Sequence of DPV Beet necrotic yellow vein virus

Beet necrotic yellow vein virus haplotype Roc09 p25 gene, complete cds.

ACC No: EU480539

Dated: 2008-06-04 | Length: 1367 | CRC: 311489253

                
ID   EU480539; SV 1; linear; genomic RNA; STD; VRL; 1367 BP.
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AC   EU480539;
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DT   11-MAR-2008 (Rel. 95, Created)
DT   04-JUN-2008 (Rel. 96, Last updated, Version 2)
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DE   Beet necrotic yellow vein virus haplotype Roc09 p25 gene, complete cds.
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KW   .
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OS   Beet necrotic yellow vein virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Benyvirus.
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RN   [1]
RP   1-1367
RX   PUBMED; 18423510.
RA   Acosta-Leal R., Fawley M.W., Rush C.M.;
RT   "Changes in the intraisolate genetic structure of Beet necrotic yellow vein
RT   virus populations associated with plant resistance breakdown";
RL   Virology 376(1):60-68(2008).
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RN   [2]
RP   1-1367
RA   Acosta-Leal R., Fawley M.W., Rush C.M.;
RT   ;
RL   Submitted (11-FEB-2008) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, AgriLife Research, TAMU, 6500 Amarillo Blvd. West,
RL   Amarillo, TX 79106, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1367
FT                   /organism="Beet necrotic yellow vein virus"
FT                   /segment="RNA 3"
FT                   /isolate="Roc"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /haplotype="Roc09"
FT                   /virion
FT                   /db_xref="taxon:31721"
FT   CDS             319. .978
FT                   /codon_start=1
FT                   /product="p25"
FT                   /db_xref="InterPro:IPR008419"
FT                   /db_xref="UniProtKB/TrEMBL:Q59HP3"
FT                   /protein_id="ACA53251.1"
FT                   /translation="MGDILGAVYDLGHRPYLARRTVYEDRLILSTHGNICRAINLLTHD
FT                   NRTTLVYHNNTKRIRFRGLLCALHGPYCGFRALCRVMLCSLPRLCDIPINGSRDFVADP
FT                   TRLDSSVNELLVSNGLVIHYDRVHHVPLHTDGFEVVDFTTVFRGPGNFLLPNATNFPRP
FT                   TTTDQVYMVCLVNTVNCVLRFESELTVWVHSGLYTGDVLDVDNNVIQAPDGVDDDD"
XX
SQ   Sequence 1367 BP; 339 A; 235 C; 294 G; 499 T; 0 other;

eu480539 Length: 1367  04-JUN-2008  Type: N  Check: 7829  ..

       1  caaattgagt gtcaagtgaa taagcatagt gaccccatcg tttcagggta
      51  gttgacggct attaatagac atattacaaa cgcttctctt tatttatcac
     101  caacatggga tgtaatgttt atgcgtgagc ctacggccgc attgtaaaat
     151  tagtggtttt gaatttctat tcttcggaat atacaaggtt taaaagacca
     201  gcatttgggt taaaaatttt taaaccttac tatccttaac tagtaactcg
     251  aactcgattt atattcagat tttaaatatc aagttgttgt gttttctgat
     301  catcattaag tgaccgtcat gggtgatata ttaggcgcag tttatgattt
     351  agggcacaga ccttacctag cacggcgtac ggtttatgag gatcgtttga
     401  ttcttagcac acatggtaat atctgtcggg ctattaactt gttaactcac
     451  gataatcgta ctacactggt gtatcacaat aatactaaac gcataaggtt
     501  tcgtggatta ttgtgtgctc ttcatgggcc ttattgtggg tttcgtgcct
     551  tatgtagagt aatgttatgt tctctacctc gtttgtgtga catccctatc
     601  aatggatctc gcgactttgt tgcagatcct accagactcg acagctctgt
     651  taatgagttg ctggtttcta atggtctcgt tatccactat gatcgtgttc
     701  atcatgttcc cttacacact gatggttttg aagttgtaga tttcacgact
     751  gtctttcgtg gtcctggaaa ctttcttttg cctaatgcaa caaatttccc
     801  tcggccaacc acaaccgatc aggtttacat ggtgtgtttg gtaaacacgg
     851  ttaattgtgt gttacgtttt gagtccgaac ttacagtgtg ggttcactct
     901  ggtttgtata caggtgatgt tttagatgtg gataataatg ttattcaagc
     951  ccctgacggt gttgatgatg atgattagag ttatcacaat ttcaacaaca
    1001  cacttattgg tgtgttgttc tgttacacca tttgaaagtt taataattgt
    1051  ctcaattcga ttgttgatct ggttgggaca attattttat tttcttttgg
    1101  tgtaatcgtc cgaagacgtt aaactacacg tgatttcacg gtgttcgatg
    1151  agaagattgt ttaacggtgt tacgttgtgt acctttaagc tttcttctca
    1201  ttttaccaca tgtgatgatt gtagcctgtg ggttgttatg tggacaatta
    1251  tggttactta tttgtaaatg ataaagagtg tgcggtagcc gactttatgc
    1301  gagtgggagt agttgtgtta ttactactat tctggttcgt ataaagatcc
    1351  ttgacggcgg catcgtg