Sequence of DPV Grapevine fanleaf virus

Grapevine fanleaf virus isolate D1 polyprotein gene, partial cds.

ACC No: EU702445

Dated: 2009-05-10 | Length: 1756 | CRC: -2089966755

                
ID   EU702445; SV 1; linear; genomic RNA; STD; VRL; 1756 BP.
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AC   EU702445;
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DT   01-JAN-2009 (Rel. 98, Created)
DT   10-MAY-2009 (Rel. 100, Last updated, Version 2)
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DE   Grapevine fanleaf virus isolate D1 polyprotein gene, partial cds.
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KW   .
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OS   Grapevine fanleaf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC   Comoviridae; Nepovirus; Subgroup A.
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RN   [1]
RP   1-1756
RA   Liebenberg A., Freeborough M.-J., Visser C.J., Bellstedt D.U., Burger J.T.;
RT   "Genetic variability within the coat protein gene of Grapevine fanleaf
RT   virus isolates from South Africa and the evaluation of RT-PCR, DAS-ELISA
RT   and ImmunoStrips as virus diagnostic assays";
RL   Virus Res. 142(1-2):28-35(2009).
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RN   [2]
RP   1-1756
RA   Liebenberg A., Freeborough M.-J., Burger J.T.;
RT   ;
RL   Submitted (06-MAY-2008) to the EMBL/GenBank/DDBJ databases.
RL   Genetics, University of Stellenbosch, JC Smuts Building, Van der Bijl
RL   Street, Stellenbosch 7600, South Africa
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1756
FT                   /organism="Grapevine fanleaf virus"
FT                   /segment="RNA2"
FT                   /host="Vitis vinifera cv. Petit Verdot"
FT                   /isolate="D1"
FT                   /mol_type="genomic RNA"
FT                   /country="South Africa"
FT                   /collection_date="Nov-2007"
FT                   /db_xref="taxon:12274"
FT   CDS             <1. .1614
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="UniProtKB/TrEMBL:B8QT92"
FT                   /protein_id="ACH61797.1"
FT                   /translation="TFSIRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVIYIPK
FT                   DCQANRYLGTLNIRDMISDFKGVQYEKWIAAGLVMPTFKIVIRLPANAFTGLTWVMSFD
FT                   AYNRITSRITASADPVYTLSVPHWLIHHKLGTFSCKVDYGELCGHAMWFKSTTFESPRL
FT                   HFICLTGNNKELAADWQAVVELYAELEEATSFLGKPTLVFDPGVFDGKFQFLTCPPIFF
FT                   DLTAVTALRSAGLTLGQVPMVGTTKVYNLNSALVSCVLGMGGTIRGRVHICAPIFYSIV
FT                   LWVVSEWNGTTMDWNELFKYPGVYVEEDGSFEVKIRSPYHRTPARLLAGQSQRDMSSLN
FT                   FYAIAGPIAPSGETARLPIVVQIDEIVRPDLSLPSFEDDYFVWVDFSEFTLDKEEIEIG
FT                   SRFFDFTSNTCRVSMGENPFAAMIACHGLHSGVLDLKLQWSLNTEFGKSSGSVTITKLV
FT                   GDKAMGLDGPSQVFAIQKLEGVTELLIGNFAGANPNTHFSLYSRWMAIKLDQAKSIKVL
FT                   RVLCKPRPGFSFYGRTSFPV"
FT   mat_peptide     <1. .198
FT                   /product="movement protein"
FT                   /note="2B"
FT   mat_peptide     199. .1611
FT                   /product="coat protein"
FT                   /note="2C"
FT   3'UTR           1615. .>1756
XX
SQ   Sequence 1756 BP; 445 A; 328 C; 436 G; 547 T; 0 other;

eu702445 Length: 1756  10-MAY-2009  Type: N  Check: 5901  ..

       1  accttctcta tcaggagtcg ctcacgatcg gtgaggattg acagaaatgt
      51  tgatcttccc caacttgagg ctgaacccag attgagttca actgtgagag
     101  gactagctgg tagaggagtg atttatatcc caaaggattg ccaggcaaat
     151  aggtacttgg gcaccctgaa catacgtgat atgatctcag atttcaaagg
     201  tgtccagtat gaaaagtgga tagctgcagg attagtcatg cctactttca
     251  agatagttat taggctacct gcaaatgctt tcactggatt gacatgggtg
     301  atgagctttg atgcttataa ccggataact agtagaatca ctgctagtgc
     351  ggatcctgtg tacactctat cagtcccaca ttggcttatc caccataagt
     401  tgggcacgtt ttcgtgtaaa gtggactatg gagaattgtg tggtcatgcc
     451  atgtggttta agtccacgac ttttgaatct ccaaggttac actttatatg
     501  tttgacgggt aacaacaaag agcttgcggc agactggcaa gctgttgtgg
     551  agctatacgc tgaattggaa gaggccacct cttttcttgg gaaaccaact
     601  ttggttttcg acccaggagt ttttgatggt aaattccaat ttctgacttg
     651  ccctcccata ttttttgact tgacagccgt cacagccctt aggagtgctg
     701  ggctgacatt gggacaagtc ccaatggttg gcaccaccaa ggtttataac
     751  ttaaacagcg ctctcgtgag ctgtgttttg ggtatgggag gtactattag
     801  aggaagagtg catatctgtg cgccaatctt ctatagtatt gttttgtggg
     851  ttgtcagtga gtggaacggg accactatgg actggaatga acttttcaag
     901  tatcccgggg tgtatgtgga agaggatgga agctttgaag tcaaaattcg
     951  ttctccatat caccgtacgc ctgctagatt gcttgctggt caaagtcaga
    1001  gggacatgag ctctctaaat ttttatgcaa tagcagggcc tatcgctcca
    1051  tcgggtgaaa ctgcacgatt gcccattgtt gtgcaaattg atgaaatcgt
    1101  gcgccctgat ctttctctac caagttttga agatgattat tttgtatggg
    1151  tggatttttc tgagttcact cttgataaag aagaaattga gattggttct
    1201  cgtttctttg attttacttc aaacacttgt agagtgtcta tgggagaaaa
    1251  cccgtttgct gcaatgattg cctgtcatgg attgcatagt ggtgtattgg
    1301  atctcaaact gcaatggagt ctgaacactg aatttggcaa gagcagcggg
    1351  agcgttacta tcacgaagct ggttggcgat aaagccatgg gtctggatgg
    1401  gccttcacaa gtttttgcca tacaaaaact agagggagtc acggaactgt
    1451  tgattgggaa ttttgcagga gcaaacccaa atactcattt ctctctctat
    1501  agtagatgga tggcaattaa attggatcaa gcaaagagca ttaaagtgct
    1551  ccgtgttttg tgtaaacccc gcccaggttt cagtttttat ggaagaacca
    1601  gcttcccagt ctagggtatc tgactttaaa agacccaggt gtacatgtgt
    1651  actgtattag taatgtacgt tatttggtgt tgtaatctgc tttaacttgt
    1701  ttactgcttt agtgtgttta ttttcatgct tttagtggcg acagtgtgtt
    1751  gtttgt