Sequence of DPV Potato virus M

Potato virus M coat protein gene, partial cds; and 11 kDa protein gene, complete cds.

ACC No: EU433398

Dated: 2008-05-03 | Length: 982 | CRC: 1821282938

                ID   EU433398; SV 1; linear; genomic RNA; STD; VRL; 982 BP.
XX
AC   EU433398;
XX
DT   21-FEB-2008 (Rel. 94, Created)
DT   03-MAY-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Potato virus M coat protein gene, partial cds; and 11 kDa protein gene,
DE   complete cds.
XX
KW   .
XX
OS   Potato virus M
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Carlavirus.
XX
RN   [1]
RP   1-982
RX   DOI; 10.1016/j.jviromet.2008.02.004.
RX   PUBMED; 18353450.
RA   Nie X., Bai Y., Molen T.A., Desjardins D.C.;
RT   "Development of universal primers for detection of potato carlaviruses by
RT   RT-PCR";
RL   J. Virol. Methods 149(2):209-216(2008).
XX
RN   [2]
RP   1-982
RA   Nie X., Bai Y., Molen T.A., Desjardins D.C.;
RT   ;
RL   Submitted (28-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL   Agriculture and Agri-Food Canada, Potato Research Centre, 850 Lincoln Road,
RL   Fredericton, NB E3B4Z7, Canada
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .982
FT                   /organism="Potato virus M"
FT                   /specific_host="potato"
FT                   /mol_type="genomic RNA"
FT                   /country="Canada"
FT                   /PCR_primers="fwd_name: Car-F1, fwd_seq:
FT                   cnrtbtcnaayaayatggc, rev_name: dT-B, rev_seq:
FT                   acgcttttttttttttttttb"
FT                   /db_xref="taxon:12167"
FT   CDS             <1. .572
FT                   /codon_start=3
FT                   /product="coat protein"
FT                   /protein_id="ACA05832.1"
FT                   /translation="VSNNMATSEDMMRIYVNLEGLGVPTEYVQQVVIQAVLFCKDASSS
FT                   VYLDPRGSFEWPRGAIIADAVLAVMKKDAETLRRVCRLYAPVTWNHMLAHNSPPADWAA
FT                   MGFQYEDRFAAFDCFDYVENTAAVQPLEGLIRRPTPREKVAHNTHKDIALRGANRNQVF
FT                   SSLNAEVTGGMNGPELTRDFSKSNNK"
FT   CDS             569. .895
FT                   /codon_start=1
FT                   /product="11 kDa protein"
FT                   /note="nucleic acid-binding protein"
FT                   /protein_id="ACA05833.1"
FT                   /translation="MKCVTQTALLVARALFLHSGVFVFELVYLISTRAGRPLGGGQSKY
FT                   ARRRRAIAAGRCHRCYRLWPPTVSTVKCDNRSCVPGISYNVRVAQQIDEGVTEVIPSVI
FT                   QREE"
XX
SQ   Sequence 982 BP; 253 A; 207 C; 275 G; 247 T; 0 other;

eu433398 Length: 982  03-MAY-2008  Type: N  Check: 8309  ..

       1  cggtgtcgaa caacatggcc acatctgagg acatgatgcg catctacgtc
      51  aatcttgaag gcttgggcgt gccgactgag tacgtgcagc aagtggtgat
     101  ccaagcggtg cttttctgca aagatgcaag tagctcggtg tatctcgatc
     151  cacgcggctc cttcgaatgg ccaaggggtg cgatcatagc agatgcggtg
     201  ttggcggtga tgaagaaaga cgcagagacc ctgcgcagag tctgtaggct
     251  gtacgcgccc gtcacgtgga atcatatgct ggcgcacaat tctccaccag
     301  cagactgggc ggctatgggt ttccagtatg aggatagatt tgcggccttt
     351  gattgctttg actacgtgga gaatacagct gcagttcaac cgctggaagg
     401  gctaatacgc cgtcccactc caagagagaa ggttgcgcac aatacccata
     451  aggatatagc tctgagaggg gctaatcgca accaggtgtt tagttcgctc
     501  aacgctgagg taactggagg tatgaatggt cccgagctca ctagggattt
     551  cagcaaatcg aataataaat gaagtgtgtg acccaaactg cgttgctcgt
     601  agctagggct ttgtttttgc attctggtgt gtttgtgttt gagttagtgt
     651  atttaatttc tacacgtgct ggccgaccgc ttgggggcgg gcagtctaag
     701  tatgcacgtc gcagacgtgc gatagctgca gggaggtgtc acaggtgtta
     751  ccgcctgtgg ccgcccactg tatctactgt taagtgtgac aataggagtt
     801  gtgtaccagg catttcttac aatgtgcgcg tggcgcagca gatagatgaa
     851  ggagtaaccg aggtgatacc ttcagtcatc caaagggagg agtagccatc
     901  aaatcctatt taatatataa agtgtgctac tataaataaa actaggtttt
     951  taactatttt tagcctaaaa aaaaaaaaaa aa