Sequence of DPV Maize streak virus
Maize streak virus isolate MSV-B3_Re-BasE-R7-2006, complete genome.
ACC No: EU628619
Dated: 2008-09-30 | Length: 2684 | CRC: -1461932858
ID EU628619; SV 1; circular; genomic DNA; STD; VRL; 2684 BP.
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AC EU628619;
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DT 30-SEP-2008 (Rel. 97, Created)
DT 30-SEP-2008 (Rel. 97, Last updated, Version 1)
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DE Maize streak virus isolate MSV-B3_Re-BasE-R7-2006, complete genome.
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KW .
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OS Maize streak virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus.
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RN [1]
RP 1-2684
RX PUBMED; 18753214.
RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B.,
RA Rybicki E.P., Peterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S.,
RA Windram O.P., Lefeuvre P., Lett J.M., Martin D.P.;
RT "Recombination, decreased host specificity and increased mobility may have
RT driven the emergence of maize streak virus as an agricultural pathogen";
RL J. Gen. Virol. 89(PT 9):2063-2074(2008).
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RN [2]
RP 1-2684
RA Varsani A., Shepherd D.N., Monjane A.L., Owor B.E., Erdmann J.B.,
RA Rybicki E.P., Piterschmitt M., Briddon R.W., Markham P.G., Oluwafemi S.,
RA Windram O.P., Lefeurve P., Lett J.-M.;
RT ;
RL Submitted (10-APR-2008) to the EMBL/GenBank/DDBJ databases.
RL Electron Microscope Unit, University of Cape Town, RW James Bld,
RL Rondebosch, Cape Town, WP 7701, South Africa
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FH Key Location/Qualifiers
FH
FT source 1. .2684
FT /organism="Maize streak virus"
FT /specific_host="Cenchrus myosuroides"
FT /isolate="MSV-B3_Re-BasE-R7-2006"
FT /mol_type="genomic DNA"
FT /country="Reunion"
FT /lat_lon="21.31 S 55.5 E"
FT /collection_date="2006"
FT /db_xref="taxon:10821"
FT CDS 158. .463
FT /codon_start=1
FT /product="movement protein"
FT /protein_id="ACF40496.1"
FT /translation="MDPQNSYLLQPRVPTAAPTSGGVPWSRVGEVAILSFVGLICFYLL
FT YLWVLRDLILVLKARQGRSTEELIFGIQAVDRSNPIPNIQAPPSQGNPGPFVPGTG"
FT CDS 474. .1208
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ACF40497.1"
FT /translation="MSTSKRKRGDDANWNKRVTKKKPSSAGLKKAGSKADRPSLQIQTL
FT QHAGSTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAQACKYSNT
FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT GNGLTFTAHGQTRLYFKSVGNQ"
FT CDS complement(1714. .2532)
FT /codon_start=1
FT /product="RepA"
FT /protein_id="ACF40498.1"
FT /translation="MASSSSNRQFSHRNVNTFLTYPHCPENPEIVCQMIWELVGRWTPK
FT YIICAREAHRDESFHLHALVQTDKPVRITDSRFFDINGFHPNIQSAKSVNKVRDYILKE
FT PLALFERGTFIPRKSSFLGNPSKGNSEKKPSKDEIMREIISHSTSKQEYLSLVRKEFPY
FT DWATKLQYFEYSANKLFPEIQEEFISPHPPSSPDLLCNESIKDWLQPNIYQVSPESYML
FT LQPTCYTVEDAISDLEWMDKLSSQQMKDQESRASTSSAQQGQENLLGPEA"
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SQ Sequence 2684 BP; 679 A; 621 C; 678 G; 706 T; 0 other;
eu628619 Length: 2684 30-SEP-2008 Type: N Check: 1427 ..
1 taatattacc gcgccttctt ttcctgcgag ggcccggtag ggcccgagcg
51 atttgattta aagtttggtt ctgctttgtt tgatttattg aaagcagtcc
101 tgtttaaaga aaccggtccc ctgcgactat aaattgtctc acaagtgcga
151 ttcatttatg gatccacaga actcctatct tctacagccg cgggtaccca
201 cagcagctcc gacatccgga ggagtgccgt ggagtcgcgt aggcgaggta
251 gctattttga gctttgttgg attgatttgc ttttacctgc tttacctttg
301 ggtgctgaga gatcttatct tagttctgaa ggctcgacaa ggcagatcca
351 cggaggagct gatatttgga atacaagctg tggataggag caaccctatc
401 cctaatatac aagcaccacc aagtcagggg aatcccgggc cgtttgttcc
451 aggcacggga taagcaatca gccatgtcca cgtccaagag gaagcgggga
501 gatgatgcga actggaataa gcgggtgact aagaagaagc cttcttcagc
551 tggtctgaag aaggctggaa gcaaggccga taggccatcc cttcagatcc
601 agacactcca gcatgctggg tccaccatga taacagtccc ctccggagga
651 gtatgtgacc tcatcaacac ctatgcccga ggatctgacg agggcaaccg
701 ccacaccagc gagactctga cgtacaagat tgccgtcgac taccacttcg
751 ttgctgacgc gcaagcctgc aagtactcca acaccggaac cggtgtgatg
801 tggctggtgt atgacaccac tcccggcgga caagcgccga ccccacaaac
851 tatatttgcc tacccggaca cgctgaaagc ttggccggcg acatggaaag
901 tgagccggga gctgtgtcat cgcttcgtgg tgaaacggcg atggttgttc
951 aacatggaga ccgacggtcg gattggttcg gatatccctc catcgaatgc
1001 aagttggaag ccttgcaagc gcaacatcta cttccacaag ttcacgagtg
1051 ggttgggagt gagaacgcag tggaagaatg taacggacgg aggagttggt
1101 gccatccaga gaggagctct gtacatggtc attgcccctg gcaatggcct
1151 tacatttact gcccatgggc agacccgtct gtactttaag agtgttggca
1201 accagtaatg aataaaaact cccgttttat tatatctgat gaatgctgaa
1251 agcttacatt aatatgtcag ccgattggct gaacgaaaaa tacatagcgc
1301 agccgcgggc taaagaccgc gtctcaagcg accctgaaca tacaataatc
1351 gaaaaaacaa gatgattatg aattaaactt cctccgtagg aggaagcaca
1401 gggggagaaa accacttctc ccccggcgac ataatgtaaa tcatgcagtt
1451 tgcctcgaaa tactccagct gccctggagt catttccttc atccagtctt
1501 catccgagtt ggcgaggatt attgtaggct tggacttcat ctgcactttc
1551 ttcttctttc catattttgg atttacgacg aattcttttt ggcagccaac
1601 taactgtttc caacaaggac agtatttaaa cgggatatca tctacgatgt
1651 tgtagattgc gtcttcgttg taggaagacc aatcaacatt attctgccaa
1701 taattatgaa cccctaggct tctggcccaa gtagattttc ctgtccttgt
1751 tgggccgacg atgtagaggc tctgctttct tgatccttca tctgttggct
1801 ggataattta tccatccatt caaggtcaga gatagcatct tcgacggtat
1851 aacaggttgg ttgaagaagc atgtatgatt ctggactaac ctgatagatg
1901 ttaggctgga gccaatcttt gattgactca ttacaaagga gatcaggtga
1951 agatggtgga tgagggctga tgaactcttc ctgaatctca ggaaacagtt
2001 tatttgcaga gtattcaaaa tactgcaatt ttgtggccca gtcatagggg
2051 aactctttac gaaccaaaga gaggtactct tgctttgaag tggagtgtga
2101 aataatctct cgcattattt catctttgga aggttttttt tctgaattcc
2151 ccttggaagg atttcctagg aagcttgact tcctaggaat gaaagtacct
2201 ctctcaaaca aggccagagg ttccttgaga atgtaatccc tgaccttgtt
2251 tactgatttg gcactctgaa tgttcgggtg gaacccgttg atatcaaaga
2301 accttgagtc agtgattctt accggtttgt ccgtctggac taatgcatgt
2351 aggtgaaaac tctcatctct atgtgcctct cgggcacata tgatgtactt
2401 gggtgtccaa cgaccgacga gctcccaaat catctgacag acgatttctg
2451 gattttctgg acagtgtgga tatgttaaga acgtgttaac gttcctgtgt
2501 gagaactgac ggttggatga ggaggaggcc atatcggacg actccgagca
2551 gcttgcggga tggcaggttg ggagctccaa actctatgta accggtttgc
2601 gccttcgaaa tccgccgctc ccccttttat agtggttgtt attgggccgg
2651 actgggccgg cccgcgggaa aagaaggcgc gcac