Sequence of DPV Soybean dwarf virus
Soybean dwarf virus isolate Wisc7 minor coat protein, major capsid protein, and putative movement protein genes, complete cds.
ACC No: EU419579
Dated: 2009-05-13 | Length: 2073 | CRC: -714924266
ID EU419579; SV 1; linear; genomic RNA; STD; VRL; 2073 BP.
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AC EU419579;
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DT 13-FEB-2008 (Rel. 94, Created)
DT 13-MAY-2009 (Rel. 100, Last updated, Version 2)
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DE Soybean dwarf virus isolate Wisc7 minor coat protein, major capsid protein,
DE and putative movement protein genes, complete cds.
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KW .
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OS Soybean dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
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RN [1]
RP 1-2073
RX PUBMED; 19360376.
RA Thekke Veetil T., Hobbs H.A., Domier L.L.;
RT "Sequence diversity of readthrough proteins of Soybean dwarf virus isolates
RT from the Midwestern United States";
RL Arch. Virol. 154(5):861-866(2009).
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RN [2]
RP 1-2073
RA Thekke Veetil T., Hobbs H.A., Domier L.L.;
RT ;
RL Submitted (22-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL Dept. Crop Sci., University of Illinois, USDA-ARS, 1102 S. Goodwin Ave.,
RL Urbana, IL 61801, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2073
FT /organism="Soybean dwarf virus"
FT /isolate="Wisc7"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /isolation_source="virus-infected leaf tissue"
FT /note="acronym: SbDV"
FT /db_xref="taxon:12049"
FT CDS 1. .2073
FT /codon_start=1
FT /transl_except=(pos:601. .603,aa:OTHER)
FT /product="minor coat protein"
FT /note="readthrough protein; translated by readthrough of
FT in-frame termination codon"
FT /db_xref="GOA:B1A437"
FT /db_xref="InterPro:IPR002929"
FT /db_xref="UniProtKB/TrEMBL:B1A437"
FT /protein_id="ABZ80595.1"
FT /translation="MVAVSNVTIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR
FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPKXVDGEPGPKPGPDPTPPPAPPP
FT EPTPAKHERFIVYTGTLSTLISARQNSDSISLYSIRDQRVRYIEDENANWTYIKAQWYS
FT QNSVEAVPMFIYPVAQGTWSIEISCEGYQATSSTTDPHRGKSDGMIAYDDDQNKVWNVG
FT VQNNVTISNNKADADWKYGHPNLTINGERFDQQQVVEKDGTVSFHLVTTGPNASFFLVG
FT PPVKKIAKYNYCISYGAWTDRDMEFGMVSVVLDEHLEGVRGSQYVRKTLRPGHISVNRS
FT HRLQEMPPMREDFSEEDNSSSDSNTYKTDNSPLTVHLVKAGDEENYTTDRSDDVEPTLH
FT DADVMKFSGFVGAKDRFTLQGADPIGPGDRSVRRFRPSATLKSAFHSGPTPDELYNAGA
FT EQADHDFEHFVSRGKEKLQDEDPMAKLEREAEDLKPDSDNEDNDYDRTAPVFNPADGDP
FT WSGIKIKPRLKDQDMRSTLSTGTLKGGSLKPKKEPTPRFEPAPKSVLDRIRRRQV"
FT CDS 1. .603
FT /codon_start=1
FT /product="major capsid protein"
FT /note="coat protein"
FT /db_xref="GOA:Q3YB88"
FT /db_xref="InterPro:IPR001517"
FT /db_xref="UniProtKB/TrEMBL:Q3YB88"
FT /protein_id="ABZ80593.1"
FT /translation="MVAVSNVTIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR
FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPK"
FT CDS 17. .586
FT /codon_start=1
FT /product="putative movement protein"
FT /note="P4"
FT /db_xref="InterPro:IPR001964"
FT /db_xref="UniProtKB/TrEMBL:B1A439"
FT /protein_id="ABZ80594.1"
FT /translation="MSQYNDDAIVEPHEALHEFSSWLFQRPPAQHSAEEDNDDEGEIIE
FT EEAIFPEDQARLTHSSFRRTASMAVPRELSLSGRLYQSASHSLMEYSKPTMNIRSRVSY
FT YSSSPRPLPPRQAPSLMSLTHTASTPKFNRYSINSQLQRAVRNDSPPRLSMASNGMIPV
FT KTSSRSTTRGMETPRSQAPSRSRSLS"
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SQ Sequence 2073 BP; 629 A; 489 C; 485 G; 470 T; 0 other;
eu419579 Length: 2073 13-MAY-2009 Type: N Check: 5123 ..
1 atggtcgcgg ttagcaatgt cacaatacaa cgacgacgca atcgtagagc
51 cgcacgaagc gctccacgag ttcagctcat ggctattcca acgaccaccg
101 gcgcaacaca gcgcagaaga agacaacgac gacgaaggag aaataataga
151 ggaggaggca atatttccgg aggatcaggc aaggctcaca cattccagtt
201 ttcgaaggac ggcatcaatg gcagttccaa gggaactatc actttcgggc
251 cgtctttatc agagtgcaag ccactctctg atggaatact caaagcctac
301 catgaatata agatcacgag tatcttatta cagttcatct ccgaggcctc
351 ttccacctcg tcaggctcca tcgcttatga gcttgaccca cactgcaagt
401 actccgaaat tcaatcgcta ctcaataaat tctcaattac aaagagcggt
451 tcgaaacgat tccccaccaa ggttatcaat ggcctcgaat ggcatgatac
501 cagtgaagac cagttcaagg tccactacaa ggggaatgga gacgccaaga
551 tcgcaggctc cttcaagatc acgatcgttg tcttaactca gaatcccaaa
601 taggtagacg gagaaccggg gccgaaacca ggtccggacc ccacaccccc
651 accagcacca ccacctgaac cgacgccagc taaacatgaa agattcattg
701 tttacaccgg tacactgtca acactcatca gtgctcgaca gaactcagac
751 agtatatcac tctactcaat tcgagaccag agggtcagat atattgaaga
801 tgagaatgca aactggacgt acatcaaagc tcaatggtat tcacagaatt
851 ctgtggaagc agtaccaatg tttatttacc cagttgcgca aggtacttgg
901 tcaattgaaa tctcatgtga aggttaccag gcgacgtcaa gcaccacgga
951 cccccaccgg gggaagtctg atggaatgat tgcttacgac gatgatcaaa
1001 ataaggtgtg gaatgttggt gtgcaaaaca atgtaaccat ttccaataac
1051 aaagccgacg ctgactggaa atatggtcat cctaatttaa caatcaatgg
1101 tgaacgtttt gaccagcagc aggtagtcga gaaagatgga acagtttcgt
1151 ttcatttagt aactaccggg cccaacgcga gtttcttttt agttggccct
1201 cccgttaaga agattgccaa gtacaactac tgtatatcat acggggcttg
1251 gacagaccgc gacatggaat ttggaatggt ctctgttgtt ctcgatgaac
1301 atttagaggg tgttagaggt tctcagtacg ttaggaaaac gctaagacca
1351 ggtcatatta gcgtcaatcg ttcccaccga ttgcaagaaa tgcctcccat
1401 gcgagaggat ttcagtgagg aagataatag tagtagtgat agtaatacat
1451 ataaaacgga caattctccc ttgactgttc accttgtaaa agcaggtgac
1501 gaggagaatt atacaacaga tcgatcggac gatgttgaac ccacacttca
1551 tgatgctgat gtcatgaagt tctccgggtt tgttggagct aaagataggt
1601 ttacgttgca gggagctgac ccaatcggtc ccggtgacag atctgtccgt
1651 cgcttcagac cgtctgccac attgaagtct gcgttccatt cgggaccgac
1701 tcctgatgag ttgtacaacg ctggtgctga acaagcggat cacgacttcg
1751 aacactttgt ctcccgaggc aaagagaagc tacaggatga agatccaatg
1801 gccaaactcg aaagagaagc tgaggattta aaacctgata gtgacaacga
1851 agataacgat tatgatcgaa ccgctcctgt gttcaaccca gcagatggtg
1901 acccctggtc tggcattaaa attaagccta gattaaaaga tcaggatatg
1951 aggtccacct tgagcactgg caccttgaaa ggtggttcac tgaaaccgaa
2001 gaaagaacca accccaaggt ttgagccagc gccaaagtcc gttttagata
2051 ggattagacg taggcaagtt taa