Sequence of DPV Soybean dwarf virus
Soybean dwarf virus isolate Wisc5 minor coat protein, major capsid protein, and putative movement protein genes, complete cds.
ACC No: EU419574
Dated: 2009-05-13 | Length: 2073 | CRC: -1097062390
ID EU419574; SV 1; linear; genomic RNA; STD; VRL; 2073 BP.
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AC EU419574;
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DT 13-FEB-2008 (Rel. 94, Created)
DT 13-MAY-2009 (Rel. 100, Last updated, Version 2)
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DE Soybean dwarf virus isolate Wisc5 minor coat protein, major capsid protein,
DE and putative movement protein genes, complete cds.
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KW .
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OS Soybean dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
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RN [1]
RP 1-2073
RX PUBMED; 19360376.
RA Thekke Veetil T., Hobbs H.A., Domier L.L.;
RT "Sequence diversity of readthrough proteins of Soybean dwarf virus isolates
RT from the Midwestern United States";
RL Arch. Virol. 154(5):861-866(2009).
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RN [2]
RP 1-2073
RA Thekke Veetil T., Hobbs H.A., Domier L.L.;
RT ;
RL Submitted (22-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL Dept. Crop Sci., University of Illinois, USDA-ARS, 1102 S. Goodwin Ave.,
RL Urbana, IL 61801, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2073
FT /organism="Soybean dwarf virus"
FT /isolate="Wisc5"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /isolation_source="virus-infected leaf tissue"
FT /note="acronym: SbDV"
FT /db_xref="taxon:12049"
FT CDS 1. .2073
FT /codon_start=1
FT /transl_except=(pos:601. .603,aa:OTHER)
FT /product="minor coat protein"
FT /note="readthrough protein; translated by readthrough of
FT in-frame termination codon"
FT /db_xref="GOA:B1A422"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:B1A422"
FT /protein_id="ABZ80580.1"
FT /translation="MVAVSNVTIQRRRNRRASRSAPRVQLMAIPTTTGATQRRRRQRRR
FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPKXVDGEPGPKPGPDPTPPPAPPP
FT EPTPAKHERFIVYTGTLSTLISARQNSDSISLYSIRDQRVRYIEDENANWTYIKAQWYS
FT QNSVEAVPMFIYPVPQGTWSIEISCEGYQATSSTTDPHRGKSDGMIAYDDDQNKVWNVG
FT VQNNVTISNNKADADWKYGHPNLTINGERFDQQQVVEKDGTVSFHLVTTGPNASFFLVG
FT PPVKKIAKYNYCISYGAWTDRDMEFGMVSVVLDEHLEGVRGSQYVRKTLRPGHISVNRS
FT HRLQEMPPMREDFSEEDSSSSDNNTYKTDNSPLTVHLVKAGDEENYTTDRSDDVEPTLH
FT DADVMKFSGFVGAKDRFVLQGADPIGPGDRSVRRFRPSATLKSAFHSGPTPDELYNAGA
FT EQADHDFEHFVSRGKEKLQDEDPMAKLEREAEDLKPDSDNEDNDYDRTAPVFNPADGDP
FT WSGINIKPRLKDQDMRSTLSTGTLKGGSLKPKKEPTPRFEPAPKSVLDRIRRRQV"
FT CDS 1. .603
FT /codon_start=1
FT /product="major capsid protein"
FT /note="coat protein"
FT /db_xref="GOA:B1A423"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:B1A423"
FT /protein_id="ABZ80578.1"
FT /translation="MVAVSNVTIQRRRNRRASRSAPRVQLMAIPTTTGATQRRRRQRRR
FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPK"
FT CDS 17. .586
FT /codon_start=1
FT /product="putative movement protein"
FT /note="P4"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:B1A424"
FT /protein_id="ABZ80579.1"
FT /translation="MSQYNDDAIVEPHEALHEFSSWLFQRPPAQHSAEEDNDDEGEIIE
FT EEAIFPEDQARLTHSSFRRTASMAVPRELSLSGRLYQSASHSLMEYSRPTMNIRSRVSY
FT YSSSPRPLPPRQAPSLMSLTHTASTPKFNRYSINSQLQRAVRNDSPPRLSMASNGMIPV
FT KTSSRSTTRGMETPRSQAPSRSRSLS"
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SQ Sequence 2073 BP; 628 A; 492 C; 484 G; 469 T; 0 other;
eu419574 Length: 2073 13-MAY-2009 Type: N Check: 4374 ..
1 atggtcgcgg ttagcaatgt cacaatacaa cgacgacgca atcgtagagc
51 ctcacgaagc gctccacgag ttcagctcat ggctattcca acgaccaccg
101 gcgcaacaca gcgcagaaga agacaacgac gacgaaggag aaataataga
151 ggaggaggca atatttccgg aggatcaggc aaggctcaca cattccagtt
201 ttcgaaggac ggcatcaatg gcagttccaa gggaactatc actttcgggc
251 cgtctttatc agagtgcaag ccactctctg atggaatact caaggcctac
301 catgaatata agatcacgag tatcttatta cagttcatct ccgaggcctc
351 ttccacctcg tcaggctcca tcgcttatga gcttgaccca cactgcaagt
401 actccgaaat tcaatcgcta ctcaataaat tctcaattac aaagagcggt
451 tcgaaacgat tccccaccaa ggttatcaat ggcctcgaat ggcatgatac
501 cagtgaagac cagttcaagg tccactacaa ggggaatgga gacgccaaga
551 tcgcaggctc cttcaagatc acgatcgttg tcttaactca gaatcccaaa
601 taggtagacg gagaaccggg gccgaaacca ggtccggacc ccacaccccc
651 accagcacca ccacctgaac cgacgccagc caaacatgaa agattcattg
701 tttacaccgg tacactgtca acactcatca gtgctcgaca gaactcagac
751 agtatatcac tctactcaat tcgagaccag agggtcagat atattgaaga
801 tgagaatgca aactggacgt acatcaaagc acaatggtat tcacagaatt
851 ctgtggaagc agtaccaatg tttatctacc cagttccgca aggtacttgg
901 tcaattgaaa tctcatgtga aggctatcag gcgacgtcaa gcaccacgga
951 cccccaccgg gggaagtctg atggaatgat tgcttacgac gatgatcaaa
1001 ataaggtgtg gaatgttggt gtgcaaaaca atgtaaccat ttccaataac
1051 aaagccgacg ctgactggaa atacggtcac cctaatttaa caatcaacgg
1101 tgaacgtttt gaccagcagc aggtagtcga gaaagatgga acagtttcgt
1151 ttcatttagt aactaccggg cccaacgcga gtttcttttt agttggccct
1201 cccgttaaga agattgccaa gtacaactac tgtatatcat acggggcttg
1251 gacagaccgc gacatggaat ttggaatggt ctctgttgtt ctcgatgaac
1301 atttagaggg tgttagaggt tctcagtacg ttagaaaaac gctaagacca
1351 ggtcatatta gcgtcaatcg ttcccaccga ttgcaagaaa tgcctcccat
1401 gcgagaggat ttcagtgagg aagatagtag tagtagtgat aataatacat
1451 ataaaacgga caattctccc ttgactgttc accttgtaaa agcaggtgac
1501 gaggagaatt atacaacaga tcgatcggac gatgttgaac ccacactcca
1551 tgatgctgat gtcatgaagt tctccgggtt tgttggagct aaagataggt
1601 ttgtgttgca gggcgctgat ccaatcggcc ctggtgacag atctgtccgt
1651 cgcttcagac cgtctgcaac attgaagtct gcgttccatt cgggaccgac
1701 tcctgatgag ttgtacaacg ctggcgctga acaagcggat cacgacttcg
1751 aacactttgt ctctcgaggc aaagagaagc tacaggatga agatccaatg
1801 gccaaactcg aaagagaggc tgaggattta aaacctgata gtgacaacga
1851 agataacgat tatgatcgaa ccgctcctgt gttcaaccca gcagatggtg
1901 atccctggtc tggcattaat attaagccta gattaaaaga tcaggatatg
1951 aggtctacct taagcactgg caccttgaaa ggtggttcac tgaaaccgaa
2001 gaaagaacca accccaaggt ttgagccagc gccaaagtcc gttttagata
2051 ggattagacg taggcaagtt taa