Sequence of DPV Tomato leaf curl Cebu virus
Tomato leaf curl virus clone AFPL3-2 segment A, complete sequence.
ACC No: EU487008
Dated: 2011-05-01 | Length: 2722 | CRC: -1005528076
ID EU487008; SV 2; circular; genomic DNA; STD; VRL; 2722 BP.
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AC EU487008;
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DT 11-MAR-2008 (Rel. 95, Created)
DT 01-MAY-2011 (Rel. 108, Last updated, Version 3)
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DE Tomato leaf curl virus clone AFPL3-2 segment A, complete sequence.
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KW .
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OS Tomato leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2722
RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M.U., Green S.K., Kenyon L.,
RA Jan F.J.;
RT "Distribution and genetic diversity of begomoviruses infecting tomato and
RT pepper plants in the Philippines";
RL Ann. Appl. Biol. 158(3):275-287(2011).
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RN [2]
RP 1-2722
RA Tsai W.S., Shih S.L., Venkatesan S.G., Aquino M., Huang Y.C., Green S.K.,
RA Jan F.-J.;
RT "Molecular identification of Solanaceae- and Cucurbitaceae-infecting
RT begomoviruses in the Philippines";
RL Unpublished.
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RN [3]
RP 1-2722
RA Shih S.L., Kuo C.G., Lin L.J., Green S.K.;
RT ;
RL Submitted (13-FEB-2008) to the EMBL/GenBank/DDBJ databases.
RL Virology, AVRDC-The World Vegetable Center, P.O. Box 42, Shanhua, Taiwan,
RL Republic of China
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RN [4]
RC Sequence update by submitter
RP 1-2722
RA Shih S.L., Kuo C.G., Lin L.J., Green S.K.;
RT ;
RL Submitted (16-AUG-2010) to the EMBL/GenBank/DDBJ databases.
RL Virology, AVRDC-The World Vegetable Center, P.O. Box 42, Shanhua, Taiwan,
RL Republic of China
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CC On Aug 16, 2010 this sequence version replaced gi:169260855.
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FH Key Location/Qualifiers
FH
FT source 1. .2722
FT /organism="Tomato leaf curl virus"
FT /segment="A"
FT /mol_type="genomic DNA"
FT /country="Philippines:Midanao"
FT /isolation_source="chili"
FT /clone="AFPL3-2"
FT /db_xref="taxon:28350"
FT gene 96. .449
FT /gene="V2"
FT CDS 96. .449
FT /codon_start=1
FT /gene="V2"
FT /product="pre-coat protein"
FT /db_xref="GOA:B1PR41"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:B1PR41"
FT /protein_id="ACA52108.1"
FT /translation="MANMWDPLVHPFPESLHGFRCMLAIKYLQSLQGKYSPDTVGHEFL
FT KDFICILRSRNYAEAFNRYSDVVANVYNTSEAQLRESVQSPCLCPHCPRHVLQAKVVDL
FT QANVSQAQDVQNV"
FT gene 265. .1041
FT /gene="V1"
FT CDS 265. .1041
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /db_xref="GOA:B1PR42"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:B1PR42"
FT /protein_id="ACA52109.2"
FT /translation="MPKRSIDTVTSLPMSITRRRLNYGSQYSLPASVPTVPDMSYKRRS
FT WTYRPMYRKPKMYRMYRSRDVPRGCEGSCKVQSYEQRHDIAHVGKVICVSDVTRGNGLT
FT HRVGKRFCVKSVYVLGKVWMDENIKTKNHTNTVMFFLVRDRRPYGTPQDFGQVFNMYDN
FT EPSTATVKNDNRDRYQVLRRFQATVTGGQYASKEQAIVKKFMKINNHVTYNHQEAAKYD
FT NHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN"
FT gene complement(1038. .1442)
FT /gene="C3"
FT CDS complement(1038. .1442)
FT /codon_start=1
FT /gene="C3"
FT /product="replication enhancement protein"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:B1PR43"
FT /protein_id="ACA52110.1"
FT /translation="MDSRTGGLITAAQAENGVYTWTITNPLYFKISQHDERPFLGNHDI
FT ITVQIQFNHNLRKALGIHQCFLICKIWTRLRPQTWRFLRVFKYHCMKYLDSLGVISINN
FT VIRAFDYVLYDVLEKTIDVQISHIIKFNIY"
FT gene complement(1183. .1590)
FT /gene="C2"
FT CDS complement(1183. .1590)
FT /codon_start=1
FT /gene="C2"
FT /product="transcriptional activation protein"
FT /db_xref="GOA:B1PR44"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:B1PR44"
FT /protein_id="ACA52111.1"
FT /translation="MQNSSPSQNHCTQVPIKVQHKIAKQRPIRRRRIDLPCGCSYYLGL
FT NCASYGFSHRGTHHCSSGREWRIYLDDNKSPIFQDIPTRREAVPGEPRYHNGTNTVQPQ
FT PEESVGNTSMFSDLQNLDSFTSSDLAFLKSI"
FT gene complement(1490. .2578)
FT /gene="C1"
FT CDS complement(1490. .2578)
FT /codon_start=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /db_xref="GOA:B1PR45"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:B1PR45"
FT /protein_id="ACA52112.1"
FT /translation="MAPPRQFRINAKNYFLTYPQCSLTKDVALSQLQNLETPTNKKYIK
FT ICRELHADGSPHLHVLIQFEGKFQCKNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI
FT NKDGDTVEWGKFQVDGRSARGGQQTANDAYAKAINTGSKSEALNVIRELAPKDYILQFH
FT NLNANLDRIFAPPLEVFVCPFLPSSFDQVPREIEEWVSENVRDAAARPWRPISIVIEGN
FT SRTGKTMWARSLGQHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEVKNSELKNWALKNAEFITITKPL
FT YSGTHQSPTQNSQAETNTQAEN"
FT gene complement(2131. .2421)
FT /gene="C4"
FT CDS complement(2131. .2421)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:B1PR46"
FT /protein_id="ACA52113.1"
FT /translation="MGALISMCSSSSKGSSNARIKDSSIWYPQPDQHISIQTFRELNQV
FT PMSNPILIKTETPSNGVSFRSTEDLLEGVNKQPMMLTPKQLTQEVSRRLLM"
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SQ Sequence 2722 BP; 734 A; 522 C; 595 G; 871 T; 0 other;
eu487008 Length: 2722 01-MAY-2011 Type: N Check: 1168 ..
1 accgtgggac gcgccttttt tttaaccaat catattggac cttgacagct
51 atttaaagtg cattctgcac cataaaagag ttttctttat aggtaatggc
101 gaacatgtgg gatcctctag ttcacccctt ccctgaaagc ttgcacggct
151 ttagatgtat gcttgccatc aaatatcttc aaagcttaca gggcaaatat
201 tctccggata ctgttgggca tgagtttttg aaagatttta tatgtatttt
251 gcgtagtagg aattatgccg aagcgttcaa tagatacagt gacgtcgttg
301 ccaatgtcta taacacgtcg gaggctcaat tacgggagtc agtacagtct
351 ccctgcctct gtccccactg tcccagacat gtcttacaag cgaaggtcgt
401 ggacttacag gccaatgtat cgcaagccca agatgtacag aatgtataga
451 agccgtgatg ttcctcgtgg gtgtgaaggc tcgtgtaagg ttcagtccta
501 tgagcagcgc catgatatag cccatgtggg taaggtcata tgtgtttctg
551 acgtcactcg tggtaatggg cttacacatc gtgttggaaa gaggttttgt
601 gtaaagtctg tgtatgtgtt ggggaaggtc tggatggatg agaacatcaa
651 gactaagaat catactaaca ctgtcatgtt ttttttagta cgtgatagga
701 ggccatatgg gactccccag gattttggtc aggtttttaa catgtatgat
751 aatgagccta gtactgccac tgtaaaaaat gataatagag atcgatatca
801 ggttcttcgt agatttcaag ctactgtaac gggaggtcag tatgcaagca
851 aggagcaagc aatagttaag aagttcatga agattaacaa ccatgtcact
901 tacaatcatc aggaggctgc gaagtacgat aaccacacag aaaatgcctt
951 attgttgtat atggcatgta ctcatgctag taatccagtg tatgctacgt
1001 tgaagatcag aatctatttc tatgattctg ttcaaaatta ataaatattg
1051 aattttatta tatgagaaat ttgtacatcg attgtttttt caagtacatc
1101 gtatagtaca tagtcgaatg ctctaattac attgtttatg ctaataactc
1151 ctaaactatc taaatacttc atacaatgat atttaaatac tcttaagaaa
1201 cgccaagtct gaggacgtaa acgagtccag attttgcaga tcagaaaaca
1251 ttgatgtatt cccaacgctt tcctcaggtt gtggttgaac tgtatttgta
1301 ccgttatgat atcgtggttc cccaggaacg gcctctcgtc gtgttgggat
1351 atcttgaaat ataggggatt tgttatcgtc caggtatata cgccattctc
1401 tgcctgagct gcagtgatga gtccccctgt gcgagaatcc atatgacgcg
1451 caattaagtc ctaaatagta agagcagccg cacggaagat caattctccg
1501 cctgcgtatt ggtctctgct tggctatttt gtgttggact ttgatgggta
1551 cctgagtaca atggttttgt gatggtgatg aattctgcat tctttagtgc
1601 ccagtttttg agttcactat ttttgacctc atctaagtac tctttatacg
1651 atgacgtagg accaggattg cagaggaaga tagtgggtat tccaccttta
1701 atttgaatag gtttcccgta cttcgtgttg ctttgccagt ctctttgggc
1751 ccccatgaac tctttaaaat gctttagata atgcggatca acgtcatcaa
1801 tgacgttata ccaagcatca ttgctgtaaa cctttgggct taggtccaga
1851 tgtccgcaca ggtaattgtg ttggcccaga gatctagccc acatcgtctt
1901 tcctgttcta ctattgccct caattacaat acttatgggc ctccaaggcc
1951 gcgcagcggc atccctgaca ttctcggaaa cccattcttc aatttctctt
2001 ggaacttgat cgaaagaaga aggaagaaaa ggacaaacaa aaacctctaa
2051 aggaggtgca aaaatcctat ctaaattcgc atttaaattg tgaaattgta
2101 aaatataatc tttaggggct aattctctaa ttacattaag agcctccgac
2151 ttacttcctg tgttaattgc tttggcgtaa gcatcattgg ctgtttgttg
2201 accccctcta gcagatcttc cgtcgacctg aaacttaccc cattcgacgg
2251 tgtctccgtc tttattaata taggatttga catcggaact tgatttagct
2301 ccctgaatgt ttggatggaa atgtgctgat ctggttgggg ataccaaatc
2351 gaagaatctt tgattcttgc attggaactt cccttcgaac tggatgagca
2401 catggagatg agggctccca tctgcgtgca gttctctgca gattttgatg
2451 tattttttat ttgttggtgt ttctaggttt tgtaattgag aaagtgctac
2501 gtctttagta agagagcatt gtggataagt gaggaaataa tttttggcat
2551 ttattcgaaa ttgtctggga ggtgccattt gaattagtca atggacgcca
2601 attgagagga tttcatcttt ctatagtaat cggtgtctgg ggtcttattt
2651 atacatagac actaaatggc attattgtaa tttttccaag atttcacacg
2701 cgtcccacgt atagttaata tt