Sequence of DPV Sweet potato chlorotic fleck virus

Sweet potato chlorotic fleck virus isolate Gwangzhu 1 coat protein (CP) and nucleic acid binding protein (NaBP) genes, complete cds.

ACC No: EU375901

Dated: 2008-12-24 | Length: 1761 | CRC: -1235380968

                
ID   EU375901; SV 1; linear; genomic RNA; STD; VRL; 1761 BP.
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AC   EU375901;
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DT   24-DEC-2008 (Rel. 98, Created)
DT   24-DEC-2008 (Rel. 98, Last updated, Version 1)
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DE   Sweet potato chlorotic fleck virus isolate Gwangzhu 1 coat protein (CP) and
DE   nucleic acid binding protein (NaBP) genes, complete cds.
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KW   .
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OS   Sweet potato chlorotic fleck virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Carlavirus; unclassified Carlavirus.
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RN   [1]
RP   1-1761
RA   Aritua V., Barg E., Adiapa E., Gibson R.W., Lesemann D.E., Vetten H.J.;
RT   "Host range, purification and genetic variability in Sweet potato chlorotic
RT   fleck virus";
RL   Plant Dis. 93:87-93(2009).
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RN   [2]
RP   1-1761
RA   Aritua V., Barg E., Adiapa E., Gibson R.W., Lesemann D.E., Vetten H.J.;
RT   ;
RL   Submitted (08-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL   National Agricultural Biotechnology Center, Kawanda Agricultural Research
RL   Institute, 13Km Bombo Road, P. O. Box 7065, Kampala 256, Uganda
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1761
FT                   /organism="Sweet potato chlorotic fleck virus"
FT                   /host="sweet potato"
FT                   /isolate="Gwangzhu 1"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:263004"
FT   gene            425. .1324
FT                   /gene="CP"
FT   CDS             425. .1324
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="ACB72626.1"
FT                   /translation="MAAKEVEAMDKGESSKGKEKAEGQTATLEGLKEVKAAQGEISDQQ
FT                   LMRHDALIKWHMDNYRPSDVVNPLMQSGEKHVTLSDNLKEDAANIYSRPNFNTLLKWNR
FT                   EPVSQSIATAEDIAQIEAMLVGLGIPQERVRTAILDIVLYAAHSSSSPQQLYEGDVDFR
FT                   DANFKEAISRSSVAAVIKDKSTIRKVCRLFAPVVWSYMIINNEPPSGWQAKGFPENAKF
FT                   AAFDTFDFVTNHAAIKPLEGIARPPNSVEYIAAQTSKRILMDKARRNEKLSNYEASVTG
FT                   GQQACEIKTELKGNGKCK"
FT   gene            1308. .1709
FT                   /gene="NaBP"
FT   CDS             1308. .1709
FT                   /codon_start=1
FT                   /gene="NaBP"
FT                   /product="nucleic acid binding protein"
FT                   /protein_id="ACB72627.1"
FT                   /translation="MASASERSPNFIATFLYGRGLLRDWDCCLTISSIVSNYNKGMRTY
FT                   KFFACGQSKSAIKRRARRMQICPGCAKYECSKRCEPNTYSQFQVKELVTVGVNRYTTEN
FT                   ITKKGTNVRRHCKNELEFIKYESLKVKPK"
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SQ   Sequence 1761 BP; 559 A; 318 C; 437 G; 447 T; 0 other;

eu375901 Length: 1761  24-DEC-2008  Type: N  Check: 6144  ..

       1  gggtcacagc actaatagga ttccttttat gtttcatgac tgttgtttat
      51  attgatagtg taagagttgt ccctggtagt tgtgtgattg taattaccaa
     101  gtccagtata accatcaggt catgtgaaga ggtcccagat ttatcagtgc
     151  tcaagacttt taatctctca ggggtagatt gtactcttta gattgttaga
     201  tttaaattga aatgtttgct ggggagagtc aggaacagtt tgaagaaaga
     251  ttggacaaat ataataaaat caggagagag gcaagagatg aagggaagag
     301  tagccctgag gtgaaagcac tgttagatct agaagttgaa gaggataaga
     351  agagatttgc acacaaggaa cctaccaaga acagctcacc tcaagtgttt
     401  caaagtcaca tacttggagc atctatggca gcgaaggagg ttgaagcaat
     451  ggataaaggg gaatcaagca aagggaagga aaaagctgaa gggcagacag
     501  ccacacttga gggacttaag gaagtaaagg ctgctcaggg cgagatatcc
     551  gaccagcaac tgatgaggca cgatgcattg atcaagtggc acatggacaa
     601  ctacagacct tctgatgtag ttaacccact catgcaaagt ggggagaagc
     651  acgtgactct aagtgataat ttgaaggagg atgcggccaa tatatacagc
     701  aggcccaatt ttaacacact cttaaagtgg aacagagagc ctgtaagtca
     751  aagcatagca acggctgaag atatagctca aattgaggct atgcttgttg
     801  gtttaggcat accgcaggag agagtgagga cagccatttt ggatattgtc
     851  ctctatgctg cccattcgag ctcctcccct caacaactgt atgaaggtga
     901  tgttgatttt cgtgatgcaa acttcaagga ggccatatcc agatcctctg
     951  tggcggcagt gattaaggac aaatctacta tccggaaggt ctgtcgtctc
    1001  tttgcaccag tggtctggag ctacatgata atcaacaacg aacccccatc
    1051  aggatggcag gctaaaggtt ttccagaaaa tgctaagttc gcagcctttg
    1101  acacttttga ttttgtgaca aaccatgccg ctatcaaacc tctagagggc
    1151  atcgctaggc ccccaaattc tgtggaatat atagctgctc agacaagcaa
    1201  gaggatcctg atggacaaag ctcgcaggaa tgagaagctc agtaattatg
    1251  aggcgagtgt gactggtggg caacaagctt gtgaaattaa aactgaactt
    1301  aaaggtaatg gcaagtgcaa gtgaaaggtc tcctaacttc attgcaacct
    1351  ttctttatgg tcgcggacta ttgcgcgatt gggattgttg tcttacgatt
    1401  tctagtatag ttagtaacta caataagggc atgagaacct acaagttctt
    1451  cgcttgtggc caatcaaaat cggctataaa gaggagagct aggaggatgc
    1501  aaatttgccc cgggtgtgct aaatatgagt gtagtaagag gtgtgaaccg
    1551  aacacctata gtcagtttca ggtgaaagaa ttggtcactg ttggtgtgaa
    1601  taggtacact accgaaaaca tcacaaagaa agggaccaat gtccgtcgcc
    1651  actgtaagaa tgaattagaa tttattaaat atgaaagtct taaggtaaag
    1701  cctaaataat gaataaacca ttaggactat aaactttgca tgttttaaag
    1751  tacttttcag c