Sequence of DPV Sweet potato chlorotic fleck virus

Sweet potato chlorotic fleck virus isolate Njoro 5 coat protein (CP) and nucleic acid binding protein (NaBP) genes, complete cds.

ACC No: EU375910

Dated: 2008-12-24 | Length: 1761 | CRC: 2038747749

                
ID   EU375910; SV 1; linear; genomic RNA; STD; VRL; 1761 BP.
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AC   EU375910;
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DT   24-DEC-2008 (Rel. 98, Created)
DT   24-DEC-2008 (Rel. 98, Last updated, Version 1)
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DE   Sweet potato chlorotic fleck virus isolate Njoro 5 coat protein (CP) and
DE   nucleic acid binding protein (NaBP) genes, complete cds.
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KW   .
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OS   Sweet potato chlorotic fleck virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Carlavirus; unclassified Carlavirus.
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RN   [1]
RP   1-1761
RA   Aritua V., Barg E., Adiapa E., Gibson R.W., Lesemann D.E., Vetten H.J.;
RT   "Host range, purification and genetic variability in Sweet potato chlorotic
RT   fleck virus";
RL   Plant Dis. 93:87-93(2009).
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RN   [2]
RP   1-1761
RA   Aritua V., Barg E., Adiapa E., Gibson R.W., Lesemann D.E., Vetten H.J.;
RT   ;
RL   Submitted (08-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL   National Agricultural Biotechnology Center, Kawanda Agricultural Research
RL   Institute, 13Km Bombo Road, P. O. Box 7065, Kampala 256, Uganda
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1761
FT                   /organism="Sweet potato chlorotic fleck virus"
FT                   /host="sweet potato"
FT                   /isolate="Njoro 5"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya"
FT                   /db_xref="taxon:263004"
FT   gene            425. .1324
FT                   /gene="CP"
FT   CDS             425. .1324
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="ACB72644.1"
FT                   /translation="MAAKEADTMEKGESNKGKEKAEGQATTLEGLKEVKAAQGEISDQQ
FT                   LMKHDALIKWYMENYRPSDVVNPLMQSGEKHVTLSDNLKEDSANIYSRPNFTTLLKWNR
FT                   EPVSQSIATAEDIAQIEAMLVGLGIPQERVRTAILDIVLYAAHSSSSPQQLYEGDVDFR
FT                   DANFKEAISRSSVAAVIKDKSTIRKVCRLFAPVVWSYMIINNEPPSGWQAKGFPENAKF
FT                   AAFDTFDFVTNHAAIKPLEGIARPPNSVEYIAAQTSKRILIDKARRNEKLSNYEASVTG
FT                   GQQACEIKTELKGNGKCK"
FT   gene            1308. .1709
FT                   /gene="NaBP"
FT   CDS             1308. .1709
FT                   /codon_start=1
FT                   /gene="NaBP"
FT                   /product="nucleic acid binding protein"
FT                   /protein_id="ACB72645.1"
FT                   /translation="MGSASERPPNFVATFLYGRGLLCDWDCCLLISSIVSNYNKGMRTY
FT                   KNFACGQSKSAVKRRARRMQICPKCAKYECGKRCEPNTYSQSQVRELITVGVNRYSTEN
FT                   ITKKGTNVRRHCKNELEFIKYESLKVKPK"
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SQ   Sequence 1761 BP; 573 A; 326 C; 428 G; 434 T; 0 other;

eu375910 Length: 1761  24-DEC-2008  Type: N  Check: 703  ..

       1  ggactacagc actaatagga ttccttttat gttttatgac tgttgtatat
      51  attgatagta taagagttgt tcctagtaat tgtgtggttg tgattaccaa
     101  gtccagtata accatcaggt cctgtacgca aatcccagat ttgtcagtgc
     151  tcaagacttt caacctctca ggggtagatt gtactcttta gattgttaga
     201  tttaaattga aatgtttgct ggggagagtc aggagcaatt taaagaaaga
     251  ttggatagat acaatagaat caggagagag gcaagagatg aagggaagag
     301  tagctctgaa gtaaaagcac tgctagatta cgaagtggaa gaggataaga
     351  agaaatttgc ccacaaggaa tctaccaaaa ttagcccacc ccaagtaagt
     401  caaagtcgca catttggagc acctatggca gcgaaggagg ctgacacaat
     451  ggagaagggg gaatcaaaca aaggtaagga gaaagctgaa gggcaagcaa
     501  ccacacttga agggctgaag gaagtaaaag ccgctcaggg tgagatatca
     551  gaccagcaat taatgaagca cgatgcattg attaagtggt acatggaaaa
     601  ctacagacct tctgatgtag ttaacccact catgcaaagt ggagagaagc
     651  acgtgacgct cagtgacaat ctgaaagagg actcggctaa catatacagc
     701  aggcccaatt tcacaactct gctaaagtgg aacagggagc ccgttagtca
     751  aagcattgca acagctgaag acatagcaca gattgaagcg atgcttgttg
     801  gtttaggcat cccgcaagag agagtgagga cagccattct ggatattgtc
     851  ctctatgctg cccactcaag ctcctcacct caacaactgt atgagggtga
     901  tgtagacttc cgcgatgcga acttcaaaga ggccatatcc agatcctctg
     951  tggctgcagt aattaaggat aaatccacta ttagaaaagt ctgtcgtctt
    1001  tttgcaccag tagtctggag ctacatgata atcaacaatg aacccccatc
    1051  agggtggcag gccaaaggtt tcccagaaaa tgctaagttc gctgctttcg
    1101  acacttttga tttcgtgaca aaccatgccg ctatcaaacc tctagagggc
    1151  atagccaggc ctccaaattc tgtggaatac atagctgctc agacaagcaa
    1201  gaggattctt attgacaaag ctcgcaggaa tgagaaactt agtaattatg
    1251  aggcaagtgt gactggtggg caacaagcat gtgaaatcaa gaccgaactt
    1301  aaaggtaatg ggaagtgcaa gtgagaggcc accgaatttc gttgcaacct
    1351  ttctttacgg ccgtgggtta ttatgtgatt gggattgttg tcttttgatt
    1401  tctagtatag ttagtaatta caataagggc atgagaacct acaagaactt
    1451  cgcttgtggc caatcaaaat cggcagtaaa gcggagggct aggaggatgc
    1501  aaatttgccc caagtgtgct aaatatgagt gtggtaagag gtgtgaacca
    1551  aatacctaca gtcagtctca ggtgagggaa ttgatcaccg ttggtgtgaa
    1601  taggtactct accgaaaaca tcacgaagaa agggaccaat gtccggcgcc
    1651  attgtaaaaa tgaattggaa tttattaaat atgaaagtct taaggtaaag
    1701  cctaaataat aaataaacta ttaggactat aaactttgca tgttttaaag
    1751  tacttttgag c