Sequence of DPV Soybean dwarf virus
Soybean dwarf virus isolate ClIL3 minor coat protein, major capsid protein, and putative movement protein genes, complete cds.
ACC No: EU419572
Dated: 2009-05-13 | Length: 2073 | CRC: 1868307076
ID EU419572; SV 1; linear; genomic RNA; STD; VRL; 2073 BP.
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AC EU419572;
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DT 13-FEB-2008 (Rel. 94, Created)
DT 13-MAY-2009 (Rel. 100, Last updated, Version 2)
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DE Soybean dwarf virus isolate ClIL3 minor coat protein, major capsid protein,
DE and putative movement protein genes, complete cds.
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KW .
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OS Soybean dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
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RN [1]
RP 1-2073
RX PUBMED; 19360376.
RA Thekke Veetil T., Hobbs H.A., Domier L.L.;
RT "Sequence diversity of readthrough proteins of Soybean dwarf virus isolates
RT from the Midwestern United States";
RL Arch. Virol. 154(5):861-866(2009).
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RN [2]
RP 1-2073
RA Thekke Veetil T., Hobbs H.A., Domier L.L.;
RT ;
RL Submitted (22-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL Dept. Crop Sci., University of Illinois, USDA-ARS, 1102 S. Goodwin Ave.,
RL Urbana, IL 61801, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2073
FT /organism="Soybean dwarf virus"
FT /isolate="ClIL3"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /isolation_source="virus-infected leaf tissue"
FT /note="acronym: SbDV"
FT /db_xref="taxon:12049"
FT CDS 1. .2073
FT /codon_start=1
FT /transl_except=(pos:601. .603,aa:OTHER)
FT /product="minor coat protein"
FT /note="readthrough protein; translated by readthrough of
FT in-frame termination codon"
FT /db_xref="GOA:B1A416"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:B1A416"
FT /protein_id="ABZ80574.1"
FT /translation="MVAVSNVTIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR
FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPKXVDGEPGPKPGPDPTPPPAPPP
FT EPTPAKHERFIVYTGTLSTLISARQNSDSISLYSIRDQRVRYIEDENANWTYIKAQWYS
FT QNSVEAIPMFIYPVPQGTWSVEISCEGYQATSSTTDPHRGKSDGMIAYDDDQTKVWNVG
FT VQNNVTITNNKADADWKYGHPNLTINGERFDQQQVVEKDGTVSFHLVTTGPNASFFLAG
FT PAVKKIAKYNFCISYGAWTDRDMEFGLVSVVLDEHLEGVRGSQYVRKTLRPGHISVNRT
FT HRLQEMPPMREDFSEEDNSSSDSNTYKTDNSPLTVHLVKAGDEENYTTDRSDDVEPTLH
FT DADVMKFSGFVGAKDRFTLQGADPIGPGDRSVRRFRPSATLKSAFHSGPTPDELYNAGA
FT EQADHDFEHFVSRGKEKLQDEDPMAKLEREAEDLKPDSDNEDNDYDRTAPVFNPADGDP
FT WSGIKIKPRLKDQDMRSTLSTGTLKGGSLKPKKEPTPRFEPAPKSVLDRIRRRQV"
FT CDS 1. .603
FT /codon_start=1
FT /product="major capsid protein"
FT /note="coat protein"
FT /db_xref="GOA:Q3YB88"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q3YB88"
FT /protein_id="ABZ80572.1"
FT /translation="MVAVSNVTIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR
FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPK"
FT CDS 17. .586
FT /codon_start=1
FT /product="putative movement protein"
FT /note="P4"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:B1A412"
FT /protein_id="ABZ80573.1"
FT /translation="MSQYNDDVIVEPHEALHEFSSWLFQRPPAQHSAEEDNDDEGEIIE
FT EEAIFPEDQARLTHSSFRRTASMAVPRELSLSGRLYQSASHSLMEYSRPTMNIRSRVSY
FT YSSSPRPLPPRQAPSLMSLTHTASTPKFNRYSINSQLQRAVRNDSPPRLSMASNGMIPV
FT KTSSRSTTRGMETPRSQAPSRSRSLS"
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SQ Sequence 2073 BP; 629 A; 486 C; 485 G; 473 T; 0 other;
eu419572 Length: 2073 13-MAY-2009 Type: N Check: 3303 ..
1 atggtcgcgg ttagcaatgt cacaatacaa cgacgacgta atcgtagagc
51 cgcacgaagc gctccacgag ttcagctcat ggctattcca acgaccaccg
101 gcgcaacaca gcgcagaaga agacaacgac gacgaaggag aaataataga
151 ggaggaggca atatttccgg aggatcaggc aaggctcaca cattccagtt
201 ttcgaaggac ggcatcaatg gcagttccaa gggaactatc actttcgggc
251 cgtctttatc agagtgcaag ccactctctg atggaatact caaggcctac
301 catgaatata agatcacgag tatcttatta cagttcatct ccgaggcctc
351 ttccacctcg tcaggctcca tcgcttatga gcttgaccca cactgcaagt
401 actccgaaat tcaatcgcta ctcaataaat tctcaattac aaagagcggt
451 tcgaaacgat tccccaccaa ggttatcaat ggcctcgaat ggcatgatac
501 cagtgaagac cagttcaagg tccactacaa ggggaatgga gacgccaaga
551 tcgcaggctc cttcaagatc acgatcgttg tcttaactca gaatcccaaa
601 taggtagacg gagaaccggg gccgaagcca ggtccggacc ccacaccccc
651 accagcacca ccacctgaac cgacgccagc caaacatgaa agattcattg
701 tttacaccgg tacactgtca acactcatca gtgctcgaca gaactcagac
751 agtatatcac tctactcaat tcgagaccag agggtcagat atattgaaga
801 tgagaatgca aactggacgt acatcaaagc gcaatggtat tcacagaatt
851 ctgtggaagc aataccaatg tttatctacc cagttccgca aggtacttgg
901 tcagttgaaa tctcatgtga aggttaccag gcaacatcga gcaccacgga
951 tccccaccgg gggaagtccg atggaatgat tgcttatgac gatgatcaaa
1001 ccaaggtgtg gaatgttggt gtgcaaaata atgtaaccat aaccaataat
1051 aaagccgatg ctgattggaa atacggtcac cctaatttaa caattaatgg
1101 tgaacgtttt gaccagcagc aagtagtcga gaaagatgga acggtctcgt
1151 ttcatttagt aactactggg cccaatgcga gtttcttttt agccggccct
1201 gccgttaaga agattgccaa gtataatttc tgtatatcat atggagcttg
1251 gactgatcgc gatatggagt ttggtttggt atctgttgtt ctcgatgaac
1301 acttagaggg tgttagaggt tctcagtacg ttaggaaaac gctaagacca
1351 ggtcatatta gcgtcaatcg tacccaccga ttgcaagaaa tgcctcccat
1401 gcgagaggat ttcagtgagg aagataatag tagtagtgat agtaatacat
1451 acaaaacgga caactctccc ttgaccgttc accttgtaaa agcaggtgac
1501 gaggagaatt atacaacaga tcgatcggac gatgttgaac ccacacttca
1551 tgatgctgat gtcatgaagt tctccgggtt tgttggagcc aaagataggt
1601 ttacgttgca gggcgctgat ccaatcggcc ctggtgacag atctgtccgt
1651 cgcttcagac cgtctgccac attgaagtct gcgttccatt cgggaccgac
1701 tcctgatgag ttgtacaacg ctggtgctga acaagcggat cacgacttcg
1751 aacactttgt ctctcgaggc aaagagaaac tacaggatga agatccaatg
1801 gccaaactcg aaagagaggc tgaggattta aaacctgata gtgataacga
1851 agataacgat tatgatcgaa ccgctcctgt attcaaccca gctgatggtg
1901 acccctggtc aggcattaaa ataaagccta gattaaaaga tcaggatatg
1951 aggtccacct tgagcactgg caccttgaaa ggtggttcac tgaaaccgaa
2001 gaaagaacca accccaaggt ttgaaccagc gccaaagtcc gttttagata
2051 ggattagacg taggcaagtt taa