Sequence of DPV Potato virus S

Potato virus S coat protein gene, partial cds; and 11 kDa protein gene, complete cds.

ACC No: EU433399

Dated: 2008-05-03 | Length: 966 | CRC: 453708961

                
ID   EU433399; SV 1; linear; genomic RNA; STD; VRL; 966 BP.
XX
AC   EU433399;
XX
DT   21-FEB-2008 (Rel. 94, Created)
DT   03-MAY-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Potato virus S coat protein gene, partial cds; and 11 kDa protein gene,
DE   complete cds.
XX
KW   .
XX
OS   Potato virus S
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC   Carlavirus.
XX
RN   [1]
RP   1-966
RX   DOI; 10.1016/j.jviromet.2008.02.004.
RX   PUBMED; 18353450.
RA   Nie X., Bai Y., Molen T.A., Desjardins D.C.;
RT   "Development of universal primers for detection of potato carlaviruses by
RT   RT-PCR";
RL   J. Virol. Methods 149(2):209-216(2008).
XX
RN   [2]
RP   1-966
RA   Nie X., Bai Y., Molen T.A., Desjardins D.C.;
RT   ;
RL   Submitted (28-JAN-2008) to the EMBL/GenBank/DDBJ databases.
RL   Agriculture and Agri-Food Canada, Potato Research Centre, 850 Lincoln Road,
RL   Fredericton, NB E3B4Z7, Canada
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .966
FT                   /organism="Potato virus S"
FT                   /specific_host="potato"
FT                   /mol_type="genomic RNA"
FT                   /country="Canada"
FT                   /PCR_primers="fwd_name: Car-F1, fwd_seq:
FT                   cnrtbtcnaayaayatggc, rev_name: dT-B, rev_seq:
FT                   acgcttttttttttttttttb"
FT                   /db_xref="taxon:12169"
FT   CDS             <1. .569
FT                   /codon_start=3
FT                   /product="coat protein"
FT                   /protein_id="ACA05834.1"
FT                   /translation="VSNNMANTEQMAQITADIAGLGVPTEHVAGVILKVVIMCASVSSS
FT                   VYLDPAGTVEFPIGAVPLDSIIAIMKNRAGLRKVCRLYAPVVWNYMLVQNRPPSDWQAM
FT                   GFQWNARFAAFDTFDYVTNGAAIQPVEGLIRRPTPEETIAHNAHKSMAIDKSNRNERLA
FT                   NTNVEYTGGMLGAEIVRNHRNAINQ"
FT   CDS             566. .850
FT                   /codon_start=1
FT                   /product="11 kDa protein"
FT                   /note="nucleic acid-binding protein"
FT                   /protein_id="ACA05835.1"
FT                   /translation="MKADRLATLLLCVHRLGCVLPVEVCVNIISLSAGPISRGRSTYAR
FT                   KRRARSIGRCWRCYRVYPPICNSKCDNRTCRPGISQNYKVVTFIRGWSN"
XX
SQ   Sequence 966 BP; 281 A; 195 C; 249 G; 241 T; 0 other;

eu433399 Length: 966  03-MAY-2008  Type: N  Check: 8921  ..

       1  cagtgtcgaa taacatggcg aacaccgagc aaatggcaca aatcactgca
      51  gacatcgctg gacttggggt ccccactgaa catgttgcag gggtcatact
     101  gaaggtggtg atcatgtgtg caagcgtgag tagctctgtt tatctagatc
     151  cagcagggac tgtggagttc ccaataggcg cagtgccctt ggactcgatc
     201  atagcaatta tgaagaatcg cgcgggattg aggaaagtgt gcaggctgta
     251  tgctccagtc gtgtggaatt acatgctagt ccagaatagg ccgccctcgg
     301  attggcaggc tatgggattc caatggaatg cacgcttcgc cgcatttgac
     351  acattcgatt atgtgactaa tggggctgca atccagcccg tagaggggct
     401  catacgtagg cccacgcctg aggaaacaat agctcacaat gcccacaaga
     451  gtatggcaat tgacaagtcg aacagaaatg agcgattggc caacactaat
     501  gttgagtaca ctggagggat gcttggcgct gagattgtgc gcaatcaccg
     551  taatgcgatc aaccaatgaa ggcagaccgt ttagccacgt tattattgtg
     601  tgtccatcga ctaggatgtg tgttgccagt tgaagtttgt gtaaatataa
     651  taagcctaag cgcaggtcca atttctaggg gtcgttccac ttacgctcgt
     701  aagcggaggg cccgcagcat tgggcgatgc tggcgatgtt atcgtgtcta
     751  tccacctatt tgtaattcta agtgtgataa tagaacatgc cgtccaggca
     801  ttagtcaaaa ttataaagta gtgactttca ttcggggttg gagtaactga
     851  ggtgatacca cccatgatgc aaagtcagag tttcgcataa aacttaaata
     901  atatataagt gtgcaactat aaagaaaata tgtttttaaa atattttagc
     951  aaaaaaaaaa aaaaaa