Sequence of DPV Barley yellow dwarf virus-GAV
Barley yellow dwarf virus-GAV isolate 04FX1, complete genome.
ACC No: EU402387
Dated: 2008-02-13 | Length: 5683 | CRC: -278486500
ID EU402387; SV 1; linear; genomic RNA; STD; VRL; 5683 BP.
XX
AC EU402387;
XX
DT 13-FEB-2008 (Rel. 94, Created)
DT 13-FEB-2008 (Rel. 94, Last updated, Version 1)
XX
DE Barley yellow dwarf virus-GAV isolate 04FX1, complete genome.
XX
KW .
XX
OS Barley yellow dwarf virus-GAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus; unclassified Luteovirus.
XX
RN [1]
RP 1-5683
RA Liu S., Wang X., Liu Y., Zhou G.;
RT "Nucleotide sequence analysis of the genome of Barley yellow dwarf
RT virus-GAV in China";
RL Unpublished.
XX
RN [2]
RP 1-5683
RA Liu S., Wang X., Liu Y., Zhou G.;
RT ;
RL Submitted (14-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of
RL Agricultural Sciences, 2 West Yuanmingyuan Road, Beijing 100094, China
XX
FH Key Location/Qualifiers
FH
FT source 1. .5683
FT /organism="Barley yellow dwarf virus-GAV"
FT /specific_host="wheat"
FT /isolate="04FX1"
FT /serotype="GAV"
FT /mol_type="genomic RNA"
FT /country="China:Fengxiang"
FT /virion
FT /db_xref="taxon:224578"
FT CDS join(140. .1156,1156. .2742)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp; P1-P2 fusion created by -1 ribosomal
FT frameshift"
FT /protein_id="ABY91251.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKAKSGVTEAWNDF
FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEARDNARAAAKIGAEMFAPVDVQNLYSFTEVKKVETGLTKEVVKE
FT KNGEETKHLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGFL
FT EGLCTASGFESPFPILGLPETAVTDGARLRKVSSSIRYLSQTHLGLVYKAPNASLHNAL
FT VAVERRVFTVGKGDKPIYPPRPEHDIFTETMDYFGKSIIDEVGYCKTYPAQLLANSYSA
FT GKRAMYHKAIASLKTTPYQQRDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR
FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS
FT EQALKWEHGIYNGIFGDSELALALEHQISNNIKMFVEDKMLRFKVRGHRMSGDINTSMG
FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK
FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL
FT VLNAGVPILESFYKCLYRSSGYKKVSDEFIKNVISYGTDERLQGRRTFEDTPITNHSRM
FT SYWVSFGVDPKIQQIVERYYDNLTVSAQLQSVKVTTPHLQSILLSIPENHSQNDY"
FT CDS 140. .1159
FT /codon_start=1
FT /product="P1"
FT /note="ORF1"
FT /protein_id="ABY91252.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKAKSGVTEAWNDF
FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEARDNARAAAKIGAEMFAPVDVQNLYSFTEVKKVETGLTKEVVKE
FT KNGEETKHLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQSPEARARRERMDVLDSVGF"
FT CDS 2856. .4832
FT /codon_start=1
FT /transl_except=(pos:3453. .3455,aa:OTHER)
FT /product="aphid transmission protein"
FT /note="P3-P5 fusion created by ribosomal read-through of
FT the ORF3 stop codon"
FT /protein_id="ABY91253.1"
FT /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRRT
FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT
FT NVKVEFKSHASASTVGAMFIELDTSCTQSTLGSYINSFTISKSATKNFTAQQIDGKEFR
FT ESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPKXVDSSTPEPSPQPQPEPKPDPQP
FT TPEPQHKRFFEYVGTPYVIIQTRESSDSIAVKSMNDQSFQYIENETSEQRTVQAWWTSN
FT NGVQAQAAFVFPIPAGEYSVNISCEGLQSVDHIGGNRDGYWIGLIAYQNQSGDYWGVGN
FT YAGCDITNLLGTNTWRPGREDLELNGCKFTNGQIVERDAVISFHVKAQGADPKFYLMAP
FT KTMKSDKYNYVVSYGGYTDKRMEFGSISVTVDESDVEAQRYNRHTSTVRKTENRDYGWM
FT SVLPPYDPNQMPEQEEEQPMVDKEMDSRPPVEPLSPTSDTEAERAFDLREEELTRARLE
FT YEAATESIPDAAPDILPSKSEMSSRLIDHDGRSLPKPQSKEVLGTYQGQNITPDDVPPV
FT IAEKLREVSRAPSTLLYDRQPKTPKSFLSRFVETNKTSLASPGSQSSTSGMTREQASEY
FT TRIRKSMGLTAAKEHKASLADTW"
FT CDS 2856. .3455
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3; P3"
FT /protein_id="ABY91254.1"
FT /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRRT
FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT
FT NVKVEFKSHASASTVGAMFIELDTSCTQSTLGSYINSFTISKSATKNFTAQQIDGKEFR
FT ESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPK"
FT CDS 2893. .3357
FT /codon_start=1
FT /product="movement protein"
FT /note="P4; ORF4 translated via a leaky scanning mechanism"
FT /protein_id="ABY91255.1"
FT /translation="MAQGEQGALAQFGEWLWSNPIEPDQNEELVDAQEEEGQILYLDQQ
FT AGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQRFQVEYSSPTTVTRSQTSRLSLSHTRPP
FT LQSAQCLLNSTLRAHNQPWVATLTHSPSQNQQPKTSPPNRLTGRNSGRAR"
FT CDS 4939. .5070
FT /codon_start=1
FT /product="P6"
FT /note="ORF6; highly variable sequence"
FT /protein_id="ABY91256.1"
FT /translation="MDDLHVIAVCVLSTTVFAAAVLTISAIASVCGSACATANIQRV"
XX
SQ Sequence 5683 BP; 1704 A; 1377 C; 1358 G; 1244 T; 0 other;
eu402387 Length: 5683 13-FEB-2008 Type: N Check: 7641 ..
1 tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca
51 cactcgtttt gtaatcgaga agtagttgca aaaacggtcc tctcatagcc
101 tgactagctg agagccatcc ttctatcccc accgccacca tgttctttga
151 aattcttata ggagctagtg ccaaggcggt caaagatttc atcagccact
201 gctattctag actaaaatct atatattatt ctttcaaacg atggctgatg
251 gaaatatctg ggcaatttaa ggcccatgac gcctttgtca acatgtgctt
301 tgggcacatg gctgacattg aagacttcga ggctgaactc gctgaggagt
351 tcgccgagag ggaggatgag gtggaagagg ccaggagcct cttgaaactg
401 ctggtcgccc aaaaagctaa atccggggtg accgaggctt ggaacgactt
451 ctttttgaag tcgaggggtg gtgtttacgc accgctttct tgtgagccta
501 ccaagcagga actagaagtc aagagcgaaa agctcgagag gcttctagac
551 gaacagcacc aattcgaggt gcgagcggcc aagaaataca tcaaagaaaa
601 gggccgcggc ttcatcaact gctggaacga cttgcgtagt cgtctcagat
651 tggtgaagga cgtcaaggac gaggcgaggg ataacgccag agccgctgcc
701 aagattggag cggaaatgtt cgcccccgtt gacgtacaga acctctacag
751 ctttacagag gtcaagaagg tggagaccgg cctcacaaag gaggtcgtaa
801 aagaaaagaa cggcgaagaa acgaagcacc tcgaacccat cttggaagag
851 gtgcggtcta tcaaggatac cgccgaagct agggacgccg cctccacttg
901 gataacagag acagtcaaat tgaaaaactc aaccctcaat gctgatgaac
951 tgtctctcgc caccatcgcc cgctacgttg aaaatgtagg ggacaaattc
1001 aaactcgaca ttgctagcaa gacatatctt aagcaatgcg cgacgatgtc
1051 tgtaccaatt ccaaccacca aggacatcaa aatgaagatg gtgttgcaga
1101 gccctgaagc acgtgccagg cgggaacgca tggacgtgct tgactctgtg
1151 ggtttttaga ggggctctgt accgcctctg gttttgagag cccatttcca
1201 attctcgggc tgccagagac tgcggtcaca gacggagccc ggctccgtaa
1251 ggttagtagt agtattagat accttagcca aacccaccta ggcttagtat
1301 ataaggcacc aaatgcctcc ctgcacaacg cgcttgtggc agtggagaga
1351 agagttttta cagtaggaaa gggggacaaa cccatttacc ccccccgccc
1401 tgagcacgac attttcactg aaacgatgga ctactttggt aagtccataa
1451 tcgacgaggt gggatactgc aagacatacc cagcgcagct cctggctaac
1501 agttacagcg caggaaaaag ggccatgtac cacaaggcca ttgcatccct
1551 gaaaacaacc ccctatcaac agagggatgc taatgtgcaa gctttcctga
1601 agaaggaaaa acattggatg accaaggaca tcgctccccg attgatatgc
1651 ccccgcagca agcggtacaa cattatccta ggaactcgtt tgaaattcaa
1701 tgagaagaag atcatgcacg ccatcgatag tgtgtttgga tcccccactg
1751 tactttctgg ttatgacaac ttcaagcaag gaaggatcat agccaagaag
1801 tggcaaaagt ttgcatgccc cgtcgccatc ggcgtggatg ctagccgctt
1851 tgaccaacac gtgtcagagc aggcgcttaa gtgggaacac gggatataca
1901 atggaatctt cggtgacagc gagttggctc ttgcacttga acaccaaata
1951 tccaacaaca tcaagatgtt cgtagaggat aagatgctta ggttcaaggt
2001 gagaggccac agaatgtccg gtgacattaa taccagcatg gggaataagc
2051 taataatgtg cggtatgatg cacgcatatt tcaagaagct gggtgttgaa
2101 gctgaactat gcaacaatgg agacgactgt gtcatcatca cagacagagc
2151 caatgagaag ctctttgatg gcatgtacga ccactttctc cagtatggtt
2201 tcaacatggt gaccgaaaaa ccagtttacg aactggaaca attggagttt
2251 tgccagtcaa aaccggtctc tattaatgga aaatacagaa tggtcagaag
2301 gcccgatagc ataggcaaag acagcacaac actactgagc atgctcaacc
2351 aatccgacgt caaaagttac atgtcggctg tggctcagtg tggtttggtg
2401 ctaaacgctg gagtacccat actcgaaagc ttctataaat gcctatatag
2451 aagctctggg tacaagaaag tgagtgatga attcatcaaa aacgtcattt
2501 cgtatggaac agatgagaga ctacaaggta gacgtacctt tgaagacaca
2551 cctatcacta atcatagtag gatgtcctac tgggtatcat tcggagttga
2601 ccctaagata caacaaattg tcgagcggta ctacgacaat cttacggtaa
2651 gtgcccaact ccagagcgtg aaggtgacta ctccacatct gcaatcaata
2701 ctactttcca taccggaaaa ccactcacaa aacgactatt aattaccaaa
2751 tcttagctgg gtttggaata gggtttatag tttctattcc ctgtacatta
2801 gctctctcct actttatcta caataaagtt tctgacacca ctagggaggt
2851 ggtgaatgaa ttcagtaggc cgtagaaata accgcaggag aaatggccca
2901 aggagagcaa ggcgcgctgg cgcagttcgg agaatggttg tggtccaacc
2951 caatcgagcc ggaccaaaac gaagaactcg tcgacgcaca agaggaggag
3001 gggcaaatct tatatctgga ccagcaggca ggactgaggt attcgtattc
3051 tcagtcaacg accttaaggc caactcctca gggacaatca agttcggtcc
3101 cgacctttcg caatgcccag cgctttcagg tggaatactc aagtcctacc
3151 accgttacaa gatcacaaac gtcaaggttg agtttaagtc acacgcgtcc
3201 gcctctacag tcggcgcaat gtttattgaa ctcgacactt cgtgcacaca
3251 atcaaccttg ggtagctaca ttaactcatt caccatctca aaatcagcaa
3301 ccaaaaactt caccgcccaa cagattgacg ggaaggaatt cagggagagc
3351 acggtgaatc aattttatat gctatacaag gcaaatggta gtacatctga
3401 caccgccggg caattcatca ttacaatacg cgttgccaac atgactccca
3451 aataggtaga ctcctcaaca ccagagcctt caccccaacc ccaaccagag
3501 cccaaacctg atccgcagcc aacaccagag cctcaacaca aacggttttt
3551 cgagtacgta ggaacgccct atgttatcat acaaactagg gagagttcgg
3601 atagcattgc cgtcaagtca atgaatgatc aatcctttca gtacatcgaa
3651 aacgaaactt ctgagcaaag aaccgttcag gcatggtgga cctccaacaa
3701 cggcgtccaa gcgcaagcag catttgtatt tcctataccc gctggagagt
3751 atagtgttaa tatttcttgt gaaggtctac aatcagtgga ccacattgga
3801 ggaaaccgag acggatattg gataggttta atagcctacc aaaatcaaag
3851 cggggattat tggggcgtgg gcaactatgc cggctgtgac ataaccaatc
3901 ttctaggaac aaacacttgg cgtccaggcc gtgaagattt ggaattaaac
3951 ggctgcaaat tcactaatgg acagatagtc gagagagacg ctgtgatatc
4001 cttccatgtt aaagctcagg gtgctgaccc caagttttac ctcatggcac
4051 ccaagaccat gaagtctgac aagtacaact atgttgtctc gtatggaggt
4101 tacacagaca aaagaatgga atttggatct atatctgtca ctgtggatga
4151 atccgatgtt gaggcacaac gctacaacag gcacactagc acggttagga
4201 aaacagagaa ccgagattat gggtggatga gcgtcctacc accctatgat
4251 cctaaccaaa tgccagagca agaggaagaa caaccaatgg tcgacaagga
4301 gatggattca agacctcctg tcgaacccct ttccccaacc tccgacactg
4351 aggctgaaag agcctttgac ttgagagagg aagaacttac gagggccaga
4401 cttgaatacg aggcagccac tgaatccata cctgatgctg ccccggacat
4451 tttaccctca aaatctgaga tgagcagtag actaatagac catgatggaa
4501 ggtctttacc aaaacctcag tcaaaagaag tcctcggcac ttaccaaggt
4551 cagaacatca caccagatga tgttcctcct gtcatagctg aaaaattgcg
4601 tgaagtgagc agagcaccat ctactctgct ttacgacagg cagccaaaaa
4651 caccaaaaag ctttctttcc cgttttgtag aaaccaataa aactagcttg
4701 gcttcccctg gttcacagtc ttccacgtca ggaatgacaa gagaacaagc
4751 ctcagaatac accaggatta ggaagtcaat gggcctcacg gcagctaagg
4801 agcacaaagc cagtttagct gacacatggt gaagatcaac accactcgca
4851 aattcggatc ctgggaaaca ggcagaactt cggttcgtaa gctcgggtaa
4901 actagtcctt taccgtcgta tcgtactttg tgtggccgat ggatgatcta
4951 catgtgatag cagtctgtgt actgtctacg acagtgttcg cagcggcagt
5001 gctcacaatt agcgcaattg ctagcgtttg tggcagtgct tgtgcaaccg
5051 ccaacattca aagggtttaa tctgtgatac aacccaccaa aaatacacgg
5101 ggaacaacag gttcagtgag ggggctaacg acccccagca attggctggt
5151 tctgggagac ttaaataacc tcctatagaa cgaagtggaa tccccccact
5201 gatcaaattg ggaagcatgc ttctgtgcta tacactgtcc cagaggacac
5251 tgggtaaaca aatctaacca cccaactcaa tgaaatgaga gcggaggtgg
5301 cggggtgggt gacctcgtga tgtacacccg atcgtcagga ttgaagacgt
5351 taaaactcaa cgacctagtg caagtcgtta aactgactcg ggtggataca
5401 ccacacccgg cctaacttga aggcataccc acgatacgaa acgtgggttt
5451 cttggagcca ctacctgtga tgcaaggtag ggtatgggtc ttagcaagcc
5501 ctgtgccggg aaatggacat aaaccatagc aatcccccaa gtcttttcgg
5551 caaaccacag gtgaaccgtg ccacaggcct gactaccgaa aggaaaatca
5601 gtatccaaca cagcaatgtg ttgggggtca cacccttcgg ggtactctta
5651 acgctgacac tcgaaagagc agttcggcaa ccc