Sequence of DPV Barley yellow dwarf virus-GAV
Barley yellow dwarf virus-GAV isolate 05WN3, complete genome.
ACC No: EU402389
Dated: 2008-02-13 | Length: 5683 | CRC: -823320691
ID EU402389; SV 1; linear; genomic RNA; STD; VRL; 5683 BP.
XX
AC EU402389;
XX
DT 13-FEB-2008 (Rel. 94, Created)
DT 13-FEB-2008 (Rel. 94, Last updated, Version 1)
XX
DE Barley yellow dwarf virus-GAV isolate 05WN3, complete genome.
XX
KW .
XX
OS Barley yellow dwarf virus-GAV
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus; unclassified Luteovirus.
XX
RN [1]
RP 1-5683
RA Liu S., Wang X., Liu Y., Zhou G.;
RT "Nucleotide sequence analysis of the genome of Barley yellow dwarf
RT virus-GAV in China";
RL Unpublished.
XX
RN [2]
RP 1-5683
RA Liu S., Wang X., Liu Y., Zhou G.;
RT ;
RL Submitted (14-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, Institute of Plant Protection, Chinese Acadamy of
RL Agricultural Sciences, 2 West Yuanmingyuan Road, Beijing 100094, China
XX
FH Key Location/Qualifiers
FH
FT source 1. .5683
FT /organism="Barley yellow dwarf virus-GAV"
FT /specific_host="wheat"
FT /isolate="05WN3"
FT /serotype="GAV"
FT /mol_type="genomic RNA"
FT /country="China:Weinan"
FT /virion
FT /db_xref="taxon:224578"
FT CDS join(140. .1156,1156. .2742)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp; P1-P2 fusion created by -1 ribosomal
FT frameshift"
FT /protein_id="ABY91263.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSSKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF
FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE
FT VNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQCPEARARRERMDVLDSVGFL
FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL
FT VAVERRVFTVGKGDKPIYPPRPEHDIFTDTMDYFGKSIIDEVGYCKTYPAQLLANSYSA
FT GKRAMYHKAIASLKTTPYQQRDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR
FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS
FT EQALKWEHGIYNGIFGDSELALALEHQISNNIKMFVEDKMLRFKVRGHRMSGDINTSMG
FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK
FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL
FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTFEDTPITNHSRM
FT SYWESFGVDPKIQQIVERYYDNLTVSAQLQSVKVTTPHLQSILLSIPENHSQNDY"
FT CDS 140. .1159
FT /codon_start=1
FT /product="P1"
FT /note="ORF1"
FT /protein_id="ABY91264.1"
FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSSKRWLMEISGQFKA
FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKSGVTEAWNDF
FT FLKSRGGVYAPLSCEPTKQELEVKSEKLERLLDEQHQFEVRAAKKYIKEKGRGFINCWN
FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLTKEVVKE
FT VNGEETKRLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE
FT NVGDKFKLDIASKTYLKQCATMSVPIPTTKDIKMKMVLQCPEARARRERMDVLDSVGF"
FT CDS 2856. .4832
FT /codon_start=1
FT /transl_except=(pos:3453. .3455,aa:OTHER)
FT /product="aphid transmission protein"
FT /note="P3-P5 fusion created by ribosomal read-through of
FT the ORF3 stop codon"
FT /protein_id="ABY91265.1"
FT /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRRT
FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT
FT NVKVEFKSHASASTVGAMFIELDTSCSQSTLGSYINSFTLSKSATKNFTAQQIDGKEFR
FT ESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPKXVDSSTPEPTPQPQPEPKPDPQP
FT TPKPQHKRFFEYVGTPYAIIQTRESSDSIAVKSMNDQSFQYIENETSEQRTVQAWWTSN
FT NGVQAQAAFVFPIPAGEYSVNISCEGLQSVDHIGGNRDGYWIGLIAYQNQSGDYWGVGN
FT YAGCDITNLLGTNTWRPGHEDLELNGCKFTNGQIVERDAVISFHVKAQGADPKFYLMAP
FT KTMKSDKYNYVVSYGGYTDKRMEFGSISVTVDESDVEAQRYNRHTSTVRKTENRDYGWM
FT SVLPPYDPNQMPEQEEEQPMVDKEMDPRSPVEPPSPTSDTEAERAFDLREEELTRARLE
FT YEAATESIPDAAPDILPSKSEMSSRPIDHDGRSLPKPQSKEVLGTYQGQNITPDDVPPV
FT IAEKLREVNRAPSTLLYDRQPKTPKSFLSRFVETNKTSLASPGSQSSTSGMTREQASEY
FT TRIRKSMGLTAAKEYKASLADTW"
FT CDS 2856. .3455
FT /codon_start=1
FT /product="coat protein"
FT /note="ORF3; P3"
FT /protein_id="ABY91266.1"
FT /translation="MNSVGRRNNRRRNGPRRARRAGAVRRMVVVQPNRAGPKRRTRRRT
FT RGGGANLISGPAGRTEVFVFSVNDLKANSSGTIKFGPDLSQCPALSGGILKSYHRYKIT
FT NVKVEFKSHASASTVGAMFIELDTSCSQSTLGSYINSFTLSKSATKNFTAQQIDGKEFR
FT ESTVNQFYMLYKANGSTSDTAGQFIITIRVANMTPK"
FT CDS 2893. .3357
FT /codon_start=1
FT /product="movement protein"
FT /note="P4; ORF4 translated via a leaky scanning mechanism"
FT /protein_id="ABY91267.1"
FT /translation="MAQGEQGALAQFGEWLWSNPIEPDQNEELVDAQEEEGQILYLDQQ
FT AGLRYSYSQSTTLRPTPQGQSSSVPTFRNAQRFQVEYSSPTTVTRSQTSRLSLSHTRPP
FT LQSAQCLLNSTLRAHNQPWVATLTHSPSQNQQPKTSPPNRLTGRNSGRAR"
FT CDS 4939. .5070
FT /codon_start=1
FT /product="P6"
FT /note="ORF6; highly variable sequence"
FT /protein_id="ABY91268.1"
FT /translation="MDDLHVIAVCVLSTTVFAAAVLTISAIASICGSACATANIQRV"
XX
SQ Sequence 5683 BP; 1714 A; 1379 C; 1349 G; 1241 T; 0 other;
eu402389 Length: 5683 13-FEB-2008 Type: N Check: 3414 ..
1 tgaagattga ccatctcaca aaagctgtta cgtgcttgta acacactaca
51 cactcgtttt gtaatcgaga agtagttgca agaacggtcc tctcattgcc
101 tgactagctg agagccatcc ttctatcccc accgccacca tgttctttga
151 aatacttata ggagctagtg ccaaggcggt caaagatttc atcagccact
201 gctactctag actgaaatct atatattatt cttccaaacg atggctgatg
251 gaaatatctg ggcaatttaa ggcccatgac gcctttgtca acatgtgctt
301 tgggcacatg gctgacattg aagacttcga ggctgaactc gctgaagagt
351 tcgccgagag ggaggatgag gtggaagagg ccaggagcct cttgaaactg
401 ctggtcgccc aaaaatctaa atccggggtg accgaggctt ggaacgactt
451 ctttttgaag tcgaggggtg gagtttacgc accgctctct tgtgagccca
501 ccaagcagga actggaagtc aagagcgaga agctcgagag gcttctagac
551 gaacagcacc aattcgaggt gcgagcggcc aagaaataca tcaaagaaaa
601 gggccgcggc ttcatcaact gctggaacga cttgcgtagc cgtctcagat
651 tggtgaagga tgtcaaggat gaggcgaagg acaacgccaa agccgctgca
701 aagattggag cggaaatgtt cgcccccgtt gacgtgcagg acctctacag
751 ctttacagag gtcaagaagg tggagaccgg cctcacaaag gaggtcgtaa
801 aagaagtgaa cggtgaagaa acaaaacgcc tcgaacccat cttggaagag
851 gtgcgatcca tcaaggacac cgccgaagct agggacgccg cctccacttg
901 gataacagag acagtcaaat tgaaaaattc aacccttaac gctgatgaac
951 tgtctctcgc caccatcgcc cgctacgttg aaaacgtagg ggacaaattc
1001 aaactcgaca ttgccagcaa gacatatcta aagcaatgcg caacgatgtc
1051 tgtaccaatt ccaaccacca aggacatcaa aatgaagatg gtgttgcagt
1101 gtcctgaagc acgtgccagg cgggaacgca tggacgtgct tgactctgtg
1151 ggtttttaga ggggctctgt accgcctctg gttttgagag cccatttcca
1201 attctcgggc tgccagagat tgcggtcaca gacggagccc ggctccgtaa
1251 ggttagtagc aatattagat accttagcca aacccactta ggtttagtat
1301 ataaggcacc aaatgcctcc ctgcacaacg cgcttgtggc agtggagaga
1351 agagttttta cagtaggaaa gggggacaaa cctatttacc ccccccgccc
1401 tgagcacgac attttcactg atacaatgga ctactttggt aagtccataa
1451 tcgacgaggt gggatactgc aagacatacc cagcgcaact cctggctaac
1501 agctatagcg caggaaaaag ggccatgtat cacaaagcca ttgcatccct
1551 aaaaacaacc ccctatcagc agagggatgc taatgtgcaa gctttcctca
1601 agaaggaaaa acattggatg accaaggaca tcgctccccg attgatatgc
1651 ccccgcagca agcggtacaa cattatccta ggaactcgtt tgaaattcaa
1701 cgagaagaag atcatgcacg ccatcgatag tgtgtttgga tcccccactg
1751 tgctttctgg ttatgataac ttcaagcaag gaagaattat agccaagaag
1801 tggcaaaagt ttgcatgccc cgtcgctatc ggcgtggatg ctagccgctt
1851 tgaccaacac gtgtcagagc aggcgcttaa gtgggaacac gggatataca
1901 atggaatctt cggtgatagc gaattggctc ttgcacttga acaccaaata
1951 tccaacaaca tcaaaatgtt cgtagaggat aaaatgctta ggttcaaggt
2001 tagaggccat agaatgtccg gtgacattaa taccagcatg ggaaacaagc
2051 taataatgtg cggcatgatg cacgcatatt tcaagaagct gggtgttgaa
2101 gcagaactat gtaacaatgg agacgactgt gtcatcatca cggacagagc
2151 caatgagaag ctctttgatg gcatgtacga tcactttctc cagtatggtt
2201 tcaacatggt gaccgaaaaa ccagtttacg aactggaaca attggagttt
2251 tgccagtcaa aaccggtctc tattaatgga aaatacagaa tggtcagaag
2301 gcccgatagc ataggcaaag acagcacaac actactgagc atgctcaacc
2351 aatccgacgt caaaagttac atgtcggctg tggctcagtg tggtttggtg
2401 cttaacgctg gagtacccat actcgaaagc ttctataaat gcctatatag
2451 aagctctggg tacaagaaag tgagtgaaga attcatcaaa aacgtcattt
2501 cgtatggaac agatgagaga ctacaaggta gacgtacctt tgaagacaca
2551 cctatcacta atcatagtag gatgtcctac tgggaatcat tcggagttga
2601 ccctaagata caacaaattg tcgagcggta ctacgacaat cttacggtga
2651 gtgcccaact ccagagcgtg aaggtgacta ctccacatct gcaatcaata
2701 ctactttcca taccggaaaa ccactcacaa aacgactatt aattaccaaa
2751 tcttagctgg gtttggaata gggtttatag tttctattcc ctgtacatta
2801 gctctctcct acttcatcta caataaagtt tctgacacca ctagggaggt
2851 ggggaatgaa ttcagtaggc cgtagaaata accgcaggag aaatggccca
2901 aggagagcaa ggcgcgctgg cgcagttcgg agaatggttg tggtccaacc
2951 caatcgagcc ggaccaaaac gaagaactcg tcgacgcaca agaggaggag
3001 gggcaaatct tatatctgga ccagcaggca ggactgaggt attcgtattc
3051 tcagtcaacg accttaaggc caactcctca gggacaatca agttcggtcc
3101 cgacctttcg caatgcccag cgctttcagg tggaatactc aagtcctacc
3151 accgttacaa gatcacaaac gtcaaggttg agtttaagtc acacgcgtcc
3201 gcctctacag tcggcgcaat gtttattgaa ctcgacactt cgtgctcaca
3251 atcaaccttg ggtagctaca ttaactcatt caccctctca aaatcagcaa
3301 ccaaaaactt caccgcccaa cagattgacg ggaaggaatt cagggagagc
3351 acggtgaatc aattttatat gctatacaag gcaaacggta gtacatctga
3401 taccgccggg caatttatca ttacaatacg cgttgccaac atgactccca
3451 aataggtaga ctcctcaaca ccagagccta caccccaacc ccaaccagag
3501 cccaaacctg atccgcagcc aacaccaaag cctcaacaca aacggttttt
3551 cgagtacgta ggaacgccct atgctatcat acaaactagg gagagttcgg
3601 atagcattgc cgtcaagtca atgaatgatc aatcctttca gtacatcgaa
3651 aacgaaactt ctgagcaaag aaccgttcag gcatggtgga cctccaacaa
3701 cggcgtccaa gcgcaagcag catttgtatt tcctatacct gctggagagt
3751 atagtgttaa tatttcttgc gaaggtctac aatcagtgga ccacattgga
3801 ggaaaccgag acggatattg gataggctta atagcctacc aaaaccaaag
3851 cggggattat tggggcgtgg gcaactatgc tggctgtgat ataaccaatc
3901 ttctaggaac aaacacttgg cgtccaggcc atgaagattt ggaattaaac
3951 ggctgcaaat tcactaatgg acagatagtt gaaagagacg ctgtgatatc
4001 cttccatgtt aaagctcagg gtgctgaccc caagttttac ctcatggcac
4051 ccaagaccat gaagtctgac aagtacaact atgttgtctc gtatggaggt
4101 tacacagaca aaagaatgga atttggatcc atatctgtca ctgtggatga
4151 atccgatgtt gaggcacagc gctacaacag gcatactagc acggttagga
4201 aaacagaaaa ccgagattat gggtggatga gtgttctacc accctatgat
4251 cctaaccaaa tgccggagca agaggaagag caaccaatgg tcgataagga
4301 gatggatcca agatctcctg tcgaaccccc ttccccaacc tccgacactg
4351 aggctgaaag agcctttgac ttgagagagg aagaacttac gagggctaga
4401 cttgaatacg aggcagccac tgaatccata cctgatgctg ccccggacat
4451 tttaccctca aaatctgaaa tgagcagtag accaatagac catgatggaa
4501 ggtctttacc aaaacctcag tcaaaagaag tcctcggcac ttaccaaggc
4551 cagaacatca caccagatga tgttcctcct gtcatagctg aaaaattgcg
4601 tgaagtgaac agagcaccat ctactctgct ttacgacagg cagccaaaaa
4651 caccaaaaag ctttctttcc cgtttcgtag aaaccaataa aactagcttg
4701 gcttcccctg gttcacagtc ttccacgtca ggaatgacaa gagaacaagc
4751 ctcagaatac accaggatta ggaagtcaat gggcctcacg gcagctaagg
4801 agtacaaagc cagtttagct gacacatggt gaagatcaac accactcgca
4851 aattcggatc ctgggaaaca ggcagaactt cggttcgtaa gctcgggtaa
4901 actagtcctt taccgtcgta tcgtactttg tgtggccgat ggatgatcta
4951 catgtgatag cagtctgtgt gctgtccacg acagtgttcg cagcggcagt
5001 actcacaatt agcgcaattg ctagtatttg cggcagtgca tgtgcaactg
5051 ccaacattca aagggtttaa tctgtgatac aacccaccaa aaatacacgg
5101 ggaacaacag gttcagcgag ggggctaacg acccccagca attggctggt
5151 tctgggagac ttaaataacc tcctatagaa cgaagtggaa tccccccact
5201 gatcaaattg ggaagcatgc ttctgtgcta tacactgccc cagaggacac
5251 tgggtaaaca aatctaacca cccaactcaa tgaaatgaga gcggaggtgg
5301 cggggtgggt gacctcgtga tgtgcacccg atcgtcagga ttgaagacgt
5351 taaaactcaa cgacctagtg caagtcgtta aactgactcg ggtggataca
5401 ccacacccgg cccaacttgg aggcataccc acgatacgaa acgtgggttt
5451 cttggagcca ctacctgtga tgcaaggtag ggtatgggtc ttagcaagcc
5501 ctgcgccagg aaatggacat aaaccatagc aatcccccaa gtcctctcgg
5551 caagccacag gtgaaacgtg ccacaggcct gactaccgaa aggaaaatca
5601 gtatccaaca cagcaatgtg ttgggggtca cacccttcgg ggtactctta
5651 acgctgacac tcgaaagagc agttcggcaa ccc