Sequence of DPV Sweet potato feathery mottle virus
Sweet potato feathery mottle virus isolate OR1-1 polyprotein gene, partial cds.
ACC No: EU809482
Dated: 2012-09-03 | Length: 1716 | CRC: 1025970399
ID EU809482; SV 1; linear; genomic RNA; STD; VRL; 1716 BP.
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AC EU809482;
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DT 30-DEC-2009 (Rel. 103, Created)
DT 03-SEP-2012 (Rel. 114, Last updated, Version 2)
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DE Sweet potato feathery mottle virus isolate OR1-1 polyprotein gene, partial
DE cds.
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KW .
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OS Sweet potato feathery mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1716
RX DOI; 10.1094/PDIS-93-9-0933.
RX AGRICOLA; IND44294830.
RA Rannali M., Czekaj V., Jones R.A.C., Fletcher J.D., Davis R.I., Mu L.,
RA Valkonen J.P.T.;
RT "Molecular Characterization of Sweet potato feathery mottle virus (SPFMV)
RT Isolates from Easter Island, French Polynesia, New Zealand, and Southern
RT Africa";
RL Plant Dis. 93(9):933-939(2009).
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RN [2]
RP 1-1716
RA Rannali M., Czekaj V., Jones R., Fletcher J., Davis R., Mu L., Valkonen J.;
RT ;
RL Submitted (09-JUN-2008) to the INSDC.
RL Department of Applied Biology, University of Helsinki, PL 27
RL Latokartanonkaari 7, Helsinki 00014, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .1716
FT /organism="Sweet potato feathery mottle virus"
FT /host="Ipomoea batatas (sweet potato)"
FT /strain="RC"
FT /isolate="OR1-1"
FT /mol_type="genomic RNA"
FT /country="French Polynesia:Moorea"
FT /db_xref="taxon:12844"
FT CDS <1. .1552
FT /codon_start=2
FT /product="polyprotein"
FT /db_xref="GOA:D2CTJ6"
FT /db_xref="InterPro:IPR001205"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="UniProtKB/TrEMBL:D2CTJ6"
FT /protein_id="ACJ01826.1"
FT /translation="LMVVLAVHYTLLKLGIQESEFDECCVFFANGDDLLLAMRPDTAHL
FT LDKFSECFSELGLNYDFSSRTRNKEELWFMSHCGVKRDGVFIPKLEPERIVSILEWDRS
FT HEPIHRLEAICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARSGKAPYIAETALKA
FT LYTGIQPSAFELSTYAKVLNEMYDDSVLQENELEVYHQSNERTEFKDAGADPPAPKPKN
FT IPPPPTITEVTDPEDPKQAALKAARAKQPATIPESYGRDTSKEKESIVGASSKGVRDKD
FT VNVGTVGTFVVPRVRMNANKKRQPMVNGRAIINFQHLSTYEPEQFEVANTRSTQEQFQA
FT WYEGVKGDYGVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDH
FT AVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTP
FT ARAKEAHLQMKAAALKNAKNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ"
FT mat_peptide <1. .604
FT /product="nuclear inclusion protein b"
FT /note="NIb"
FT mat_peptide 605. .1549
FT /product="coat protein"
FT /note="CP"
FT 3'UTR 1553. .1716
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SQ Sequence 1716 BP; 534 A; 318 C; 416 G; 448 T; 0 other;
eu809482 Length: 1716 03-SEP-2012 Type: N Check: 2914 ..
1 acttatggtt gtgttagcag tacactatac actgctgaaa ctaggtattc
51 aggagagtga gtttgatgaa tgctgcgtct tcttcgcgaa tggagatgat
101 ctattactgg caatgagacc agacacagct catttactgg ataagtttag
151 tgagtgcttt tcagagttag gactcaatta tgatttttca tcgcgaacca
201 gaaataaaga agagctatgg tttatgtcac actgtggagt gaaacgtgat
251 ggggtattca taccgaagct ggagcctgag agaatcgtct ccattcttga
301 atgggatcgc tcacacgaac cgattcatcg attggaagca atatgtgctg
351 cgatggtaga atcatggggt tatgatgaac ttcttcatca tatcagaaaa
401 ttctatgcat gggtattgga ccaagcccca tacaatgaat tagcacgaag
451 tgggaaggca ccatacatag ctgaaactgc acttaaagca ctctatactg
501 gcatccaacc tagtgctttt gaattgagta cgtatgcaaa agtgcttaac
551 gaaatgtatg atgatagtgt acttcaggag aatgagttag aagtatacca
601 tcaatctaat gaacgtactg aattcaaaga tgcaggagcg gaccctccag
651 cccctaagcc taagaatatc cctccaccac ccacaataac tgaggttact
701 gatccagaag acccaaagca ggcagctttg aaagctgcac gagctaagca
751 acccgcaacc attccagaat catatggacg agacactagc aaagagaagg
801 agtcaatagt gggggcatca tcaaagggtg tgagggataa agatgtaaac
851 gttggtacag ttggtacgtt tgttgtgcca cgtgttagga tgaatgcaaa
901 caagaaaagg caaccgatgg taaatggaag ggccattata aatttccaac
951 acttgtcaac atatgagcca gaacagtttg aggttgcaaa cacccggtcg
1001 actcaagaac agtttcaagc atggtatgag ggagtgaaag gggactatgg
1051 tgttgacgat acaggaatgg ggatcttatt gaatggatta atggtttggt
1101 gcattgaaaa tggcacatcc ccaaatataa atggtgtgtg gacaatgatg
1151 gatggtgatg agcaagtgac atatccaatt aaaccattgt tggaccatgc
1201 agtgcctact tttaggcaga ttatgacgca cttcagtgac gttgctgaag
1251 cttacataga gatgcgaaac cgtacaaagg cgtacatgcc aaggtatggt
1301 ctacaacgta atttgactga tatgagtctt gcgcgatatg catttgattt
1351 ctacgagctg cattcaacca cccctgcacg tgcaaaagaa gcacatttac
1401 agatgaaggc agccgcactt aagaatgcga aaaatcggtt gtttggtttg
1451 gacggaaacg tctccacgca agaagaagat acggagaggc acacgacaac
1501 tgatgttact agaaatatac ataacctctt aggaatgagg ggtgtgcaat
1551 aggacatcct ctgcactgta gtttatactt atgttatctt tagtatgcct
1601 ttaatttaaa ttcgtgtctt tcagtcccga aggagatggt tgagtgcata
1651 acatggtgag attatatctc ggttattgca tttgagaagt cgcctttcta
1701 ttacgtatca taaggg