Sequence of DPV Capsicum chlorosis virus

Capsicum chlorosis virus isolate Ch-Pan nucleocapsid (N) gene, complete cds.

ACC No: EU373799

Dated: 2011-02-27 | Length: 828 | CRC: 1424760310

                
ID   EU373799; SV 1; linear; viral cRNA; STD; VRL; 828 BP.
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AC   EU373799;
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DT   02-JUL-2008 (Rel. 96, Created)
DT   27-FEB-2011 (Rel. 108, Last updated, Version 3)
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DE   Capsicum chlorosis virus isolate Ch-Pan nucleocapsid (N) gene, complete
DE   cds.
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KW   .
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OS   Capsicum chlorosis virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-828
RX   DOI; 10.1007/s00705-010-0681-5.
RX   PUBMED; 20443030.
RA   Kunkalikar S.R., Sudarsana P., Rajagopalan P., Zehr U.B., Ravi K.S.;
RT   "Biological and molecular characterization of Capsicum chlorosis virus
RT   infecting chilli and tomato in India";
RL   Arch. Virol. 155(7):1047-1057(2010).
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RN   [2]
RP   1-828
RX   PUBMED; 21299415.
RA   Kunkalikar S.R., Poojari S., Arun B.M., Rajagopalan P.A., Chen T.C.,
RA   Yeh S.D., Naidu R.A., Zehr U.B., Ravi K.S.;
RT   "Importance and genetic diversity of vegetable-infecting tospoviruses in
RT   India";
RL   Phytopathology 101(3):367-376(2011).
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RN   [3]
RP   1-828
RA   Ravi K.S., Kunkalikar S.R., Sudarsana P., Rajagopalan P.A., Zehr U.B.,
RA   Naidu R.A.;
RT   ;
RL   Submitted (07-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Virology, Mahyco Life Science Research Center, Dawalwadi, Jalna,
RL   Maharashtra 431203, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .828
FT                   /organism="Capsicum chlorosis virus"
FT                   /host="Capsicum annuum (chili)"
FT                   /isolate="Ch-Pan"
FT                   /mol_type="viral cRNA"
FT                   /country="India"
FT                   /note="serogroup: WSMoV; PCR_primers=fwd_name: CNF,
FT                   rev_name: CNR"
FT                   /db_xref="taxon:163325"
FT   gene            1. .828
FT                   /gene="N"
FT   CDS             1. .828
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid"
FT                   /db_xref="GOA:B3TQ90"
FT                   /db_xref="InterPro:IPR002517"
FT                   /db_xref="UniProtKB/TrEMBL:B3TQ90"
FT                   /protein_id="ACB12384.1"
FT                   /translation="MSNVKQLTEKKIRELLAGGTADVEIETEDSTPGFSFKTFYDNNKS
FT                   VEMTFTNCLNILKCRKQIFAACKSGKYKFCEKTIVSTDANVGPEDWTFKRTEALIRVKM
FT                   INMVEKNKNEAAKQEMYAKVMELPLVAAYGLNIPALFDSCALRMMLCIGGPLPLLSSIK
FT                   GLAPIIFPLAYYQNVKKEKLGIKNFSTYEQVCKVAKVLSASQIEFKEDLNTLFRQAVKL
FT                   LSESNPGTASSISLKKYDEQVKYMDKAFSANLSVDDYGVHSKKNSKPSTSLEV"
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SQ   Sequence 828 BP; 278 A; 129 C; 174 G; 247 T; 0 other;

eu373799 Length: 828  27-FEB-2011  Type: N  Check: 7235  ..

       1  atgtctaacg tcaagcaact taccgagaag aaaattagag aactcttggc
      51  tggtggaact gcagatgttg aaattgaaac tgaggattca actcctggat
     101  tcagtttcaa gacattctat gataataaca aaagcgttga aatgacattc
     151  acaaactgtc ttaatatttt gaagtgtaga aagcagattt ttgctgcttg
     201  caaaagtgga aagtataagt tctgtgaaaa aacaattgtt tctacggatg
     251  ctaatgttgg tccagaggat tggactttta agagaacaga agctttgata
     301  agagttaaga tgatcaacat ggtagagaag aataaaaatg aagctgctaa
     351  acaagagatg tatgcaaagg taatggaatt acctttagtg gcagcatatg
     401  gattgaacat acctgctttg tttgattcat gtgctctcag gatgatgtta
     451  tgtattggtg gtcctctacc actattatcc agtattaagg gtcttgcacc
     501  aattattttc ccactagctt attaccaaaa tgttaaaaaa gagaaattgg
     551  gcatcaaaaa cttctctacc tatgaacagg tttgtaaagt ggctaaagtt
     601  ctttctgctt ctcaaataga atttaaggaa gatctgaaca cactgttcag
     651  acaggctgtc aagttgctta gtgaaagcaa ccctggtact gctagttcca
     701  tctcacttaa gaagtatgat gagcaagtta aatatatgga caaagcattt
     751  agtgctaatt tgtctgtgga cgattatggt gttcattcaa agaagaactc
     801  aaagcctagc acttcgctgg aagtgtaa