Sequence of DPV Citrus yellow mosaic virus
Citrus yellow mosaic virus isolate PM, complete genome.
ACC No: EU489745
Dated: 2009-06-30 | Length: 7487 | CRC: -1884751978
ID EU489745; SV 1; circular; genomic DNA; STD; VRL; 7487 BP.
XX
AC EU489745;
XX
DT 20-APR-2008 (Rel. 95, Created)
DT 30-JUN-2009 (Rel. 101, Last updated, Version 2)
XX
DE Citrus yellow mosaic virus isolate PM, complete genome.
XX
KW .
XX
OS Citrus yellow mosaic virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
XX
RN [1]
RP 1-7487
RX PUBMED; 19444599.
RA Borah B.K., Johnson A.M., Sai Gopal D.V., Dasgupta I.;
RT "Sequencing and computational analysis of complete genome sequences of
RT Citrus yellow mosaic badna virus from acid lime and pummelo";
RL Virus Genes 39(1):137-140(2009).
XX
RN [2]
RP 1-7487
RA Borah B.K., Johnson A.M.A., Saigopal D.V.R., Dasgupta I.;
RT ;
RL Submitted (04-FEB-2008) to the EMBL/GenBank/DDBJ databases.
RL Plant Molecular Biology, Delhi University South Campus, Benito Juarez Road,
RL New Delhi, Delhi 110021, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .7487
FT /organism="Citrus yellow mosaic virus"
FT /host="pummelo"
FT /isolate="PM"
FT /mol_type="genomic DNA"
FT /country="India"
FT /db_xref="taxon:174178"
FT CDS 231. .662
FT /codon_start=1
FT /product="unknown"
FT /note="ORF I"
FT /db_xref="InterPro:IPR010746"
FT /db_xref="UniProtKB/TrEMBL:B2L8N0"
FT /protein_id="ACB87154.1"
FT /translation="MSRIWEEAIQRWYETSHTANLEYLDLASKPKVSNSEISHNLAVVY
FT DRLSLFSRVSIKNFKSIQETLEKQDLRIQKLESSLKTLTSEFIAHKPLSKAEVKNLVTE
FT IAKQPKLVEAQALQLTENLNQKLDRVEALISKVERWVHS"
FT CDS 659. .1072
FT /codon_start=1
FT /product="unknown"
FT /note="ORF II"
FT /db_xref="UniProtKB/TrEMBL:B2L8N1"
FT /protein_id="ACB87155.1"
FT /translation="MTYQATEKTPTYKRALAATEPINSPSLGFVNPEEYSGGITGTKAL
FT IKQNNLLIQLVVELSVNVNNLSEQVDQLAKQLGKQPQQGSSTTALPDDLVDKLRSLSLG
FT TEKKKEKRGTFYAYKDPYLIYKEEVEKLKKQQQ"
FT CDS 1069. .7008
FT /codon_start=1
FT /product="polyprotein"
FT /note="ORF III"
FT /db_xref="GOA:B2L8N2"
FT /db_xref="InterPro:IPR018061"
FT /db_xref="UniProtKB/TrEMBL:B2L8N2"
FT /protein_id="ACB87156.1"
FT /translation="MSSSRARTVVEQLPPATTSRVEERDNTPLYDDQIRDYRQWQRRRH
FT NMGRRWNQLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRSDDRHHQVYIH
FT RSEEAILCVDGDQVDRLLIQPESAEQLNRSGMSFINMGIVQVRIQILHRQHEGTTALVV
FT FRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNG
FT EANLLVTRGIVGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSAADVQGQQWFLR
FT PSNIPAVPMAPTNVDTRNMIDGSISLRFNSYQPAPDPAPVAYNQHDEEIPPDEDEEQIR
FT NHTIALWRENDEVWDTLGEPSGKFDFYVRYTRPAHALQDPAHIIATGWDDLDDNPTPSS
FT PSNNIRTYQTPSPPSSSDENDDMSYLHYLAQQSPVPPPPQDFTNPFSEGGGESTYPYPS
FT FQPPFDLQSDDSYGTLATWSEYDAMSQTNSSPALSLSAKTVFDFDRYSHTTNEDDVVQS
FT AWISENLFRENTGNGEVHNLVPPGPDTPRGDEVKGTQESMAHTVAVTTEGPKQEAEFDY
FT PAFAKLQDHEKCSRPKPKTEKVLSSAISSYTPPSDTAMTPVAYPPAQNIASPSYNPSPQ
FT IPMFEGYSPKRPHFKRDNHTFISLPSAQQNTGALFIMPQQIGLFHEVFTSWEAITKAYV
FT AQQGITDPRDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILSQMR
FT RVFSLEDPATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSE
FT KLWLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFC
FT SSIPIPGYYGGRSSERRYGIRRTTTYKGKPHNTHARIEKTKHLRNKKCKCYLCGEEGHF
FT ARECPNDRRNVKRVAMFEGLDLPDDCEIVSIDEGDPDSDAIFSISEGEETGAFEEQCFV
FT FQEECNGTYWLGKRGGYQDLVQIPISKEIYYCQHEWEENQPIDDPAHVRCYPCKRETTQ
FT RARLHCKLCHITSCLMCGPTYFNKKITVQPIPQAPFNQKGLLQQQQEYIAWCNNEIARL
FT KEEVAFYKQLAQERELQLQLEQSRKELAGADSRRRKDKGVVIDEGSCYFNPEETTRIVA
FT HGDTQVTKTRPVKNMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEEN
FT SFVVNFSGINSKQQVKQKIKPGKMFISEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSM
FT YGGVRLEGNTITFYKQITSINTRLAAPHLQQEEEGKEEELNLEEHRLIQEMVAYSTERP
FT FVHFQQKFAGLIQELKAQGYIGEEPMKYWAKNQVVCHLDIKNPDMVIEDRPLKHVTPQM
FT EESFRKHVEALLKIGAIRPSKSRHRTTAIIVNSGTSINPLTGKEVKGKERMVFIYKRLN
FT DLTNKDQYSLPGIQTILQRLKGSTIFSKFDLKSGFHQVAMHPDSIEWTAFWVPSGLYEW
FT LVMPFGLKNAPAVFQRKMDHCFKGTEAFIAVYIDDILVFSKTEREHEEHLQIMLSICQK
FT NGLILSPTKMKIAQAEIEFPGAIIHKGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGL
FT GLLNYARNYIPHMGRLLSPLYAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPAD
FT CFIIIETDGCMDGWGGVCKWKLAQYDSRSSEKVCAYASGKFNPPKSTIDVEIHAVMNSL
FT NNFKIYYLDKSSLCLRTDCQAIISFFNKSNVNKPSRVRWIAFTDFLTGLGIPVNIEHID
FT GKNNHLADALSRLVTGFVFAEPQCQDKFQDDLGKLEAALLEKKEAPQAMHEEYVSLLTR
FT SADRITLSLYSMRDSSPSRIYSCRSGKEPMKALICEQKSCLSKGDLGSMKTVHSRSASN
FT QQGNWWPSTSINSITSEAKRQETTHMPINCPHAIGTTNSCVKWSSC"
FT CDS 1973. .2518
FT /codon_start=1
FT /transl_except=(pos:1973. .1975,aa:Met)
FT /product="unknown"
FT /note="ORF IV"
FT /db_xref="UniProtKB/TrEMBL:B2L8N3"
FT /protein_id="ACB87157.1"
FT /translation="MDPFLSDSIVINQLRIQHLLPIINMMRKYPLMKMKNRSVIIPLRY
FT GVKMMRYGIHWVNLRVNLTFMFAIPDLHMLYKTLPILLLLVGMILMIILLHPVHPTIFV
FT LTKPLPLLPLLTRMMICPTFTTLLSNHLSLLLHRILPILFRKVVGSLPTLTPHFSHHLT
FT YNQMIHMVLWQLGVSMMP"
FT CDS 3953. .4246
FT /codon_start=1
FT /product="unknown"
FT /note="ORF V"
FT /db_xref="UniProtKB/TrEMBL:B2L8N4"
FT /protein_id="ACB87158.1"
FT /translation="MKEIQTVMLSSASQREKKLEHLKNSVLCSRKNVMGHTGLVREVDT
FT RISCKFQFPKKSTIVSTNGRRINPLMIQRMFDVTLAKEKLLKELAYIVSYAT"
FT CDS 6582. .7046
FT /codon_start=1
FT /product="unknown"
FT /note="ORF VI"
FT /db_xref="UniProtKB/TrEMBL:B2L8N5"
FT /protein_id="ACB87159.1"
FT /translation="MSRQVPGRFREVGSSSSGEERSSASNARRICLPVDQISGPHYPLA
FT LLYEGLVSQQNLLMQVRQRTNEGLNLRTEVMPIQRRLGEYEDCALQECIQSARQLVALH
FT QHKLNYIRGKATRDNAYADKLPTCNRDHEQLCEVVELLEGISERISDTAV"
XX
SQ Sequence 7487 BP; 2334 A; 1616 C; 1648 G; 1889 T; 0 other;
eu489745 Length: 7487 30-JUN-2009 Type: N Check: 5738 ..
1 tggtatcaga gcttggttgt gttcttacaa cgatgggagc ttaaaacctt
51 ccattaggtc tgaggaaaga gttaactgta tggtgtgttt agttcctatt
101 tgtattgtta ttcctttgtt catgatatag aaaacgatca tcgagaaaag
151 ggtgaaggca ctatatctgg cagcaagagg agagtaagtc cagtgaaacc
201 cttcgcatga cgctaaaggt gatctaatct atgtctagaa tctgggaaga
251 agcaatacaa agatggtatg agacatccca tacagccaat ctcgagtact
301 tagatctagc ttcaaaacca aaagtttcca attccgaaat ctcacacaac
351 cttgcagtag tttacgatcg tttgagtctt tttagccgtg tttccattaa
401 gaatttcaaa agtatccaag aaaccctaga aaagcaagac cttagaatcc
451 aaaaacttga gtccagtctg aaaaccctaa ctagtgagtt tatagcccat
501 aaacctttat ccaaagctga ggtgaaaaac ttagttacag aaattgccaa
551 acagccaaag cttgttgaag cacaagccct ccagcttaca gaaaacctga
601 accaaaagct cgatcgggta gaagccttga tatctaaggt ggaacgttgg
651 gttcattcat gacctatcag gctactgaga aaaccccaac atacaagcgt
701 gctcttgcgg caaccgagcc tattaacagt ccatcacttg gatttgttaa
751 cccagaggaa tattctggtg gtataactgg tactaaagct ctcattaagc
801 aaaacaattt gcttattcag ctcgtagtag agctttctgt caacgtcaac
851 aatttgtcag aacaagttga tcagctagca aaacaacttg ggaaacaacc
901 tcagcaaggc tcatcaacaa cagccttacc tgacgatctt gttgacaaac
951 tcagaagcct ttctttaggt actgagaaga agaaggaaaa gcgtggtacc
1001 ttctacgctt acaaagaccc ctacttgatc tacaaggaag aagtagaaaa
1051 gctaaagaag cagcagcaat gagcagtagc cgagcaagaa ccgtggtaga
1101 acaacttcca cctgcaacta cgtcccgagt ggaggaacga gataacaccc
1151 ccctctatga tgatcaaata cgggattaca ggcagtggca gcggcggcgt
1201 cacaacatgg gaagaagatg gaatcaattg ataggtcgac cctacaatca
1251 gaccttggag caggtagtag atcctgaggt agctttacag ttatctatgc
1301 aggaacgtgc aaggctagta ccagcagagg tactttacag atcaaggagt
1351 gatgatcggc accatcaggt ctatatacac agatcagagg aggctatcct
1401 ttgtgttgac ggagatcaag ttgaccggtt actgatacaa ccggaaagtg
1451 ctgaacagct aaacaggagt ggtatgtcct ttatcaatat gggcatagtt
1501 caggttcgga tccagatcct gcacagacag catgagggaa caacagccct
1551 tgtggtgttc agagataatc ggtggcaagg cgatcaatct atattcgcca
1601 ccatggaact tgatttgacc aaaggaatgc aaatggtata cataatccca
1651 gatacaatga tgacagtcag agacttctgc cggaatgttc aaatttccat
1701 attaacaaaa ggatatggga attggcagaa cggtgaggca aatttgcttg
1751 tcacaagggg aatcgttgga cggttatcta atacccctaa tgtggccttt
1801 gcctatcaga tccaaaatgt tacagattat ctagtcagtc atgggattca
1851 ggcgttgcca ggacggcgct attcagctgc agatgtacag ggccagcaat
1901 ggtttctacg accatccaat attccagcag ttccaatggc ccctactaac
1951 gtggatacac gtaacatgat agacggatcc atttctctca gattcaatag
2001 ttatcaacca gctccggatc cagcacctgt tgcctataat caacatgatg
2051 aggaaatacc ccctgatgaa gatgaagaac agatccgtaa tcataccatt
2101 gcgctatggc gtgaaaatga tgaggtatgg gatacactgg gtgaaccttc
2151 gggtaaattt gacttttatg ttcgctatac ccgacctgca catgctttac
2201 aagaccctgc ccatattatt gctactggtt gggatgatct tgatgataat
2251 cctactccat ccagtccatc caacaatatt cgtacttacc aaaccccttc
2301 ccctccttcc tcttctgacg agaatgatga tatgtcctac cttcactacc
2351 ttgctcagca atcacctgtc cctcctcctc cacaggattt taccaatcct
2401 ttttcggaag gtggtgggga gtctacctac ccttacccct catttcagcc
2451 accatttgac ctacaatcag atgattcata tggtactttg gcaacttgga
2501 gtgagtatga tgccatgagc caaactaata gctcacctgc acttagccta
2551 agtgcaaaaa ctgtttttga ttttgacagg tactcccaca caacaaatga
2601 agatgacgtg gttcaatcag cctggatttc tgaaaatcta tttcgtgaaa
2651 acaccggaaa cggtgaagtt cacaatcttg ttccgcctgg accggacacc
2701 cctcggggtg atgaggtcaa aggaacccaa gaatccatgg cccatactgt
2751 tgcagtaacc acagaaggac caaagcagga agctgagttt gactatccgg
2801 cctttgccaa attacaagac catgaaaagt gcagcaggcc taagcccaaa
2851 actgagaaag tcctgtcttc agcgatttct tcatatactc caccaagtga
2901 tactgcaatg acacctgttg cgtacccccc agcgcagaat atagctagcc
2951 caagctacaa cccaagccca caaataccta tgtttgaagg ttacagccca
3001 aaaagacccc acttcaaaag ggataatcat acttttataa gccttccctc
3051 agcccaacaa aatactgggg ctttatttat catgcctcaa cagataggcc
3101 tgtttcatga ggtcttcacc tcttgggaag caattacaaa agcctatgtt
3151 gctcaacagg gtatcacaga ccctagagat aaggctgact tcattgagaa
3201 catgttgggt ccaacagaga aaataatttg gactcaatgg cgtatgggct
3251 acgctgatga atatgagaac cttgtaacaa cagctgacgg acgtgagggt
3301 actcaaaata tactctccca gatgcgaagg gtcttttcat tggaagatcc
3351 agcaactggt tcaactgcag tccaagatga agcttacaga gacttggaga
3401 gactcacttg tgattcagtc aagcatatag tccaatactt gaatgacttt
3451 atgcgaattg cagcaaaaac tgggcgcatg ttcataggcc cagaattgag
3501 tgaaaaacta tggctcaaaa tgccaggtga tctaggccaa aggatgaaga
3551 aggcctatga ggaaaaacat ccaggaaaca tcgttggtgt gtgccctcgg
3601 atcttgttcg cttacaagta ccttgaaggc gagtgtaaag atgcagcgtt
3651 cagacgctcc ctgaagaact tatcattttg cagctcaatc cctatcccag
3701 gctattatgg tggtagaagt agtgagaggc gttatggtat aagacgcaca
3751 accacttaca aagggaaacc tcataacaca catgcaagaa ttgaaaagac
3801 aaaacatttg cgcaataaaa agtgcaagtg ttatctttgt ggagaagaag
3851 gtcacttcgc acgggaatgt ccaaatgacc ggcgaaatgt gaagcgagtt
3901 gcaatgtttg aaggactaga tctccctgat gactgtgaaa tcgtctctat
3951 tgatgaagga gatccagaca gtgatgctat cttcagcatc tcagagggag
4001 aagaaactgg agcatttgaa gaacagtgtt ttgtgttcca ggaagaatgt
4051 aatgggacat actggcttgg taagagaggt ggataccagg atctcgtgca
4101 aattccaatt tccaaagaaa tctactattg tcagcacgaa tgggaggaga
4151 atcaacccat tgatgatcca gcgcatgttc gatgttaccc ttgcaaaaga
4201 gaaactactc aaagagctcg cttacattgt aagctatgcc acataacatc
4251 ctgtcttatg tgtggcccca cctatttcaa caaaaagatc actgtccagc
4301 caatacctca agcacccttc aaccaaaagg gattgttaca acagcaacag
4351 gaatacatcg cctggtgcaa taatgaaatt gccagattaa aggaagaagt
4401 tgctttttac aagcagcttg cccaggagag agagttgcaa ttacagttag
4451 aacagtctag aaaggagtta gcaggagcag actctcgcag gcgaaaagac
4501 aaaggggtag taattgatga agggtcatgc tacttcaatc cagaggaaac
4551 aaccagaata gttgctcatg gagatacaca ggttaccaaa actagacctg
4601 tgaaaaatat gttatataac atggatgtgc gaatggagat tccaggcatc
4651 ccagctttta cagtaaaggc gattcttgac acaggagcaa caacctgctg
4701 cattgacagc agaagtgtgc caaaagatgc ccttgaagag aattcgtttg
4751 tggtaaattt ctcaggcatc aactcaaaac agcaagttaa gcagaagatt
4801 aagccgggaa aaatgttcat cagtgagcat tacttccgaa ttccatattg
4851 ctacagcttc gagatgcaaa ttggtgatgg catccaactc attcttgggt
4901 gcaactttat acggagcatg tatggtggtg tacgactaga aggtaatacc
4951 ataaccttct acaagcagat cacaagtatc aacaccagac ttgctgcacc
5001 tcacctccag caggaagaag aagggaaaga agaggagctt aacctggaag
5051 aacacaggtt aattcaggaa atggttgcat actctactga gcggccattt
5101 gttcatttcc aacaaaaatt tgcagggctt attcaggagt tgaaagccca
5151 gggttacatt ggggaagagc ctatgaaata ttgggccaaa aatcaagttg
5201 tttgccatct ggacatcaaa aatccagata tggtaattga agatcgccca
5251 ctgaagcatg tgacacctca aatggaagaa agctttcgca agcatgtgga
5301 agcactgtta aaaattggtg cgatccgacc cagtaaaagt cgacacagga
5351 caacagccat tatagtcaac tctggaacca gtattaatcc tctcacaggc
5401 aaagaagtca aaggcaaaga gaggatggtc tttatctata aaaggttaaa
5451 tgacctcaca aacaaagatc aatacagcct tccgggcatc caaacgatcc
5501 tgcaaaggtt aaaggggagt actatattct ccaaatttga ccttaaaagt
5551 ggctttcacc aggtagcaat gcatccagat tcaattgaat ggacagcttt
5601 ttgggtgcct agcggtctct atgaatggtt agtcatgcca ttcgggttaa
5651 agaatgctcc agcagttttt cagagaaaaa tggatcactg cttcaaaggg
5701 acagaggcct ttatcgctgt ttatattgat gacatcctgg tgttctcaaa
5751 gactgaaagg gaacatgaag agcatttaca gattatgctc tcgatctgcc
5801 aaaagaatgg gcttatcttg agcccaacaa agatgaaaat tgcccaagct
5851 gaaattgaat tccccggggc aatcattcac aaagggctta ttaaattaca
5901 gccccatatt gtccaaaagt tgctaacttt caccaacaag caactcgagg
5951 aagtgaaagg gctcagatca tggttggggt tgggcctact aaactatgca
6001 aggaattaca ttcctcacat gggccgttta ctcagcccat tgtatgccaa
6051 agtcagccca actggtgaac ggagaatgaa taggcaagat tgggccttga
6101 tcgacaaaat aagagcccaa gtccagaacc ttccagccct ggaattacca
6151 cctgcggact gtttcatcat catcgaaaca gatggatgca tggatggttg
6201 gggaggtgtc tgcaaatgga agttagcaca atatgactct aggagttcag
6251 aaaaggtttg tgcttatgca agtgggaagt tcaacccacc aaagtcaaca
6301 atcgatgtgg agatacatgc agtgatgaac agcctcaaca atttcaaaat
6351 ctattaccta gacaaatcca gcttatgttt aaggactgac tgtcaagcta
6401 ttattagctt ctttaataag tccaatgtta acaaaccatc tagggttaga
6451 tggattgctt tcacagattt ccttactggt ctaggaatcc ctgtaaatat
6501 agagcacata gatgggaaga ataaccatct ggctgatgct ctgtccagat
6551 tagtaactgg ttttgttttt gcagaaccac aatgtcaaga caagttccag
6601 gacgatttag ggaagttgga agcagctctt ctggagaaga aagaagctcc
6651 gcaagcaatg cacgaagaat atgtctccct gttgaccaga tcagcggacc
6701 gcattaccct ctcgctctac tctatgaggg actcgtctcc cagcagaatc
6751 tactcatgca ggtcaggcaa agaaccaatg aaggccttaa tttgcgaaca
6801 gaagtcatgc ctatccaaag gcgacttggg gagtatgaag actgtgcact
6851 ccaggagtgc atccaatcag caaggcaact ggtggccctc caccagcata
6901 aactcaatta catcagaggc aaagcgacaa gagacaacgc atatgccgat
6951 aaactgccca catgcaatag ggaccacgaa cagctgtgtg aagtggtcga
7001 gctgttagag ggaatctcag aaaggatcag tgatacagct gtctaggata
7051 gctggcttca attatggagc atgatggacc ccccgcaata atccaaagtg
7101 tggagtgctt tattgtaata atttatgctt ttgcttttgt aagtgcgctg
7151 tagtgcgcct gtctttatgc tttcttatcc tttaagcatc ttttgctttt
7201 tgcgtggcat cctttagttc acaatttaaa gaatgacgat ggggcccaag
7251 atgtgcaccc ggttctctaa attgcctata taaggatatg ccatagcctt
7301 gtttttgcaa gtcaggaata cctgagcata acttggctaa gcaaaagaat
7351 tgtaagtttt ctttctaagc ttttttgttt gtaagctttt cagttcttaa
7401 taaatctctc gttaatcgtt gtgaacacat cttgtctttt gagtatttgt
7451 ttttgtattt gctatttgct atttgctttt cctcgaa