
     101  ttagctttaa agctttctat gacactaaca aaaatcttga aataactttc
     151  acaaactgtc tgaatatttt gaagtgcagg aagcagatct ttgctgcttg
     201  taaaagtggt aagtatgttt tttgtggtaa aaccattgtt gctacaaata
     251  ctgacgtagg gccagatgac tggaccttca aaaggacaga agctttcatc
     301  aggaccaaaa tggctagtat ggttgagaag agcaagaatg atgctgctaa
     351  gcaggagatg tacaataaaa taatggaatt accattagtg gcagcttatg
     401  gattaaatgt ccctgcatct tttgatacat gtgctttaag gatgatgctc
     451  tgcattggag gtcctctacc tctcttgtct agcatgacag gtctggcacc
     501  aattatattt cctctggctt attatcaaaa tgtgaagaaa gagaaattag
     551  gaattaagaa cttttctact tatgaacaag tttgcaaagt agccaaagta
     601  ctttctgctt cacagattga attcaaaaat gaactagagg aaatgtttaa
     651  atcagctgta aagctattga gtgagagcaa ccctggaaca gccagctcta
     701  tctcactcaa gaaatatgat gaacaagtca aatacatgga caaagctttc
     751  agtgccagtc tctcaatgga tgattatggt gaacattcta agaagaagag
     801  ttcaaaggct ggcccttcgc tggaattgtg a