Sequence of DPV Sweet potato chlorotic fleck virus

Sweet potato chlorotic fleck virus isolate 94-1S coat protein (CP) and nucleic acid binding protein (NaBP) genes, complete cds.

ACC No: EU375900

Dated: 2008-12-24 | Length: 1761 | CRC: 1074056780

                
ID   EU375900; SV 1; linear; genomic RNA; STD; VRL; 1761 BP.
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AC   EU375900;
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DT   24-DEC-2008 (Rel. 98, Created)
DT   24-DEC-2008 (Rel. 98, Last updated, Version 1)
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DE   Sweet potato chlorotic fleck virus isolate 94-1S coat protein (CP) and
DE   nucleic acid binding protein (NaBP) genes, complete cds.
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KW   .
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OS   Sweet potato chlorotic fleck virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Carlavirus; unclassified Carlavirus.
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RN   [1]
RP   1-1761
RA   Aritua V., Barg E., Adiapa E., Gibson R.W., Lesemann D.E., Vetten H.J.;
RT   "Host range, purification and genetic variability in Sweet potato chlorotic
RT   fleck virus";
RL   Plant Dis. 93:87-93(2009).
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RN   [2]
RP   1-1761
RA   Aritua V., Barg E., Adiapa E., Gibson R.W., Lesemann D.E., Vetten H.J.;
RT   ;
RL   Submitted (05-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL   National Agricultural Biotechnology Center, Kawanda Agricultural Research
RL   Institute, 13Km Bombo Road, P. O. Box 7065, Kampala 256, Uganda
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1761
FT                   /organism="Sweet potato chlorotic fleck virus"
FT                   /host="sweet potato"
FT                   /isolate="94-1S"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya"
FT                   /db_xref="taxon:263004"
FT   gene            425. .1324
FT                   /gene="CP"
FT   CDS             425. .1324
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="ACB72624.1"
FT                   /translation="MAAKEADTMDKVESSKGKEKAGEQTTTLEGLNEVKAAQGEISDQQ
FT                   LMKHDALIKWYMENYRPSDVVNPLMQSGDKHVTLSDNLKEDAANIYSRPNFNTLLKWNR
FT                   EPVSQSIATAEDIAQIEAMLVGLGIPQERVRTAILDIVLYAAHSSSSPQQLYEGDIDFR
FT                   DASFKEAISRSSVAAVIKDKSTIRKVCRLFAPVVWSYMIINNEPPSGWQAKGFPENAKF
FT                   AAFDTFDFVTNHAAIKPLEGIARPPNSVEYIAAQTSKRILIDKARRNEKLSNYEASVTG
FT                   GQQACEIKTELKGNGKCK"
FT   gene            1308. .1709
FT                   /gene="NaBP"
FT   CDS             1308. .1709
FT                   /codon_start=1
FT                   /gene="NaBP"
FT                   /product="nucleic acid binding protein"
FT                   /protein_id="ACB72625.1"
FT                   /translation="MGSASERLPNFVATFLYGRGLLCDWDCCLLISSIVSNYNKGMRTY
FT                   KFFACGQSKSAIKRRARRMQICPRCAKYECGKRCEPNTYSQFQVKELVTVGVNRYTTEN
FT                   IAKKGTNVRRHCKNELEFIKYESLKVKPK"
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SQ   Sequence 1761 BP; 560 A; 321 C; 431 G; 449 T; 0 other;

eu375900 Length: 1761  24-DEC-2008  Type: N  Check: 2291  ..

       1  gggtcacagc actaatagga ttccttttat gtttcatgac tgttgtttat
      51  attgatagtg taagagttgt ccctggtagt tgtgtgattg taattaccaa
     101  gtccagtata accatcaggt catgtgaaga ggtcccagat ttatcagtgc
     151  tcaagacttt taatctctca ggggtagatt gtactcttta gattgttaga
     201  tttaaattga aatgtttgct ggggagagtc aggaacagtt tgaagaaaga
     251  ttggacaaat ataataaaat caggagagag gcaagagatg aagggaagag
     301  tagccctgag gtgaaagcac tgttagatct agaagttgaa gaggataaga
     351  agagatttgc acacaaggaa cctaccaaga acagctcacc tcaagtgttt
     401  caaagtcaca tacttggagc atctatggcg gcgaaggagg ctgatacaat
     451  ggataaagtg gaatcaagca aaggtaagga gaaagctgga gagcaaacaa
     501  ccacacttga aggactgaat gaggtaaagg ccgctcaggg cgagatatcc
     551  gatcagcaat taatgaagca cgatgcattg atcaagtggt acatggaaaa
     601  ctacagacct tctgatgtag ttaatcctct catgcaaagt ggagataagc
     651  acgtgacgct cagcgacaat ttgaaggagg atgcggctaa tatatatagc
     701  agacccaatt tcaacactct tctaaagtgg aacagggagc ccgtgagtca
     751  aagcattgcg acagctgaag atatagccca aattgaagcg atgcttgttg
     801  gtttgggcat accacaagag agagtgagaa cagccattct ggatattgtt
     851  ctctatgctg ctcactcaag ctcctcaccc cagcaactgt acgagggtga
     901  catagacttt cgcgatgcga gcttcaaaga ggccatatct agatcctctg
     951  tggccgcagt aatcaaggac aaatctacta ttagaaaagt ctgtcgcctt
    1001  tttgcacctg tggtttggag ttatatgata atcaacaatg aacccccatc
    1051  agggtggcaa gccaaaggct tcccagagaa tgcaaagttc gctgccttcg
    1101  atacttttga tttcgtgaca aaccatgccg ctatcaaacc ccttgagggc
    1151  atagctaggc ccccaaattc tgtggaatac atagctgctc aaacaagcaa
    1201  gaggatcctt attgacaaag ctcgtaggaa tgagaagctc agcaattatg
    1251  aggcgagtgt tacaggaggg cagcaagctt gtgaaatcaa gaccgaactt
    1301  aaaggtaatg ggaagtgcaa gtgagagact tccaaatttc gttgctacct
    1351  ttctctatgg ccgcgggctg ttatgtgatt gggattgttg tcttttgatt
    1401  tctagtatag ttagtaacta caataagggc atgagaacct acaagttctt
    1451  cgcttgtggc caatcaaaat cggccattaa gcggagggct aggaggatgc
    1501  aaatttgccc caggtgtgct aaatatgagt gtggtaagag gtgtgaacca
    1551  aatacctata gtcagtttca ggtgaaggag ttggtcactg ttggtgtgaa
    1601  taggtacact accgaaaaca tcgcaaagaa agggaccaat gtccgacgcc
    1651  attgtaaaaa tgaattagaa tttattaaat atgaaagtct taaggtaaag
    1701  cctaaataat aaataaacca ttaggactat aaactttgca tgttttaaag
    1751  tacttttgag c